From c2b1f6b23b9321ec6a56a6bda5c06b62c2b55721 Mon Sep 17 00:00:00 2001 From: Kevin Rue-Albrecht Date: Thu, 28 Sep 2023 11:52:32 +0100 Subject: [PATCH] Built site for gh-pages --- .nojekyll | 2 +- first.html | 481 ++++++++++++++++++++++++++++++++++++++++++++++++ index.html | 8 +- intro.html | 6 + references.html | 12 +- search.json | 7 + ui.html | 12 +- 7 files changed, 520 insertions(+), 8 deletions(-) create mode 100644 first.html diff --git a/.nojekyll b/.nojekyll index c9d67cd..f4fc2da 100644 --- a/.nojekyll +++ b/.nojekyll @@ -1 +1 @@ -7cbf336c \ No newline at end of file +ee0595b3 \ No newline at end of file diff --git a/first.html b/first.html new file mode 100644 index 0000000..5c023b0 --- /dev/null +++ b/first.html @@ -0,0 +1,481 @@ + + + + + + + + + +iSEETheBook - 3  First use + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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3  First use

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3.1 Quick start

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The iSEE package is built around the iSEE() function.

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In the simplest case, given nothing more than a SummarizedExperiment object, the iSEE() function automatically scans the object for information stored in standard components and returns a shiny app object. If the shiny app object is not assigned to an object name, the app is immediately launched in a new window.

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The code chunk below illustrate conceptually how:

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library(SummarizedExperiment)
+library(iSEE)
+se <- SummarizedExperiment(...)
+iSEE(se)
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In the code chunk above, SummarizedExperiment(...) is pseudo-code that represents the creation of SummarizedExperiment; do not run that code! In practice, you will produce those objects through your own scripts and workflows.

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    iSEETheBook

    Preface

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    This book compiles essential knowledge about iSEE, an R package released through the Bioconductor project.

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    This book compiles essential knowledge about iSEE, an R package released through the Bioconductor project.

    This book caters for three main groups of users:

    • End users interacting with the graphical user interface in their web browser.
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    References

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    <

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