diff --git a/Biospecimen/index.html b/Biospecimen/index.html index 65ad68e..083d144 100644 --- a/Biospecimen/index.html +++ b/Biospecimen/index.html @@ -243,7 +243,7 @@

Class: Biospecimen (Biospecimen)

Biospecimen : containerAvailability - Biospecimen --|> enum_containerAvailability : containerAvailability + Biospecimen --> enum_containerAvailability : containerAvailability Biospecimen : containerExternalId @@ -251,11 +251,11 @@

Class: Biospecimen (Biospecimen)

Biospecimen : hasParticipant - Biospecimen --|> Participant : hasParticipant + Biospecimen --> Participant : hasParticipant Biospecimen : hasStudy - Biospecimen --|> Study : hasStudy + Biospecimen --> Study : hasStudy Biospecimen : laboratoryProcedure @@ -267,7 +267,7 @@

Class: Biospecimen (Biospecimen)

Biospecimen : sampleAvailability - Biospecimen --|> enum_sampleAvailability : sampleAvailability + Biospecimen --> enum_sampleAvailability : sampleAvailability Biospecimen : sampleExternalId @@ -560,10 +560,11 @@

Induced

alias: hasStudy owner: Biospecimen domain_of: - - Participant - - Condition - Biospecimen - DataFile + - Dataset + - Participant + - Condition range: Study hasParticipant: name: hasParticipant @@ -575,9 +576,9 @@

Induced

alias: hasParticipant owner: Biospecimen domain_of: - - Condition - Biospecimen - DataFile + - Condition range: Participant sampleGlobalId: name: sampleGlobalId diff --git a/Condition/index.html b/Condition/index.html index a0f71b0..f7d3291 100644 --- a/Condition/index.html +++ b/Condition/index.html @@ -226,35 +226,35 @@

Class: Condition (Condition)

Condition : conditionDataSource - Condition --|> enum_conditionDataSource : conditionDataSource + Condition --> enum_conditionDataSource : conditionDataSource Condition : conditionInterpretation - Condition --|> enum_conditionInterpretation : conditionInterpretation + Condition --> enum_conditionInterpretation : conditionInterpretation Condition : conditionMeasureSourceText - Condition --|> None : conditionMeasureSourceText + Condition --> None : conditionMeasureSourceText Condition : conditionStatus - Condition --|> enum_conditionStatus : conditionStatus + Condition --> enum_conditionStatus : conditionStatus Condition : eventId - Condition --|> None : eventId + Condition --> None : eventId Condition : eventType - Condition --|> None : eventType + Condition --> None : eventType Condition : hasParticipant - Condition --|> Participant : hasParticipant + Condition --> Participant : hasParticipant Condition : hasStudy - Condition --|> Study : hasStudy + Condition --> Study : hasStudy Condition : hpoCode @@ -511,10 +511,11 @@

Induced

alias: hasStudy owner: Condition domain_of: - - Participant - - Condition - Biospecimen - DataFile + - Dataset + - Participant + - Condition range: Study hasParticipant: name: hasParticipant @@ -526,9 +527,9 @@

Induced

alias: hasParticipant owner: Condition domain_of: - - Condition - Biospecimen - DataFile + - Condition range: Participant eventId: name: eventId diff --git a/DataFile/index.html b/DataFile/index.html index 808bf51..6ba1993 100644 --- a/DataFile/index.html +++ b/DataFile/index.html @@ -226,10 +226,12 @@

Class: Data File (DataFile)

DataFile : dataAccess - DataFile --|> enum_dataAccess : dataAccess + DataFile --> enum_dataAccess : dataAccess DataFile : dataCategory + DataFile --> enum_DataCategory : dataCategory + DataFile : dataType DataFile : experimentalPlatform @@ -252,15 +254,15 @@

Class: Data File (DataFile)

DataFile : hasBiospecimen - DataFile --|> Biospecimen : hasBiospecimen + DataFile --> Biospecimen : hasBiospecimen DataFile : hasParticipant - DataFile --|> Participant : hasParticipant + DataFile --> Participant : hasParticipant DataFile : hasStudy - DataFile --|> Study : hasStudy + DataFile --> Study : hasStudy DataFile : publicationDoi @@ -334,7 +336,7 @@

Slots

dataCategory -1..1
String +1..1
EnumDataCategory General category of data in file (e direct @@ -491,10 +493,11 @@

Induced

alias: hasStudy owner: DataFile domain_of: - - Participant - - Condition - Biospecimen - DataFile + - Dataset + - Participant + - Condition range: Study hasParticipant: name: hasParticipant @@ -506,9 +509,9 @@

Induced

alias: hasParticipant owner: DataFile domain_of: - - Condition - Biospecimen - DataFile + - Condition range: Participant hasBiospecimen: name: hasBiospecimen @@ -597,7 +600,7 @@

Induced

owner: DataFile domain_of: - DataFile - range: string + range: enum_DataCategory required: true dataType: name: dataType diff --git a/Dataset/index.html b/Dataset/index.html new file mode 100644 index 0000000..0817dd1 --- /dev/null +++ b/Dataset/index.html @@ -0,0 +1,757 @@ + + + + + + + + + + +Class: Dataset (Dataset) - INCLUDE V2 Data Model + + + + + + + + + + + + +
+ + Skip to content + +
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Class: Dataset (Dataset)

+

Information about a specific grouping of data files

+

URI: include:Dataset

+
classDiagram + class Dataset + Thing <|-- Dataset + + Dataset : accessLimitations + + Dataset : accessRequirements + + Dataset : dataCollectionEndYear + + Dataset --> None : dataCollectionEndYear + + Dataset : dataCollectionStartYear + + Dataset --> None : dataCollectionStartYear + + Dataset : datasetDataCategory + + Dataset --> enum_DataCategory : datasetDataCategory + + Dataset : datasetDataType + + Dataset : datasetDbgap + + Dataset : datasetExpectedNumberOfParticipants + + Dataset : datasetExperimentalPlatform + + Dataset : datasetExperimentalStrategy + + Dataset : datasetExternalId + + Dataset : datasetGlobalId + + Dataset : datasetName + + Dataset : datasetPublication + + Dataset : expectedNumberOfFiles + + Dataset : hasStudy + + Dataset --> Study : hasStudy + + Dataset : otherAccessAuthority + + Dataset : otherRepository + + +
+

Inheritance

+ +

Slots

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
NameCardinality and RangeDescriptionInheritance
hasStudy0..1
Study
Link to a Studydirect
datasetName1..1
String
Full name of the dataset, provided by contributordirect
datasetGlobalId0..1
String
Unique Global ID for dataset, generated by DCCdirect
datasetExternalId0..1
String
Unique identifier or code for dataset, if provided by contributordirect
datasetExpectedNumberOfParticipants1..1
Integer
Expected number of participants in this datasetdirect
expectedNumberOfFiles0..1
Integer
Expected number of files associated with this datasetdirect
dataCollectionStartYear0..1
String
Year that data collection starteddirect
dataCollectionEndYear0..1
String
Year that data collection endeddirect
datasetDataCategory1..1
EnumDataCategory
General category of data in dataset; pipe-separated if multipledirect
datasetDataType0..1
String
Specific type of data contained in dataset; pipe-separated if multiple (edirect
datasetExperimentalStrategy0..1
String
Experimental method used to obtain data in dataset; pipe-separated if multipl...direct
datasetExperimentalPlatform0..1
String
Specific platform used to perform experiment; pipe-separated if multiple (edirect
datasetPublication0..*
Uri
URL for publication(s) describing the dataset's rationale and methodology (Pu...direct
accessLimitations0..1
String
Data access limitations, as defined in the GA4GH Data Use Ontology (DUO; can ...direct
accessRequirements0..1
String
Data access requirements, as defined in the GA4GH Data Use Ontology (DUO; can...direct
datasetDbgap0..*
String
dbGaP "phs" accession code(s) required to access the files in this Dataset, i...direct
otherRepository0..1
Uri
URL if dataset is already deposited in a public repository other than dbGaP (...direct
otherAccessAuthority0..1
String
Email or URL for dataset's Access Authority, if not dbGaPdirect
+

Identifier and Mapping Information

+

Annotations

+ + + + + + + + + + + + + +
propertyvalue
requiredFalse
+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

Mappings

+ + + + + + + + + + + + + + + + + +
Mapping TypeMapped Value
selfinclude:Dataset
nativeinclude:Dataset
+

LinkML Source

+ +

Direct

+
+
name: Dataset
+definition_uri: include:Dataset
+annotations:
+  required:
+    tag: required
+    value: 'False'
+description: Information about a specific grouping of data files
+title: Dataset
+from_schema: https://w3id.org/include
+is_a: Thing
+slots:
+- hasStudy
+- datasetName
+- datasetGlobalId
+- datasetExternalId
+- datasetExpectedNumberOfParticipants
+- expectedNumberOfFiles
+- dataCollectionStartYear
+- dataCollectionEndYear
+- datasetDataCategory
+- datasetDataType
+- datasetExperimentalStrategy
+- datasetExperimentalPlatform
+- datasetPublication
+- accessLimitations
+- accessRequirements
+- datasetDbgap
+- otherRepository
+- otherAccessAuthority
+
+
+
+

Induced

+
+
name: Dataset
+definition_uri: include:Dataset
+annotations:
+  required:
+    tag: required
+    value: 'False'
+description: Information about a specific grouping of data files
+title: Dataset
+from_schema: https://w3id.org/include
+is_a: Thing
+attributes:
+  hasStudy:
+    name: hasStudy
+    definition_uri: include:hasStudy
+    description: Link to a Study
+    title: Has Study
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: hasStudy
+    owner: Dataset
+    domain_of:
+    - Biospecimen
+    - DataFile
+    - Dataset
+    - Participant
+    - Condition
+    range: Study
+  datasetName:
+    name: datasetName
+    definition_uri: include:datasetName
+    description: Full name of the dataset, provided by contributor
+    title: Dataset Name
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: datasetName
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: string
+    required: true
+  datasetGlobalId:
+    name: datasetGlobalId
+    definition_uri: include:datasetGlobalId
+    description: Unique Global ID for dataset, generated by DCC
+    title: Dataset Global ID
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: datasetGlobalId
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: string
+    required: false
+  datasetExternalId:
+    name: datasetExternalId
+    definition_uri: include:datasetExternalId
+    description: Unique identifier or code for dataset, if provided by contributor
+    title: Dataset External ID
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: datasetExternalId
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: string
+  datasetExpectedNumberOfParticipants:
+    name: datasetExpectedNumberOfParticipants
+    definition_uri: include:datasetExpectedNumberOfParticipants
+    description: Expected number of participants in this dataset
+    title: Dataset Expected Number of Participants
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: datasetExpectedNumberOfParticipants
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: integer
+    required: true
+  expectedNumberOfFiles:
+    name: expectedNumberOfFiles
+    definition_uri: include:expectedNumberOfFiles
+    description: Expected number of files associated with this dataset
+    title: Expected Number of Files
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: expectedNumberOfFiles
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: integer
+    required: false
+  dataCollectionStartYear:
+    name: dataCollectionStartYear
+    definition_uri: include:dataCollectionStartYear
+    description: Year that data collection started
+    title: Data Collection Start Year
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: dataCollectionStartYear
+    owner: Dataset
+    domain_of:
+    - Dataset
+    required: false
+    pattern: ^1|2\d(3)$|nan
+  dataCollectionEndYear:
+    name: dataCollectionEndYear
+    definition_uri: include:dataCollectionEndYear
+    description: Year that data collection ended
+    title: Data Collection End Year
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: dataCollectionEndYear
+    owner: Dataset
+    domain_of:
+    - Dataset
+    required: false
+    pattern: ^1|2\d(3)$|nan
+  datasetDataCategory:
+    name: datasetDataCategory
+    definition_uri: include:dataCategory
+    description: General category of data in dataset; pipe-separated if multiple
+    title: Dataset Data Category
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: datasetDataCategory
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: enum_DataCategory
+    required: true
+  datasetDataType:
+    name: datasetDataType
+    definition_uri: include:dataType
+    description: Specific type of data contained in dataset; pipe-separated if multiple
+      (e.g. Preprocessed metabolite relative abundance, Absolute protein concentration,
+      Aligned reads, Simple nucleotide variations, GVCF, Gene expression quantifications,
+      Gene fusions, Somatic copy number variations, Somatic structural variations)
+    title: Dataset Data Type
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: datasetDataType
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: string
+  datasetExperimentalStrategy:
+    name: datasetExperimentalStrategy
+    definition_uri: include:experimentalStrategy
+    description: Experimental method used to obtain data in dataset; pipe-separated
+      if multiple (e.g. Whole genome sequencing, RNAseq, Multiplex immunoassay, Mass
+      spec metabolomics)
+    title: Dataset Experimental Strategy
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: datasetExperimentalStrategy
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: string
+  datasetExperimentalPlatform:
+    name: datasetExperimentalPlatform
+    definition_uri: include:experimentalPlatform
+    description: Specific platform used to perform experiment; pipe-separated if multiple
+      (e.g. SOMAscan, MSD, Luminex, Illumina)
+    title: Dataset Experimental Platform
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: datasetExperimentalPlatform
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: string
+  datasetPublication:
+    name: datasetPublication
+    definition_uri: include:datasetPublication
+    description: URL for publication(s) describing the dataset's rationale and methodology
+      (PubMed Central preferred but not required; pipe-separated if multiple)
+    title: Dataset Publication
+    from_schema: https://w3id.org/include
+    rank: 1000
+    multivalued: true
+    alias: datasetPublication
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: uri
+  accessLimitations:
+    name: accessLimitations
+    definition_uri: include:accessLimitations
+    description: Data access limitations, as defined in the GA4GH Data Use Ontology
+      (DUO; can list more than one, pipe separated)
+    title: Access Limitations
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: accessLimitations
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: string
+    required: false
+  accessRequirements:
+    name: accessRequirements
+    definition_uri: include:accessRequirements
+    description: Data access requirements, as defined in the GA4GH Data Use Ontology
+      (DUO; can list more than one, pipe separated)
+    title: Access Requirements
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: accessRequirements
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: string
+    required: false
+  datasetDbgap:
+    name: datasetDbgap
+    definition_uri: include:datasetDbgap
+    description: dbGaP "phs" accession code(s) required to access the files in this
+      Dataset, if applicable (pipe-separated if multiple)
+    title: Dataset dbGaP
+    from_schema: https://w3id.org/include
+    rank: 1000
+    multivalued: true
+    alias: datasetDbgap
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: string
+  otherRepository:
+    name: otherRepository
+    definition_uri: include:otherRepository
+    description: URL if dataset is already deposited in a public repository other
+      than dbGaP (e.g. LONI, Metabolomics Workbench, etc.)
+    title: Other Repository
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: otherRepository
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: uri
+  otherAccessAuthority:
+    name: otherAccessAuthority
+    definition_uri: include:otherAccessAuthority
+    description: Email or URL for dataset's Access Authority, if not dbGaP
+    title: Other Access Authority
+    from_schema: https://w3id.org/include
+    rank: 1000
+    alias: otherAccessAuthority
+    owner: Dataset
+    domain_of:
+    - Dataset
+    range: string
+
+
+
+
+
+
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/EnumClinicalDataSourceType/index.html b/EnumClinicalDataSourceType/index.html new file mode 100644 index 0000000..629fd77 --- /dev/null +++ b/EnumClinicalDataSourceType/index.html @@ -0,0 +1,481 @@ + + + + + + + + + + + + + + + + + + Enum: EnumClinicalDataSourceType - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
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+ + + +
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+ + + +
+
+ + + + + + + + + +

Enum: EnumClinicalDataSourceType

+

URI: EnumClinicalDataSourceType

+

Permissible Values

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
ValueMeaningDescription
medical_recordNoneData obtained directly from medical record
investigator_assessmentNoneData obtained by examination, interview, etc
participant_or_caregiver_reportNoneData obtained from survey, questionnaire, etc
otherNone
unknownNone
+

Slots

+ + + + + + + + + + + + + +
NameDescription
clinicalDataSourceTypeSource(s) of data collected from study participants; pipe-separated if multip...
+

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: enum_clinicalDataSourceType
+definition_uri: include:enum_clinicalDataSourceType
+from_schema: https://w3id.org/include
+rank: 1000
+permissible_values:
+  medical_record:
+    text: medical_record
+    description: Data obtained directly from medical record
+    title: Medical Record
+  investigator_assessment:
+    text: investigator_assessment
+    description: Data obtained by examination, interview, etc. with investigator
+    title: Investigator Assessment
+  participant_or_caregiver_report:
+    text: participant_or_caregiver_report
+    description: Data obtained from survey, questionnaire, etc.
+    title: Participant or Caregiver Report
+  other:
+    text: other
+    title: Other
+  unknown:
+    text: unknown
+    title: Unknown
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/EnumDataCategory/index.html b/EnumDataCategory/index.html new file mode 100644 index 0000000..70334ab --- /dev/null +++ b/EnumDataCategory/index.html @@ -0,0 +1,534 @@ + + + + + + + + + + + + + + + + + + Enum: EnumDataCategory - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
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+ +
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+ + + +
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+ + + +
+
+ + + + + + + + + +

Enum: EnumDataCategory

+

URI: EnumDataCategory

+

Permissible Values

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
ValueMeaningDescription
unharmonized_demographic_clinical_dataNone
harmonized_demographic_clinical_dataNone
genomicsNone
transcriptomicsNone
proteomicsNone
metabolomicsNone
cognitive_behavioralNone
immune_mapsNone
imagingNone
microbiomeNone
otherNone
+

Slots

+ + + + + + + + + + + + + + + + + + + + + +
NameDescription
dataCategoryGeneral category of data in file (e
expectedDataCategoryCategories of data expected to be collected in this study
datasetDataCategoryGeneral category of data in dataset; pipe-separated if multiple
+

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: enum_DataCategory
+definition_uri: include:enum_DataCategory
+from_schema: https://w3id.org/include
+rank: 1000
+permissible_values:
+  unharmonized_demographic_clinical_data:
+    text: unharmonized_demographic_clinical_data
+    title: Unharmonized Demographic/Clinical Data
+  harmonized_demographic_clinical_data:
+    text: harmonized_demographic_clinical_data
+    title: Harmonized Demographic/Clinical Data
+  genomics:
+    text: genomics
+    title: Genomics
+  transcriptomics:
+    text: transcriptomics
+    title: Transcriptomics
+  proteomics:
+    text: proteomics
+    title: Proteomics
+  metabolomics:
+    text: metabolomics
+    title: Metabolomics
+  cognitive_behavioral:
+    text: cognitive_behavioral
+    title: Cognitive/Behavioral
+  immune_maps:
+    text: immune_maps
+    title: Immune Maps
+  imaging:
+    text: imaging
+    title: Imaging
+  microbiome:
+    text: microbiome
+    title: Microbiome
+  other:
+    text: other
+    title: Other
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/EnumGuidType/index.html b/EnumGuidType/index.html new file mode 100644 index 0000000..38c8d54 --- /dev/null +++ b/EnumGuidType/index.html @@ -0,0 +1,465 @@ + + + + + + + + + + + + + + + + + + Enum: EnumGuidType - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
+
+ +
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Enum: EnumGuidType

+

URI: EnumGuidType

+

Permissible Values

+ + + + + + + + + + + + + + + + + + + + + + + + + +
ValueMeaningDescription
ndarNoneGUID generated by NIMH Data Archive (NDA) GUID tool
otherNoneGUID generated by other system
no_guidNoneNo GUIDs used in this study
+

Slots

+ + + + + + + + + + + + + +
NameDescription
guidTypeSystem used to generate globally unique identifiers (GUIDs)
+

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: enum_guidType
+definition_uri: include:enum_guidType
+from_schema: https://w3id.org/include
+rank: 1000
+permissible_values:
+  ndar:
+    text: ndar
+    description: GUID generated by NIMH Data Archive (NDA) GUID tool
+    title: NDAR
+  other:
+    text: other
+    description: GUID generated by other system
+    title: Other
+  no_guid:
+    text: no_guid
+    description: No GUIDs used in this study
+    title: No GUID
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/EnumParticipantLifespanStage/index.html b/EnumParticipantLifespanStage/index.html new file mode 100644 index 0000000..423335b --- /dev/null +++ b/EnumParticipantLifespanStage/index.html @@ -0,0 +1,473 @@ + + + + + + + + + + + + + + + + + + Enum: EnumParticipantLifespanStage - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
+
+ +
+ + + + +
+ + +
+ +
+ + + + + + +
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+ + + +
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+ + + + +
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+ + + +
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+ + + +
+
+
+ + + +
+
+ + + + + + + + + +

Enum: EnumParticipantLifespanStage

+

URI: EnumParticipantLifespanStage

+

Permissible Values

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
ValueMeaningDescription
fetalNone
neonatalNone0-28 days old
pediatricNoneBirth-17 years old
adultNone18+ years old
+

Slots

+ + + + + + + + + + + + + +
NameDescription
participantLifespanStageFocus age group(s) of the study population; pipe-separated if multiple
+

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: enum_participantLifespanStage
+definition_uri: include:enum_participantLifespanStage
+from_schema: https://w3id.org/include
+rank: 1000
+permissible_values:
+  fetal:
+    text: fetal
+    title: Fetal
+  neonatal:
+    text: neonatal
+    description: 0-28 days old
+    title: Neonatal
+  pediatric:
+    text: pediatric
+    description: Birth-17 years old
+    title: Pediatric
+  adult:
+    text: adult
+    description: 18+ years old
+    title: Adult
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/EnumProgram/index.html b/EnumProgram/index.html index 462332c..c29ac8d 100644 --- a/EnumProgram/index.html +++ b/EnumProgram/index.html @@ -366,6 +366,11 @@

Permissible Values

None + +other +None + +

Slots

@@ -379,7 +384,7 @@

Slots

program -Funding source for the study +Funding source(s) for the study (pipe-separated if multiple) @@ -402,6 +407,9 @@

LinkML Source

kf: text: kf title: KF + other: + text: other + title: Other diff --git a/EnumResearchDomain/index.html b/EnumResearchDomain/index.html new file mode 100644 index 0000000..1e3c7cf --- /dev/null +++ b/EnumResearchDomain/index.html @@ -0,0 +1,500 @@ + + + + + + + + + + + + + + + + + + Enum: EnumResearchDomain - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
+
+ +
+ + + + +
+ + +
+ +
+ + + + + + +
+
+ + + +
+
+
+ + + + +
+
+
+ + + +
+
+
+ + + +
+
+
+ + + +
+
+ + + + + + + + + +

Enum: EnumResearchDomain

+

URI: EnumResearchDomain

+

Permissible Values

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
ValueMeaningDescription
behavior_and_behavior_mechanismsmesh:D001520
congenital_heart_defectsmesh:D006330
immune_system_diseasesmesh:D007154
hematologic_diseasesmesh:D006402
sleep_wake_disordersmesh:D012893
all_co_occurring_conditionsmesh:D013568
otherNone
+

Slots

+ + + + + + + + + + + + + +
NameDescription
researchDomainMain research domain(s) of the study, other than Down syndrome; pipe-separate...
+

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: enum_researchDomain
+definition_uri: include:enum_researchDomain
+from_schema: https://w3id.org/include
+rank: 1000
+permissible_values:
+  behavior_and_behavior_mechanisms:
+    text: behavior_and_behavior_mechanisms
+    meaning: mesh:D001520
+    title: Behavior and Behavior Mechanisms
+  congenital_heart_defects:
+    text: congenital_heart_defects
+    meaning: mesh:D006330
+    title: Congenital Heart Defects
+  immune_system_diseases:
+    text: immune_system_diseases
+    meaning: mesh:D007154
+    title: Immune System Diseases
+  hematologic_diseases:
+    text: hematologic_diseases
+    meaning: mesh:D006402
+    title: Hematologic Diseases
+  sleep_wake_disorders:
+    text: sleep_wake_disorders
+    meaning: mesh:D012893
+    title: Sleep Wake Disorders
+  all_co_occurring_conditions:
+    text: all_co_occurring_conditions
+    meaning: mesh:D013568
+    title: All Co-occurring Conditions
+  other:
+    text: other
+    title: Other
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/EnumStudyCode/index.html b/EnumStudyCode/index.html index 53eabbc..87ecfa3 100644 --- a/EnumStudyCode/index.html +++ b/EnumStudyCode/index.html @@ -357,7 +357,7 @@

Permissible Values

-abcds +abc_ds None @@ -382,6 +382,11 @@

Permissible Values

+child_ds +None + + + charge_ds None @@ -494,7 +499,7 @@

Slots

studyCode -Unique identifer for the study, assigned by DCC +Unique identifer for the study (generally a short acronym) @@ -511,8 +516,8 @@

LinkML Source

from_schema: https://w3id.org/include rank: 1000 permissible_values: - abcds: - text: abcds + abc_ds: + text: abc_ds title: ABC-DS ads: text: ads @@ -526,6 +531,9 @@

LinkML Source

bri_dsr: text: bri_dsr title: BRI-DSR + child_ds: + text: child_ds + title: CHILD-DS charge_ds: text: charge_ds title: CHARGE-DS @@ -570,7 +578,7 @@

LinkML Source

title: ECODS exceeds: text: exceeds - title: ExCEEDS + title: EXcEEDS htp: text: htp title: HTP diff --git a/Participant/index.html b/Participant/index.html index c08b007..c796d03 100644 --- a/Participant/index.html +++ b/Participant/index.html @@ -233,31 +233,31 @@

Class: Participant (Participant)

Participant : downSyndromeStatus - Participant --|> enum_downSyndromeStatus : downSyndromeStatus + Participant --> enum_downSyndromeStatus : downSyndromeStatus Participant : ethnicity - Participant --|> enum_ethnicity : ethnicity + Participant --> enum_ethnicity : ethnicity Participant : familyId Participant : familyRelationship - Participant --|> enum_familyRelationship : familyRelationship + Participant --> enum_familyRelationship : familyRelationship Participant : familyType - Participant --|> enum_familyType : familyType + Participant --> enum_familyType : familyType Participant : fatherId Participant : firstPatientEngagementEvent - Participant --|> None : firstPatientEngagementEvent + Participant --> None : firstPatientEngagementEvent Participant : hasStudy - Participant --|> Study : hasStudy + Participant --> Study : hasStudy Participant : motherId @@ -265,7 +265,7 @@

Class: Participant (Participant)

Participant : outcomesVitalStatus - Participant --|> enum_vital_status : outcomesVitalStatus + Participant --> enum_vital_status : outcomesVitalStatus Participant : participantExternalId @@ -273,11 +273,11 @@

Class: Participant (Participant)

Participant : race - Participant --|> enum_race : race + Participant --> enum_race : race Participant : sex - Participant --|> enum_sex : sex + Participant --> enum_sex : sex Participant : siblingId @@ -423,19 +423,19 @@

Usages

-Condition +Biospecimen hasParticipant range Participant -Biospecimen +DataFile hasParticipant range Participant -DataFile +Condition hasParticipant range Participant @@ -546,10 +546,11 @@

Induced

alias: hasStudy owner: Participant domain_of: - - Participant - - Condition - Biospecimen - DataFile + - Dataset + - Participant + - Condition range: Study participantGlobalId: name: participantGlobalId diff --git a/Study/index.html b/Study/index.html index f3be56a..cfd2fbb 100644 --- a/Study/index.html +++ b/Study/index.html @@ -227,17 +227,57 @@

Class: Study (Study)

class Study Thing <|-- Study - Study : dbgap + Study : clinicalDataSourceType + + Study --> enum_clinicalDataSourceType : clinicalDataSourceType + + Study : expectedDataCategory + + Study --> enum_DataCategory : expectedDataCategory + + Study : guidType + + Study --> enum_guidType : guidType + + Study : participantLifespanStage + + Study --> enum_participantLifespanStage : participantLifespanStage + + Study : principalInvestigatorName Study : program - Study --|> enum_program : program + Study --> enum_program : program + + Study : researchDomain + + Study --> enum_researchDomain : researchDomain + + Study : selectionCriteria Study : studyCode - Study --|> enum_studyCode : studyCode + Study --> enum_studyCode : studyCode + + Study : studyContactEmail - Study : studyName + Study : studyContactInstitution + + Study : studyContactName + + Study : studyDbgap + + Study : studyDescription + + Study : studyDesign + + Study : studyExpectedNumberOfParticipants + + Study : studyPublication + + Study : studyTitle + + Study : studyWebsite Study : vbrEmail @@ -268,25 +308,49 @@

Slots

studyCode 1..1
EnumStudyCode -Unique identifer for the study, assigned by DCC +Unique identifer for the study (generally a short acronym) direct -studyName +studyTitle 1..1
String -Full name of the study, chosen by data contributor +Full title of the study direct program -1..1
EnumProgram -Funding source for the study +1..*
EnumProgram +Funding source(s) for the study (pipe-separated if multiple) direct -dbgap -0..1
String -dbGaP study accession code +studyDescription +1..1
String +Brief description of the study (2-4 sentences) +direct + + +principalInvestigatorName +1..*
String +Name(s) of Principal Investigator(s) of this study; pipe-separated if multipl... +direct + + +studyContactName +1..*
String +Name of contact person for this study; pipe-separated if multiple +direct + + +studyContactInstitution +1..*
String +Institution of contact person for this study; pipe-separated if multiple +direct + + +studyContactEmail +1..*
String +Email address of contact person for this study; pipe-separated if multiple direct @@ -297,7 +361,7 @@

Slots

vbrUrl -0..1
String +0..1
Uri Link to Virtual Biorepository request form direct @@ -307,6 +371,72 @@

Slots

Instructions for contacting or requesting samples from Virtual Biorepository direct + +researchDomain +1..*
EnumResearchDomain +Main research domain(s) of the study, other than Down syndrome; pipe-separate... +direct + + +participantLifespanStage +1..*
EnumParticipantLifespanStage +Focus age group(s) of the study population; pipe-separated if multiple +direct + + +selectionCriteria +0..1
String +Brief description of inclusion and/or exclusion criteria for the study +direct + + +studyDesign +1..1
String +Overall design of study, including whether it is longitudinal and whether fam... +direct + + +clinicalDataSourceType +1..*
EnumClinicalDataSourceType +Source(s) of data collected from study participants; pipe-separated if multip... +direct + + +expectedDataCategory +1..*
EnumDataCategory +Categories of data expected to be collected in this study +direct + + +studyWebsite +0..1
Uri +Website for the study +direct + + +studyDbgap +0..*
String +dbGaP "phs" accession code(s) associated with this Study, either for access o... +direct + + +studyPublication +0..*
Uri +URL for publication(s) describing the study's rationale and methodology (PubM... +direct + + +studyExpectedNumberOfParticipants +1..1
Integer +Expected number of participants in this study +direct + + +guidType +1..1
EnumGuidType +System used to generate globally unique identifiers (GUIDs) +direct +

Usages

@@ -321,25 +451,31 @@

Usages

-Participant +Biospecimen hasStudy range Study -Condition +DataFile hasStudy range Study -Biospecimen +Dataset hasStudy range Study -DataFile +Participant +hasStudy +range +Study + + +Condition hasStudy range Study @@ -401,12 +537,27 @@

Direct

is_a: Thing slots: - studyCode -- studyName +- studyTitle - program -- dbgap +- studyDescription +- principalInvestigatorName +- studyContactName +- studyContactInstitution +- studyContactEmail - vbrEmail - vbrUrl - vbrReadme +- researchDomain +- participantLifespanStage +- selectionCriteria +- studyDesign +- clinicalDataSourceType +- expectedDataCategory +- studyWebsite +- studyDbgap +- studyPublication +- studyExpectedNumberOfParticipants +- guidType @@ -426,7 +577,7 @@

Induced

studyCode: name: studyCode definition_uri: include:studyCode - description: Unique identifer for the study, assigned by DCC + description: Unique identifer for the study (generally a short acronym) title: Study Code from_schema: https://w3id.org/include rank: 1000 @@ -436,14 +587,14 @@

Induced

- Study range: enum_studyCode required: true - studyName: - name: studyName - definition_uri: include:studyName - description: Full name of the study, chosen by data contributor - title: Study Name + studyTitle: + name: studyTitle + definition_uri: include:studyTitle + description: Full title of the study + title: Study Title from_schema: https://w3id.org/include rank: 1000 - alias: studyName + alias: studyTitle owner: Study domain_of: - Study @@ -452,33 +603,94 @@

Induced

program: name: program definition_uri: include:program - description: Funding source for the study + description: Funding source(s) for the study (pipe-separated if multiple) title: Program from_schema: https://w3id.org/include rank: 1000 + multivalued: true alias: program owner: Study domain_of: - Study range: enum_program required: true - dbgap: - name: dbgap - definition_uri: include:dbgap - description: dbGaP study accession code - title: dbGaP + studyDescription: + name: studyDescription + definition_uri: include:studyDescription + description: Brief description of the study (2-4 sentences). Should match description + in https://includedcc.org/studies. + title: Study Description + from_schema: https://w3id.org/include + rank: 1000 + alias: studyDescription + owner: Study + domain_of: + - Study + range: string + required: true + principalInvestigatorName: + name: principalInvestigatorName + definition_uri: include:principalInvestigatorName + description: Name(s) of Principal Investigator(s) of this study; pipe-separated + if multiple + title: Principal Investigator Name + from_schema: https://w3id.org/include + rank: 1000 + multivalued: true + alias: principalInvestigatorName + owner: Study + domain_of: + - Study + range: string + required: true + studyContactName: + name: studyContactName + definition_uri: include:studyContactName + description: Name of contact person for this study; pipe-separated if multiple + title: Study Contact Name from_schema: https://w3id.org/include rank: 1000 - alias: dbgap + multivalued: true + alias: studyContactName owner: Study domain_of: - Study range: string + required: true + studyContactInstitution: + name: studyContactInstitution + definition_uri: include:studyContactInstitution + description: Institution of contact person for this study; pipe-separated if multiple + title: Study Contact Institution + from_schema: https://w3id.org/include + rank: 1000 + multivalued: true + alias: studyContactInstitution + owner: Study + domain_of: + - Study + range: string + required: true + studyContactEmail: + name: studyContactEmail + definition_uri: include:studyContactEmail + description: Email address of contact person for this study; pipe-separated if + multiple + title: Study Contact Email + from_schema: https://w3id.org/include + rank: 1000 + multivalued: true + alias: studyContactEmail + owner: Study + domain_of: + - Study + range: string + required: true vbrEmail: name: vbrEmail definition_uri: include:vbrEmail description: Email address for Virtual Biorepository requests/inquiries - title: Virtual Biorepository Email + title: VBR Email from_schema: https://w3id.org/include rank: 1000 alias: vbrEmail @@ -490,19 +702,19 @@

Induced

name: vbrUrl definition_uri: include:vbrUrl description: Link to Virtual Biorepository request form - title: Virtual Biorepository URL + title: VBR URL from_schema: https://w3id.org/include rank: 1000 alias: vbrUrl owner: Study domain_of: - Study - range: string + range: uri vbrReadme: name: vbrReadme definition_uri: include:vbrReadme description: Instructions for contacting or requesting samples from Virtual Biorepository - title: Virtual Biorepository Readme + title: VBR Readme from_schema: https://w3id.org/include rank: 1000 alias: vbrReadme @@ -510,6 +722,157 @@

Induced

domain_of: - Study range: string + researchDomain: + name: researchDomain + definition_uri: include:researchDomain + description: Main research domain(s) of the study, other than Down syndrome; pipe-separated + if multiple + title: Research Domain + from_schema: https://w3id.org/include + rank: 1000 + multivalued: true + alias: researchDomain + owner: Study + domain_of: + - Study + range: enum_researchDomain + required: true + participantLifespanStage: + name: participantLifespanStage + definition_uri: include:participantLifespanStage + description: Focus age group(s) of the study population; pipe-separated if multiple + title: Participant Lifespan Stage + from_schema: https://w3id.org/include + rank: 1000 + multivalued: true + alias: participantLifespanStage + owner: Study + domain_of: + - Study + range: enum_participantLifespanStage + required: true + selectionCriteria: + name: selectionCriteria + definition_uri: include:selectionCriteria + description: Brief description of inclusion and/or exclusion criteria for the + study + title: Selection Criteria + from_schema: https://w3id.org/include + rank: 1000 + alias: selectionCriteria + owner: Study + domain_of: + - Study + range: string + studyDesign: + name: studyDesign + definition_uri: include:studyDesign + description: Overall design of study, including whether it is longitudinal and + whether family members/unrelated controls are also enrolled + title: Study Design + from_schema: https://w3id.org/include + rank: 1000 + alias: studyDesign + owner: Study + domain_of: + - Study + range: string + required: true + clinicalDataSourceType: + name: clinicalDataSourceType + definition_uri: include:clinicalDataSourceType + description: Source(s) of data collected from study participants; pipe-separated + if multiple + title: Clinical Data Source Type + from_schema: https://w3id.org/include + rank: 1000 + multivalued: true + alias: clinicalDataSourceType + owner: Study + domain_of: + - Study + range: enum_clinicalDataSourceType + required: true + expectedDataCategory: + name: expectedDataCategory + definition_uri: include:expectedDataCategory + description: Categories of data expected to be collected in this study + title: Expected Data Category + from_schema: https://w3id.org/include + rank: 1000 + multivalued: true + alias: expectedDataCategory + owner: Study + domain_of: + - Study + range: enum_DataCategory + required: true + studyWebsite: + name: studyWebsite + definition_uri: include:studyWebsite + description: Website for the study + title: Study Website + from_schema: https://w3id.org/include + rank: 1000 + alias: studyWebsite + owner: Study + domain_of: + - Study + range: uri + studyDbgap: + name: studyDbgap + definition_uri: include:studyDbgap + description: dbGaP "phs" accession code(s) associated with this Study, either + for access or informational purposes (pipe-separated if multiple) + title: Study dbGaP + from_schema: https://w3id.org/include + rank: 1000 + multivalued: true + alias: studyDbgap + owner: Study + domain_of: + - Study + range: string + studyPublication: + name: studyPublication + definition_uri: include:studyPublication + description: URL for publication(s) describing the study's rationale and methodology + (PubMed Central preferred but not required; pipe-separated if multiple) + title: Study Publication + from_schema: https://w3id.org/include + rank: 1000 + multivalued: true + alias: studyPublication + owner: Study + domain_of: + - Study + range: uri + studyExpectedNumberOfParticipants: + name: studyExpectedNumberOfParticipants + definition_uri: include:studyExpectedNumberOfParticipants + description: Expected number of participants in this study + title: Study Expected Number of Participants + from_schema: https://w3id.org/include + rank: 1000 + alias: studyExpectedNumberOfParticipants + owner: Study + domain_of: + - Study + range: integer + required: true + guidType: + name: guidType + definition_uri: include:guidType + description: System used to generate globally unique identifiers (GUIDs) + title: GUID Type + from_schema: https://w3id.org/include + rank: 1000 + alias: guidType + owner: Study + domain_of: + - Study + range: enum_guidType + required: true diff --git a/Thing/index.html b/Thing/index.html index 660e919..97b761f 100644 --- a/Thing/index.html +++ b/Thing/index.html @@ -220,22 +220,24 @@

Class: Thing (Thing)

URI: include:Thing

classDiagram class Thing + Thing <|-- Biospecimen + Thing <|-- DataFile Thing <|-- Study + Thing <|-- Dataset Thing <|-- Participant Thing <|-- Condition - Thing <|-- Biospecimen - Thing <|-- DataFile

Inheritance

diff --git a/accessLimitations/index.html b/accessLimitations/index.html new file mode 100644 index 0000000..d342d9e --- /dev/null +++ b/accessLimitations/index.html @@ -0,0 +1,442 @@ + + + + + + + + + + + + + + + + + + Slot: Access Limitations (accessLimitations) - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
+
+ +
+ + + + +
+ + +
+ +
+ + + + + + +
+
+ + + +
+
+
+ + + + +
+
+
+ + + +
+
+
+ + + +
+
+
+ + + +
+
+ + + + + + + + + +

Slot: Access Limitations (accessLimitations)

+

Data access limitations, as defined in the GA4GH Data Use Ontology (DUO; can list more than one, pipe separated)

+

URI: include:accessLimitations

+ + +

Applicable Classes

+ + + + + + + + + + + + + + + +
NameDescriptionModifies Slot
DatasetInformation about a specific grouping of data filesno
+

Properties

+ +

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: accessLimitations
+definition_uri: include:accessLimitations
+description: Data access limitations, as defined in the GA4GH Data Use Ontology (DUO;
+  can list more than one, pipe separated)
+title: Access Limitations
+from_schema: https://w3id.org/include
+rank: 1000
+alias: accessLimitations
+domain_of:
+- Dataset
+range: string
+required: false
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/accessRequirements/index.html b/accessRequirements/index.html new file mode 100644 index 0000000..a540435 --- /dev/null +++ b/accessRequirements/index.html @@ -0,0 +1,442 @@ + + + + + + + + + + + + + + + + + + Slot: Access Requirements (accessRequirements) - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
+
+ +
+ + + + +
+ + +
+ +
+ + + + + + +
+
+ + + +
+
+
+ + + + +
+
+
+ + + +
+
+
+ + + +
+
+
+ + + +
+
+ + + + + + + + + +

Slot: Access Requirements (accessRequirements)

+

Data access requirements, as defined in the GA4GH Data Use Ontology (DUO; can list more than one, pipe separated)

+

URI: include:accessRequirements

+ + +

Applicable Classes

+ + + + + + + + + + + + + + + +
NameDescriptionModifies Slot
DatasetInformation about a specific grouping of data filesno
+

Properties

+ +

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: accessRequirements
+definition_uri: include:accessRequirements
+description: Data access requirements, as defined in the GA4GH Data Use Ontology (DUO;
+  can list more than one, pipe separated)
+title: Access Requirements
+from_schema: https://w3id.org/include
+rank: 1000
+alias: accessRequirements
+domain_of:
+- Dataset
+range: string
+required: false
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/clinicalDataSourceType/index.html b/clinicalDataSourceType/index.html new file mode 100644 index 0000000..a412fe5 --- /dev/null +++ b/clinicalDataSourceType/index.html @@ -0,0 +1,451 @@ + + + + + + + + + + + + + + + + + + Slot: Clinical Data Source Type (clinicalDataSourceType) - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
+
+ +
+ + + + +
+ + +
+ +
+ + + + + + +
+
+ + + +
+
+
+ + + + +
+
+
+ + + +
+
+
+ + + +
+
+
+ + + +
+
+ + + + + + + + + +

Slot: Clinical Data Source Type (clinicalDataSourceType)

+

Source(s) of data collected from study participants; pipe-separated if multiple

+

URI: include:clinicalDataSourceType

+ + +

Applicable Classes

+ + + + + + + + + + + + + + + +
NameDescriptionModifies Slot
StudyGeneral information about the studyno
+

Properties

+ +

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: clinicalDataSourceType
+definition_uri: include:clinicalDataSourceType
+description: Source(s) of data collected from study participants; pipe-separated if
+  multiple
+title: Clinical Data Source Type
+from_schema: https://w3id.org/include
+rank: 1000
+multivalued: true
+alias: clinicalDataSourceType
+domain_of:
+- Study
+range: enum_clinicalDataSourceType
+required: true
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/dataCategory/index.html b/dataCategory/index.html index 7293303..0e3070f 100644 --- a/dataCategory/index.html +++ b/dataCategory/index.html @@ -369,7 +369,7 @@

Applicable Classes

Properties

@@ -385,10 +388,11 @@

LinkML Source

name: program
 definition_uri: include:program
-description: Funding source for the study
+description: Funding source(s) for the study (pipe-separated if multiple)
 title: Program
 from_schema: https://w3id.org/include
 rank: 1000
+multivalued: true
 alias: program
 domain_of:
 - Study
diff --git a/researchDomain/index.html b/researchDomain/index.html
new file mode 100644
index 0000000..2e2440c
--- /dev/null
+++ b/researchDomain/index.html
@@ -0,0 +1,451 @@
+
+
+
+  
+    
+      
+      
+      
+      
+      
+        
+      
+      
+      
+    
+    
+      
+        Slot: Research Domain (researchDomain) - INCLUDE V2 Data Model
+      
+    
+    
+      
+      
+        
+        
+        
+      
+      
+
+    
+    
+    
+      
+        
+        
+        
+        
+        
+      
+    
+    
+    
+    
+      
+
+    
+    
+    
+  
+  
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Slot: Research Domain (researchDomain)

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Main research domain(s) of the study, other than Down syndrome; pipe-separated if multiple

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URI: include:researchDomain

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NameDescriptionModifies Slot
StudyGeneral information about the studyno
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Identifier and Mapping Information

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  • from schema: https://w3id.org/include
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name: researchDomain
+definition_uri: include:researchDomain
+description: Main research domain(s) of the study, other than Down syndrome; pipe-separated
+  if multiple
+title: Research Domain
+from_schema: https://w3id.org/include
+rank: 1000
+multivalued: true
+alias: researchDomain
+domain_of:
+- Study
+range: enum_researchDomain
+required: true
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+ + + + + + + + + + \ No newline at end of file diff --git a/search/search_index.json b/search/search_index.json index 5ea6190..6eaea4e 100644 --- a/search/search_index.json +++ b/search/search_index.json @@ -1 +1 @@ -{"config":{"indexing":"full","lang":["en"],"min_search_length":3,"prebuild_index":false,"separator":"[\\s\\-]+"},"docs":[{"location":"","text":"include-schema URI: https://w3id.org/include Name: include-schema Classes Class Description Thing Highest Level Class Biospecimen A Biospecimen Collected from A Participant Condition Co-occurring conditions and other observations for the participant DataFile A DataFile Associated with a Participant or Study or Biospecimen Participant Demographic and clinical information about the participant Study General information about the study Slots Slot Description accessUrl URL/URI to file repository location ageAtBiospecimenCollection Age in days of participant at time of biospecimen collection ageAtConditionMeasureObservation Age in days at which Condition or Measure was observed, recorded, or diagnose... ageAtFirstPatientEngagement Age in days of Participant at first recorded study event (enrollment, visit, ... ageAtLastVitalStatus Age in days when participant's vital status was last recorded biospecimenStorage Method by which Container is stored (e collectionExternalId Identifier for the eldest sample in a lineage of processed, pooled, or aliquo... collectionGlobalId INCLUDE global identifier for the eldest sample in a lineage, assigned by DCC collectionSampleType Type of biological material comprising the Collected Sample (e concentration Concentration of sample in container concentrationUnit Unit of sample concentration conditionDataSource Whether Condition information was obtained by the investigator or reported by... conditionInterpretation Whether Condition was observed or not conditionMeasureSourceText Co-occurring Condition (phenotype or diagnosis) or Measure (observation with ... conditionStatus Whether the Condition is ongoing, has been resolved, or this is a general his... containerAvailability Whether or not the container is potentially available for sharing through the... containerExternalId Identifier for specific container/aliquot of sample, assigned by data contrib... containerGlobalId INCLUDE global identifier for specific container/aliquot of sample, assigned ... dataAccess Type of access control on this file, determined by DCC dataCategory General category of data in file (e dataType Specific type of data contained in file (e dbgap dbGaP study accession code downSyndromeStatus Down Syndrome status of participant ethnicity Ethnicity of Participant eventId Identifier for event (Visit, Survey completion, Sample collection, etc eventType Type of event for which Event ID is given (Visit, Survey completion, Sample c... experimentalPlatform Specific platform used to perform experiment (e experimentalStrategy Experimental method used to obtain data in file (e familyId Unique identifer for family to which Participant belongs, assigned by data co... familyRelationship Relationship of Participant to proband familyType Structure of family members participating in the study fatherId Participant External ID for Participant's father (NA if Participant is not th... fileExternalId Unique identifier for data file, assigned by data contributor fileFormat Format of file (e fileGlobalId INCLUDE global file identifier, assigned by DCC fileHash md5 hash of this file for validation (if known) fileName Name of file, assigned by data contributor fileSize Size of file, if known (mainly important if large) fileSizeUnit Unit of file size firstPatientEngagementEvent Event for which Age at First Patient Engagement is given (e hasBiospecimen Link to a Biospecimen hasParticipant Link to a Participant hasStudy Link to a Study hpoCode Code for Condition in the Human Phenotype Ontology (HPO) hpoLabel Label for Condition in the Human Phenotype Ontology (HPO) laboratoryProcedure Procedure by which Sample was derived from Parent Sample (e maxoCode Code for condition in the Medical Action Ontology (MAXO) maxoLabel Label for Condition in the Medical Action Ontology (MAXO) measureUnit Unit that is associated with Measure Value (e measureValue Numeric value of Measure mondoCode Code for Condition in the Mondo Disease Ontology (Mondo) mondoLabel Label for Condition in the Mondo Disease Ontology (MONDO) motherId Participant External ID for Participant's mother (NA if Participant is not th... otherCode Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) otherFamilyMemberId Participant External ID for Participant's other family members (NA if Partici... otherLabel Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) outcomesVitalStatus Whether participant is alive or dead parentSampleExternalId Identifier for the direct parent from which Sample was derived, processed, po... parentSampleGlobalId INCLUDE global identifier for the direct parent from which Sample was derived... parentSampleType Type of biological material comprising the Parent Sample (e participantExternalId Unique, de-identified identifier for the participant, assigned by data contri... participantGlobalId Unique INCLUDE global identifier for the participant, assigned by DCC program Funding source for the study publicationDoi DOI of publication associated with this file, if published race Race of Participant sampleAvailability Whether or not the sample is potentially available for sharing through the Vi... sampleExternalId Unique identifier for sample, assigned by data contributor sampleGlobalId INCLUDE global identifier for sample, assigned by DCC sampleType Type of biological material comprising the Sample (e sex Sex of Participant siblingId Participant External ID for Participant's sibling(s) (NA if Participant is no... studyCode Unique identifer for the study, assigned by DCC studyName Full name of the study, chosen by data contributor vbrEmail Email address for Virtual Biorepository requests/inquiries vbrReadme Instructions for contacting or requesting samples from Virtual Biorepository vbrUrl Link to Virtual Biorepository request form volume Amount of sample in container volumeUnit Unit of sample volume Enumerations Enumeration Description EnumConditionDataSource EnumConditionInterpretation EnumConditionStatus EnumContainerAvailability EnumDataAccess EnumDownSyndromeStatus EnumEthnicity EnumFamilyRelationship EnumFamilyType EnumProgram EnumRace EnumSampleAvailability EnumSex EnumStudyCode EnumVitalStatus Types Type Description Boolean A binary (true or false) value Curie a compact URI Date a date (year, month and day) in an idealized calendar DateOrDatetime Either a date or a datetime Datetime The combination of a date and time Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci... Double A real number that conforms to the xsd:double specification Float A real number that conforms to the xsd:float specification Integer An integer Jsonpath A string encoding a JSON Path Jsonpointer A string encoding a JSON Pointer Ncname Prefix part of CURIE Nodeidentifier A URI, CURIE or BNODE that represents a node in a model Objectidentifier A URI or CURIE that represents an object in the model Sparqlpath A string encoding a SPARQL Property Path String A character string Time A time object represents a (local) time of day, independent of any particular... Uri a complete URI Uriorcurie a URI or a CURIE Subsets Subset Description","title":"Index"},{"location":"#include-schema","text":"URI: https://w3id.org/include Name: include-schema","title":"include-schema"},{"location":"#classes","text":"Class Description Thing Highest Level Class Biospecimen A Biospecimen Collected from A Participant Condition Co-occurring conditions and other observations for the participant DataFile A DataFile Associated with a Participant or Study or Biospecimen Participant Demographic and clinical information about the participant Study General information about the study","title":"Classes"},{"location":"#slots","text":"Slot Description accessUrl URL/URI to file repository location ageAtBiospecimenCollection Age in days of participant at time of biospecimen collection ageAtConditionMeasureObservation Age in days at which Condition or Measure was observed, recorded, or diagnose... ageAtFirstPatientEngagement Age in days of Participant at first recorded study event (enrollment, visit, ... ageAtLastVitalStatus Age in days when participant's vital status was last recorded biospecimenStorage Method by which Container is stored (e collectionExternalId Identifier for the eldest sample in a lineage of processed, pooled, or aliquo... collectionGlobalId INCLUDE global identifier for the eldest sample in a lineage, assigned by DCC collectionSampleType Type of biological material comprising the Collected Sample (e concentration Concentration of sample in container concentrationUnit Unit of sample concentration conditionDataSource Whether Condition information was obtained by the investigator or reported by... conditionInterpretation Whether Condition was observed or not conditionMeasureSourceText Co-occurring Condition (phenotype or diagnosis) or Measure (observation with ... conditionStatus Whether the Condition is ongoing, has been resolved, or this is a general his... containerAvailability Whether or not the container is potentially available for sharing through the... containerExternalId Identifier for specific container/aliquot of sample, assigned by data contrib... containerGlobalId INCLUDE global identifier for specific container/aliquot of sample, assigned ... dataAccess Type of access control on this file, determined by DCC dataCategory General category of data in file (e dataType Specific type of data contained in file (e dbgap dbGaP study accession code downSyndromeStatus Down Syndrome status of participant ethnicity Ethnicity of Participant eventId Identifier for event (Visit, Survey completion, Sample collection, etc eventType Type of event for which Event ID is given (Visit, Survey completion, Sample c... experimentalPlatform Specific platform used to perform experiment (e experimentalStrategy Experimental method used to obtain data in file (e familyId Unique identifer for family to which Participant belongs, assigned by data co... familyRelationship Relationship of Participant to proband familyType Structure of family members participating in the study fatherId Participant External ID for Participant's father (NA if Participant is not th... fileExternalId Unique identifier for data file, assigned by data contributor fileFormat Format of file (e fileGlobalId INCLUDE global file identifier, assigned by DCC fileHash md5 hash of this file for validation (if known) fileName Name of file, assigned by data contributor fileSize Size of file, if known (mainly important if large) fileSizeUnit Unit of file size firstPatientEngagementEvent Event for which Age at First Patient Engagement is given (e hasBiospecimen Link to a Biospecimen hasParticipant Link to a Participant hasStudy Link to a Study hpoCode Code for Condition in the Human Phenotype Ontology (HPO) hpoLabel Label for Condition in the Human Phenotype Ontology (HPO) laboratoryProcedure Procedure by which Sample was derived from Parent Sample (e maxoCode Code for condition in the Medical Action Ontology (MAXO) maxoLabel Label for Condition in the Medical Action Ontology (MAXO) measureUnit Unit that is associated with Measure Value (e measureValue Numeric value of Measure mondoCode Code for Condition in the Mondo Disease Ontology (Mondo) mondoLabel Label for Condition in the Mondo Disease Ontology (MONDO) motherId Participant External ID for Participant's mother (NA if Participant is not th... otherCode Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) otherFamilyMemberId Participant External ID for Participant's other family members (NA if Partici... otherLabel Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) outcomesVitalStatus Whether participant is alive or dead parentSampleExternalId Identifier for the direct parent from which Sample was derived, processed, po... parentSampleGlobalId INCLUDE global identifier for the direct parent from which Sample was derived... parentSampleType Type of biological material comprising the Parent Sample (e participantExternalId Unique, de-identified identifier for the participant, assigned by data contri... participantGlobalId Unique INCLUDE global identifier for the participant, assigned by DCC program Funding source for the study publicationDoi DOI of publication associated with this file, if published race Race of Participant sampleAvailability Whether or not the sample is potentially available for sharing through the Vi... sampleExternalId Unique identifier for sample, assigned by data contributor sampleGlobalId INCLUDE global identifier for sample, assigned by DCC sampleType Type of biological material comprising the Sample (e sex Sex of Participant siblingId Participant External ID for Participant's sibling(s) (NA if Participant is no... studyCode Unique identifer for the study, assigned by DCC studyName Full name of the study, chosen by data contributor vbrEmail Email address for Virtual Biorepository requests/inquiries vbrReadme Instructions for contacting or requesting samples from Virtual Biorepository vbrUrl Link to Virtual Biorepository request form volume Amount of sample in container volumeUnit Unit of sample volume","title":"Slots"},{"location":"#enumerations","text":"Enumeration Description EnumConditionDataSource EnumConditionInterpretation EnumConditionStatus EnumContainerAvailability EnumDataAccess EnumDownSyndromeStatus EnumEthnicity EnumFamilyRelationship EnumFamilyType EnumProgram EnumRace EnumSampleAvailability EnumSex EnumStudyCode EnumVitalStatus","title":"Enumerations"},{"location":"#types","text":"Type Description Boolean A binary (true or false) value Curie a compact URI Date a date (year, month and day) in an idealized calendar DateOrDatetime Either a date or a datetime Datetime The combination of a date and time Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci... Double A real number that conforms to the xsd:double specification Float A real number that conforms to the xsd:float specification Integer An integer Jsonpath A string encoding a JSON Path Jsonpointer A string encoding a JSON Pointer Ncname Prefix part of CURIE Nodeidentifier A URI, CURIE or BNODE that represents a node in a model Objectidentifier A URI or CURIE that represents an object in the model Sparqlpath A string encoding a SPARQL Property Path String A character string Time A time object represents a (local) time of day, independent of any particular... Uri a complete URI Uriorcurie a URI or a CURIE","title":"Types"},{"location":"#subsets","text":"Subset Description","title":"Subsets"},{"location":"Biospecimen/","text":"Class: Biospecimen (Biospecimen) A Biospecimen Collected from A Participant URI: include:Biospecimen classDiagram class Biospecimen Thing <|-- Biospecimen Biospecimen : ageAtBiospecimenCollection Biospecimen : biospecimenStorage Biospecimen : collectionExternalId Biospecimen : collectionGlobalId Biospecimen : collectionSampleType Biospecimen : concentration Biospecimen : concentrationUnit Biospecimen : containerAvailability Biospecimen --|> enum_containerAvailability : containerAvailability Biospecimen : containerExternalId Biospecimen : containerGlobalId Biospecimen : hasParticipant Biospecimen --|> Participant : hasParticipant Biospecimen : hasStudy Biospecimen --|> Study : hasStudy Biospecimen : laboratoryProcedure Biospecimen : parentSampleExternalId Biospecimen : parentSampleGlobalId Biospecimen : parentSampleType Biospecimen : sampleAvailability Biospecimen --|> enum_sampleAvailability : sampleAvailability Biospecimen : sampleExternalId Biospecimen : sampleGlobalId Biospecimen : sampleType Biospecimen : volume Biospecimen : volumeUnit Inheritance Thing Biospecimen Slots Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct hasParticipant 0..1 Participant Link to a Participant direct sampleGlobalId 1..1 String INCLUDE global identifier for sample, assigned by DCC direct sampleExternalId 1..1 String Unique identifier for sample, assigned by data contributor direct sampleType 1..1 String Type of biological material comprising the Sample (e direct ageAtBiospecimenCollection 0..1 Integer Age in days of participant at time of biospecimen collection direct parentSampleGlobalId 0..1 String INCLUDE global identifier for the direct parent from which Sample was derived... direct parentSampleExternalId 0..1 String Identifier for the direct parent from which Sample was derived, processed, po... direct parentSampleType 0..1 String Type of biological material comprising the Parent Sample (e direct collectionGlobalId 0..1 String INCLUDE global identifier for the eldest sample in a lineage, assigned by DCC direct collectionExternalId 0..1 String Identifier for the eldest sample in a lineage of processed, pooled, or aliquo... direct collectionSampleType 0..1 String Type of biological material comprising the Collected Sample (e direct containerGlobalId 0..1 String INCLUDE global identifier for specific container/aliquot of sample, assigned ... direct containerExternalId 0..1 String Identifier for specific container/aliquot of sample, assigned by data contrib... direct volume 0..1 Float Amount of sample in container direct volumeUnit 0..1 String Unit of sample volume direct concentration 0..1 Float Concentration of sample in container direct concentrationUnit 0..1 String Unit of sample concentration direct laboratoryProcedure 0..1 String Procedure by which Sample was derived from Parent Sample (e direct biospecimenStorage 0..1 String Method by which Container is stored (e direct sampleAvailability 1..1 EnumSampleAvailability Whether or not the sample is potentially available for sharing through the Vi... direct containerAvailability 0..1 EnumContainerAvailability Whether or not the container is potentially available for sharing through the... direct Usages used by used in type used DataFile hasBiospecimen range Biospecimen Identifier and Mapping Information Annotations property value required True Schema Source from schema: https://w3id.org/include Mappings Mapping Type Mapped Value self include:Biospecimen native include:Biospecimen LinkML Source Direct name: Biospecimen definition_uri: include:Biospecimen annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,Participant,DataFile description: A Biospecimen Collected from A Participant title: Biospecimen from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - hasParticipant - sampleGlobalId - sampleExternalId - sampleType - ageAtBiospecimenCollection - parentSampleGlobalId - parentSampleExternalId - parentSampleType - collectionGlobalId - collectionExternalId - collectionSampleType - containerGlobalId - containerExternalId - volume - volumeUnit - concentration - concentrationUnit - laboratoryProcedure - biospecimenStorage - sampleAvailability - containerAvailability Induced name: Biospecimen definition_uri: include:Biospecimen annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,Participant,DataFile description: A Biospecimen Collected from A Participant title: Biospecimen from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: Biospecimen domain_of: - Participant - Condition - Biospecimen - DataFile range: Study hasParticipant: name: hasParticipant definition_uri: include:hasParticipant description: Link to a Participant title: Has Participant from_schema: https://w3id.org/include rank: 1000 alias: hasParticipant owner: Biospecimen domain_of: - Condition - Biospecimen - DataFile range: Participant sampleGlobalId: name: sampleGlobalId definition_uri: include:sampleGlobalId description: INCLUDE global identifier for sample, assigned by DCC title: Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: sampleGlobalId owner: Biospecimen domain_of: - Biospecimen range: string required: true sampleExternalId: name: sampleExternalId definition_uri: include:sampleExternalId description: Unique identifier for sample, assigned by data contributor. A sample is a unique biological material; two samples with two different IDs are biologically distinct. title: Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: sampleExternalId owner: Biospecimen domain_of: - Biospecimen range: string required: true sampleType: name: sampleType definition_uri: include:sampleType description: Type of biological material comprising the Sample (e.g. Plasma, White blood cells, Red blood cells, DNA, RNA, Peripheral blood mononuclear cells, CD4+ Tconv cells, NK cells, Monocytes, CD8+ T cells, B cells, Granulocytes, Treg cells) title: Sample Type from_schema: https://w3id.org/include rank: 1000 alias: sampleType owner: Biospecimen domain_of: - Biospecimen range: string required: true ageAtBiospecimenCollection: name: ageAtBiospecimenCollection definition_uri: include:ageAtBiospecimenCollection description: Age in days of participant at time of biospecimen collection title: Age At Biospecimen Collection from_schema: https://w3id.org/include rank: 1000 alias: ageAtBiospecimenCollection owner: Biospecimen domain_of: - Biospecimen range: integer parentSampleGlobalId: name: parentSampleGlobalId definition_uri: include:parentSampleGlobalId description: INCLUDE global identifier for the direct parent from which Sample was derived, assigned by DCC title: Parent Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleGlobalId owner: Biospecimen domain_of: - Biospecimen range: string parentSampleExternalId: name: parentSampleExternalId definition_uri: include:parentSampleExternalId description: Identifier for the direct parent from which Sample was derived, processed, pooled, etc. (if applicable); assigned by data contributor title: Parent Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleExternalId owner: Biospecimen domain_of: - Biospecimen range: string parentSampleType: name: parentSampleType definition_uri: include:parentSampleType description: Type of biological material comprising the Parent Sample (e.g. Peripheral Whole Blood, Derived Cell Line, Saliva, Whole blood, WBCs) title: Parent Sample Type from_schema: https://w3id.org/include rank: 1000 alias: parentSampleType owner: Biospecimen domain_of: - Biospecimen range: string collectionGlobalId: name: collectionGlobalId definition_uri: include:collectionGlobalId description: INCLUDE global identifier for the eldest sample in a lineage, assigned by DCC title: Collection Global ID from_schema: https://w3id.org/include rank: 1000 alias: collectionGlobalId owner: Biospecimen domain_of: - Biospecimen range: string collectionExternalId: name: collectionExternalId definition_uri: include:collectionExternalId description: Identifier for the eldest sample in a lineage of processed, pooled, or aliquoted samples - typically the material actually collected from the Participant. This may be the same as Parent Sample ID or Sample ID (if no processing was performed). Assigned by data contributor. title: Collection External ID from_schema: https://w3id.org/include rank: 1000 alias: collectionExternalId owner: Biospecimen domain_of: - Biospecimen range: string collectionSampleType: name: collectionSampleType definition_uri: include:collectionSampleType description: Type of biological material comprising the Collected Sample (e.g. Whole blood, Not reported, Saliva, Derived cell line) title: Collection Sample Type from_schema: https://w3id.org/include rank: 1000 alias: collectionSampleType owner: Biospecimen domain_of: - Biospecimen range: string containerGlobalId: name: containerGlobalId definition_uri: include:containerGlobalId description: INCLUDE global identifier for specific container/aliquot of sample, assigned by DCC title: Container Global ID from_schema: https://w3id.org/include rank: 1000 alias: containerGlobalId owner: Biospecimen domain_of: - Biospecimen range: string containerExternalId: name: containerExternalId definition_uri: include:containerExternalId description: Identifier for specific container/aliquot of sample, assigned by data contributor. For example, distinct aliquots of a sample will have the same Sample ID but different Container IDs. title: Container External ID from_schema: https://w3id.org/include rank: 1000 alias: containerExternalId owner: Biospecimen domain_of: - Biospecimen range: string volume: name: volume definition_uri: include:volume description: Amount of sample in container title: Volume from_schema: https://w3id.org/include rank: 1000 alias: volume owner: Biospecimen domain_of: - Biospecimen range: float volumeUnit: name: volumeUnit definition_uri: include:volumeUnit description: Unit of sample volume title: Volume Unit from_schema: https://w3id.org/include rank: 1000 alias: volumeUnit owner: Biospecimen domain_of: - Biospecimen range: string concentration: name: concentration definition_uri: include:concentration description: Concentration of sample in container title: Concentration from_schema: https://w3id.org/include rank: 1000 alias: concentration owner: Biospecimen domain_of: - Biospecimen range: float concentrationUnit: name: concentrationUnit definition_uri: include:concentrationUnit description: Unit of sample concentration title: Concentration Unit from_schema: https://w3id.org/include rank: 1000 alias: concentrationUnit owner: Biospecimen domain_of: - Biospecimen range: string laboratoryProcedure: name: laboratoryProcedure definition_uri: include:laboratoryProcedure description: Procedure by which Sample was derived from Parent Sample (e.g. Centrifugation, RBC lysis, Lyse/fix buffer, FACS, PAXgene DNA, PAXgene RNA, Qiagen Allprep, Ficoll) title: Laboratory Procedure from_schema: https://w3id.org/include rank: 1000 alias: laboratoryProcedure owner: Biospecimen domain_of: - Biospecimen range: string biospecimenStorage: name: biospecimenStorage definition_uri: include:biospecimenStorage description: Method by which Container is stored (e.g. Minus 80 degrees Celsius, Liquid nitrogen storage) title: Biospecimen Storage from_schema: https://w3id.org/include rank: 1000 alias: biospecimenStorage owner: Biospecimen domain_of: - Biospecimen range: string sampleAvailability: name: sampleAvailability definition_uri: include:sampleAvailability description: Whether or not the sample is potentially available for sharing through the Virtual Biorepository title: Sample Availability from_schema: https://w3id.org/include rank: 1000 alias: sampleAvailability owner: Biospecimen domain_of: - Biospecimen range: enum_sampleAvailability required: true containerAvailability: name: containerAvailability definition_uri: include:containerAvailability description: Whether or not the container is potentially available for sharing through the Virtual Biorepository title: Container Availability from_schema: https://w3id.org/include rank: 1000 alias: containerAvailability owner: Biospecimen domain_of: - Biospecimen range: enum_containerAvailability","title":"Class: Biospecimen (Biospecimen)"},{"location":"Biospecimen/#class-biospecimen-biospecimen","text":"A Biospecimen Collected from A Participant URI: include:Biospecimen classDiagram class Biospecimen Thing <|-- Biospecimen Biospecimen : ageAtBiospecimenCollection Biospecimen : biospecimenStorage Biospecimen : collectionExternalId Biospecimen : collectionGlobalId Biospecimen : collectionSampleType Biospecimen : concentration Biospecimen : concentrationUnit Biospecimen : containerAvailability Biospecimen --|> enum_containerAvailability : containerAvailability Biospecimen : containerExternalId Biospecimen : containerGlobalId Biospecimen : hasParticipant Biospecimen --|> Participant : hasParticipant Biospecimen : hasStudy Biospecimen --|> Study : hasStudy Biospecimen : laboratoryProcedure Biospecimen : parentSampleExternalId Biospecimen : parentSampleGlobalId Biospecimen : parentSampleType Biospecimen : sampleAvailability Biospecimen --|> enum_sampleAvailability : sampleAvailability Biospecimen : sampleExternalId Biospecimen : sampleGlobalId Biospecimen : sampleType Biospecimen : volume Biospecimen : volumeUnit","title":"Class: Biospecimen (Biospecimen)"},{"location":"Biospecimen/#inheritance","text":"Thing Biospecimen","title":"Inheritance"},{"location":"Biospecimen/#slots","text":"Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct hasParticipant 0..1 Participant Link to a Participant direct sampleGlobalId 1..1 String INCLUDE global identifier for sample, assigned by DCC direct sampleExternalId 1..1 String Unique identifier for sample, assigned by data contributor direct sampleType 1..1 String Type of biological material comprising the Sample (e direct ageAtBiospecimenCollection 0..1 Integer Age in days of participant at time of biospecimen collection direct parentSampleGlobalId 0..1 String INCLUDE global identifier for the direct parent from which Sample was derived... direct parentSampleExternalId 0..1 String Identifier for the direct parent from which Sample was derived, processed, po... direct parentSampleType 0..1 String Type of biological material comprising the Parent Sample (e direct collectionGlobalId 0..1 String INCLUDE global identifier for the eldest sample in a lineage, assigned by DCC direct collectionExternalId 0..1 String Identifier for the eldest sample in a lineage of processed, pooled, or aliquo... direct collectionSampleType 0..1 String Type of biological material comprising the Collected Sample (e direct containerGlobalId 0..1 String INCLUDE global identifier for specific container/aliquot of sample, assigned ... direct containerExternalId 0..1 String Identifier for specific container/aliquot of sample, assigned by data contrib... direct volume 0..1 Float Amount of sample in container direct volumeUnit 0..1 String Unit of sample volume direct concentration 0..1 Float Concentration of sample in container direct concentrationUnit 0..1 String Unit of sample concentration direct laboratoryProcedure 0..1 String Procedure by which Sample was derived from Parent Sample (e direct biospecimenStorage 0..1 String Method by which Container is stored (e direct sampleAvailability 1..1 EnumSampleAvailability Whether or not the sample is potentially available for sharing through the Vi... direct containerAvailability 0..1 EnumContainerAvailability Whether or not the container is potentially available for sharing through the... direct","title":"Slots"},{"location":"Biospecimen/#usages","text":"used by used in type used DataFile hasBiospecimen range Biospecimen","title":"Usages"},{"location":"Biospecimen/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Biospecimen/#annotations","text":"property value required True","title":"Annotations"},{"location":"Biospecimen/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Biospecimen/#mappings","text":"Mapping Type Mapped Value self include:Biospecimen native include:Biospecimen","title":"Mappings"},{"location":"Biospecimen/#linkml-source","text":"","title":"LinkML Source"},{"location":"Biospecimen/#direct","text":"name: Biospecimen definition_uri: include:Biospecimen annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,Participant,DataFile description: A Biospecimen Collected from A Participant title: Biospecimen from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - hasParticipant - sampleGlobalId - sampleExternalId - sampleType - ageAtBiospecimenCollection - parentSampleGlobalId - parentSampleExternalId - parentSampleType - collectionGlobalId - collectionExternalId - collectionSampleType - containerGlobalId - containerExternalId - volume - volumeUnit - concentration - concentrationUnit - laboratoryProcedure - biospecimenStorage - sampleAvailability - containerAvailability","title":"Direct"},{"location":"Biospecimen/#induced","text":"name: Biospecimen definition_uri: include:Biospecimen annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,Participant,DataFile description: A Biospecimen Collected from A Participant title: Biospecimen from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: Biospecimen domain_of: - Participant - Condition - Biospecimen - DataFile range: Study hasParticipant: name: hasParticipant definition_uri: include:hasParticipant description: Link to a Participant title: Has Participant from_schema: https://w3id.org/include rank: 1000 alias: hasParticipant owner: Biospecimen domain_of: - Condition - Biospecimen - DataFile range: Participant sampleGlobalId: name: sampleGlobalId definition_uri: include:sampleGlobalId description: INCLUDE global identifier for sample, assigned by DCC title: Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: sampleGlobalId owner: Biospecimen domain_of: - Biospecimen range: string required: true sampleExternalId: name: sampleExternalId definition_uri: include:sampleExternalId description: Unique identifier for sample, assigned by data contributor. A sample is a unique biological material; two samples with two different IDs are biologically distinct. title: Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: sampleExternalId owner: Biospecimen domain_of: - Biospecimen range: string required: true sampleType: name: sampleType definition_uri: include:sampleType description: Type of biological material comprising the Sample (e.g. Plasma, White blood cells, Red blood cells, DNA, RNA, Peripheral blood mononuclear cells, CD4+ Tconv cells, NK cells, Monocytes, CD8+ T cells, B cells, Granulocytes, Treg cells) title: Sample Type from_schema: https://w3id.org/include rank: 1000 alias: sampleType owner: Biospecimen domain_of: - Biospecimen range: string required: true ageAtBiospecimenCollection: name: ageAtBiospecimenCollection definition_uri: include:ageAtBiospecimenCollection description: Age in days of participant at time of biospecimen collection title: Age At Biospecimen Collection from_schema: https://w3id.org/include rank: 1000 alias: ageAtBiospecimenCollection owner: Biospecimen domain_of: - Biospecimen range: integer parentSampleGlobalId: name: parentSampleGlobalId definition_uri: include:parentSampleGlobalId description: INCLUDE global identifier for the direct parent from which Sample was derived, assigned by DCC title: Parent Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleGlobalId owner: Biospecimen domain_of: - Biospecimen range: string parentSampleExternalId: name: parentSampleExternalId definition_uri: include:parentSampleExternalId description: Identifier for the direct parent from which Sample was derived, processed, pooled, etc. (if applicable); assigned by data contributor title: Parent Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleExternalId owner: Biospecimen domain_of: - Biospecimen range: string parentSampleType: name: parentSampleType definition_uri: include:parentSampleType description: Type of biological material comprising the Parent Sample (e.g. Peripheral Whole Blood, Derived Cell Line, Saliva, Whole blood, WBCs) title: Parent Sample Type from_schema: https://w3id.org/include rank: 1000 alias: parentSampleType owner: Biospecimen domain_of: - Biospecimen range: string collectionGlobalId: name: collectionGlobalId definition_uri: include:collectionGlobalId description: INCLUDE global identifier for the eldest sample in a lineage, assigned by DCC title: Collection Global ID from_schema: https://w3id.org/include rank: 1000 alias: collectionGlobalId owner: Biospecimen domain_of: - Biospecimen range: string collectionExternalId: name: collectionExternalId definition_uri: include:collectionExternalId description: Identifier for the eldest sample in a lineage of processed, pooled, or aliquoted samples - typically the material actually collected from the Participant. This may be the same as Parent Sample ID or Sample ID (if no processing was performed). Assigned by data contributor. title: Collection External ID from_schema: https://w3id.org/include rank: 1000 alias: collectionExternalId owner: Biospecimen domain_of: - Biospecimen range: string collectionSampleType: name: collectionSampleType definition_uri: include:collectionSampleType description: Type of biological material comprising the Collected Sample (e.g. Whole blood, Not reported, Saliva, Derived cell line) title: Collection Sample Type from_schema: https://w3id.org/include rank: 1000 alias: collectionSampleType owner: Biospecimen domain_of: - Biospecimen range: string containerGlobalId: name: containerGlobalId definition_uri: include:containerGlobalId description: INCLUDE global identifier for specific container/aliquot of sample, assigned by DCC title: Container Global ID from_schema: https://w3id.org/include rank: 1000 alias: containerGlobalId owner: Biospecimen domain_of: - Biospecimen range: string containerExternalId: name: containerExternalId definition_uri: include:containerExternalId description: Identifier for specific container/aliquot of sample, assigned by data contributor. For example, distinct aliquots of a sample will have the same Sample ID but different Container IDs. title: Container External ID from_schema: https://w3id.org/include rank: 1000 alias: containerExternalId owner: Biospecimen domain_of: - Biospecimen range: string volume: name: volume definition_uri: include:volume description: Amount of sample in container title: Volume from_schema: https://w3id.org/include rank: 1000 alias: volume owner: Biospecimen domain_of: - Biospecimen range: float volumeUnit: name: volumeUnit definition_uri: include:volumeUnit description: Unit of sample volume title: Volume Unit from_schema: https://w3id.org/include rank: 1000 alias: volumeUnit owner: Biospecimen domain_of: - Biospecimen range: string concentration: name: concentration definition_uri: include:concentration description: Concentration of sample in container title: Concentration from_schema: https://w3id.org/include rank: 1000 alias: concentration owner: Biospecimen domain_of: - Biospecimen range: float concentrationUnit: name: concentrationUnit definition_uri: include:concentrationUnit description: Unit of sample concentration title: Concentration Unit from_schema: https://w3id.org/include rank: 1000 alias: concentrationUnit owner: Biospecimen domain_of: - Biospecimen range: string laboratoryProcedure: name: laboratoryProcedure definition_uri: include:laboratoryProcedure description: Procedure by which Sample was derived from Parent Sample (e.g. Centrifugation, RBC lysis, Lyse/fix buffer, FACS, PAXgene DNA, PAXgene RNA, Qiagen Allprep, Ficoll) title: Laboratory Procedure from_schema: https://w3id.org/include rank: 1000 alias: laboratoryProcedure owner: Biospecimen domain_of: - Biospecimen range: string biospecimenStorage: name: biospecimenStorage definition_uri: include:biospecimenStorage description: Method by which Container is stored (e.g. Minus 80 degrees Celsius, Liquid nitrogen storage) title: Biospecimen Storage from_schema: https://w3id.org/include rank: 1000 alias: biospecimenStorage owner: Biospecimen domain_of: - Biospecimen range: string sampleAvailability: name: sampleAvailability definition_uri: include:sampleAvailability description: Whether or not the sample is potentially available for sharing through the Virtual Biorepository title: Sample Availability from_schema: https://w3id.org/include rank: 1000 alias: sampleAvailability owner: Biospecimen domain_of: - Biospecimen range: enum_sampleAvailability required: true containerAvailability: name: containerAvailability definition_uri: include:containerAvailability description: Whether or not the container is potentially available for sharing through the Virtual Biorepository title: Container Availability from_schema: https://w3id.org/include rank: 1000 alias: containerAvailability owner: Biospecimen domain_of: - Biospecimen range: enum_containerAvailability","title":"Induced"},{"location":"Boolean/","text":"Type: Boolean A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Boolean"},{"location":"Boolean/#type-boolean","text":"A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool","title":"Type: Boolean"},{"location":"Boolean/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Boolean/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Condition/","text":"Class: Condition (Condition) Co-occurring conditions and other observations for the participant URI: include:Condition classDiagram class Condition Thing <|-- Condition Condition : ageAtConditionMeasureObservation Condition : conditionDataSource Condition --|> enum_conditionDataSource : conditionDataSource Condition : conditionInterpretation Condition --|> enum_conditionInterpretation : conditionInterpretation Condition : conditionMeasureSourceText Condition --|> None : conditionMeasureSourceText Condition : conditionStatus Condition --|> enum_conditionStatus : conditionStatus Condition : eventId Condition --|> None : eventId Condition : eventType Condition --|> None : eventType Condition : hasParticipant Condition --|> Participant : hasParticipant Condition : hasStudy Condition --|> Study : hasStudy Condition : hpoCode Condition : hpoLabel Condition : maxoCode Condition : maxoLabel Condition : measureUnit Condition : measureValue Condition : mondoCode Condition : mondoLabel Condition : otherCode Condition : otherLabel Inheritance Thing Condition Slots Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct hasParticipant 0..1 Participant Link to a Participant direct eventId 0..1 String Identifier for event (Visit, Survey completion, Sample collection, etc direct eventType 0..1 String Type of event for which Event ID is given (Visit, Survey completion, Sample c... direct conditionMeasureSourceText 0..1 String Co-occurring Condition (phenotype or diagnosis) or Measure (observation with ... direct ageAtConditionMeasureObservation 0..1 Integer Age in days at which Condition or Measure was observed, recorded, or diagnose... direct conditionInterpretation 0..1 EnumConditionInterpretation Whether Condition was observed or not direct conditionStatus 0..1 EnumConditionStatus Whether the Condition is ongoing, has been resolved, or this is a general his... direct conditionDataSource 0..1 EnumConditionDataSource Whether Condition information was obtained by the investigator or reported by... direct hpoLabel 0..1 String Label for Condition in the Human Phenotype Ontology (HPO) direct hpoCode 0..1 String Code for Condition in the Human Phenotype Ontology (HPO) direct mondoLabel 0..1 String Label for Condition in the Mondo Disease Ontology (MONDO) direct mondoCode 0..1 String Code for Condition in the Mondo Disease Ontology (Mondo) direct maxoLabel 0..1 String Label for Condition in the Medical Action Ontology (MAXO) direct maxoCode 0..1 String Code for condition in the Medical Action Ontology (MAXO) direct otherLabel 0..1 String Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) direct otherCode 0..1 String Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) direct measureValue 0..1 Integer Numeric value of Measure direct measureUnit 0..1 String Unit that is associated with Measure Value (e direct Identifier and Mapping Information Annotations property value required False Schema Source from schema: https://w3id.org/include Mappings Mapping Type Mapped Value self include:Condition native include:Condition LinkML Source Direct name: Condition definition_uri: include:Condition annotations: required: tag: required value: 'False' description: Co-occurring conditions and other observations for the participant title: Condition from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - hasParticipant - eventId - eventType - conditionMeasureSourceText - ageAtConditionMeasureObservation - conditionInterpretation - conditionStatus - conditionDataSource - hpoLabel - hpoCode - mondoLabel - mondoCode - maxoLabel - maxoCode - otherLabel - otherCode - measureValue - measureUnit Induced name: Condition definition_uri: include:Condition annotations: required: tag: required value: 'False' description: Co-occurring conditions and other observations for the participant title: Condition from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: Condition domain_of: - Participant - Condition - Biospecimen - DataFile range: Study hasParticipant: name: hasParticipant definition_uri: include:hasParticipant description: Link to a Participant title: Has Participant from_schema: https://w3id.org/include rank: 1000 alias: hasParticipant owner: Condition domain_of: - Condition - Biospecimen - DataFile range: Participant eventId: name: eventId definition_uri: include:eventId description: Identifier for event (Visit, Survey completion, Sample collection, etc.) to which the Condition data are linked, if applicable. There may be multiple events linked to a Participant. title: Event ID from_schema: https://w3id.org/include rank: 1000 alias: eventId owner: Condition domain_of: - Condition eventType: name: eventType definition_uri: include:eventType description: Type of event for which Event ID is given (Visit, Survey completion, Sample collection, etc.) title: Event Type from_schema: https://w3id.org/include rank: 1000 alias: eventType owner: Condition domain_of: - Condition conditionMeasureSourceText: name: conditionMeasureSourceText definition_uri: include:conditionMeasureSourceText description: Co-occurring Condition (phenotype or diagnosis) or Measure (observation with numeric value), as described by data contributor. The Down Syndrome Genetic Diagnosis will be rolled into this field. title: Condition or Measure Source Text from_schema: https://w3id.org/include rank: 1000 alias: conditionMeasureSourceText owner: Condition domain_of: - Condition ageAtConditionMeasureObservation: name: ageAtConditionMeasureObservation definition_uri: include:ageAtConditionMeasureObservation description: Age in days at which Condition or Measure was observed, recorded, or diagnosed title: Age At Condition or Measure Observation from_schema: https://w3id.org/include rank: 1000 alias: ageAtConditionMeasureObservation owner: Condition domain_of: - Condition range: integer conditionInterpretation: name: conditionInterpretation definition_uri: include:conditionInterpretation description: Whether Condition was observed or not title: Condition Interpretation from_schema: https://w3id.org/include rank: 1000 alias: conditionInterpretation owner: Condition domain_of: - Condition range: enum_conditionInterpretation conditionStatus: name: conditionStatus definition_uri: include:conditionStatus description: Whether the Condition is ongoing, has been resolved, or this is a general history of the condition without known dates title: Condition Status from_schema: https://w3id.org/include rank: 1000 alias: conditionStatus owner: Condition domain_of: - Condition range: enum_conditionStatus conditionDataSource: name: conditionDataSource definition_uri: include:conditionDataSource description: Whether Condition information was obtained by the investigator or reported by participant/family member title: Condition Data Source from_schema: https://w3id.org/include rank: 1000 alias: conditionDataSource owner: Condition domain_of: - Condition range: enum_conditionDataSource hpoLabel: name: hpoLabel definition_uri: include:hpoLabel description: Label for Condition in the Human Phenotype Ontology (HPO) title: HPO Label from_schema: https://w3id.org/include rank: 1000 alias: hpoLabel owner: Condition domain_of: - Condition range: string hpoCode: name: hpoCode definition_uri: include:hpoCode description: Code for Condition in the Human Phenotype Ontology (HPO) title: HPO Code from_schema: https://w3id.org/include rank: 1000 alias: hpoCode owner: Condition domain_of: - Condition range: string mondoLabel: name: mondoLabel definition_uri: include:mondoLabel description: Label for Condition in the Mondo Disease Ontology (MONDO) title: MONDO Label from_schema: https://w3id.org/include rank: 1000 alias: mondoLabel owner: Condition domain_of: - Condition range: string mondoCode: name: mondoCode definition_uri: include:mondoCode description: Code for Condition in the Mondo Disease Ontology (Mondo) title: MONDO Code from_schema: https://w3id.org/include rank: 1000 alias: mondoCode owner: Condition domain_of: - Condition range: string maxoLabel: name: maxoLabel definition_uri: include:maxoLabel description: Label for Condition in the Medical Action Ontology (MAXO) title: MAXO Label from_schema: https://w3id.org/include rank: 1000 alias: maxoLabel owner: Condition domain_of: - Condition range: string maxoCode: name: maxoCode definition_uri: include:maxoCode description: Code for condition in the Medical Action Ontology (MAXO) title: MAXO Code from_schema: https://w3id.org/include rank: 1000 alias: maxoCode owner: Condition domain_of: - Condition range: string otherLabel: name: otherLabel definition_uri: include:otherLabel description: Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Label from_schema: https://w3id.org/include rank: 1000 alias: otherLabel owner: Condition domain_of: - Condition range: string otherCode: name: otherCode definition_uri: include:otherCode description: Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Code from_schema: https://w3id.org/include rank: 1000 alias: otherCode owner: Condition domain_of: - Condition range: string measureValue: name: measureValue definition_uri: include:measureValue description: Numeric value of Measure title: Measure Value from_schema: https://w3id.org/include rank: 1000 alias: measureValue owner: Condition domain_of: - Condition range: integer measureUnit: name: measureUnit definition_uri: include:measureUnit description: Unit that is associated with Measure Value (e.g. kg, cm, %, x10^9/L, etc.) title: Measure Unit from_schema: https://w3id.org/include rank: 1000 alias: measureUnit owner: Condition domain_of: - Condition range: string","title":"Class: Condition (Condition)"},{"location":"Condition/#class-condition-condition","text":"Co-occurring conditions and other observations for the participant URI: include:Condition classDiagram class Condition Thing <|-- Condition Condition : ageAtConditionMeasureObservation Condition : conditionDataSource Condition --|> enum_conditionDataSource : conditionDataSource Condition : conditionInterpretation Condition --|> enum_conditionInterpretation : conditionInterpretation Condition : conditionMeasureSourceText Condition --|> None : conditionMeasureSourceText Condition : conditionStatus Condition --|> enum_conditionStatus : conditionStatus Condition : eventId Condition --|> None : eventId Condition : eventType Condition --|> None : eventType Condition : hasParticipant Condition --|> Participant : hasParticipant Condition : hasStudy Condition --|> Study : hasStudy Condition : hpoCode Condition : hpoLabel Condition : maxoCode Condition : maxoLabel Condition : measureUnit Condition : measureValue Condition : mondoCode Condition : mondoLabel Condition : otherCode Condition : otherLabel","title":"Class: Condition (Condition)"},{"location":"Condition/#inheritance","text":"Thing Condition","title":"Inheritance"},{"location":"Condition/#slots","text":"Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct hasParticipant 0..1 Participant Link to a Participant direct eventId 0..1 String Identifier for event (Visit, Survey completion, Sample collection, etc direct eventType 0..1 String Type of event for which Event ID is given (Visit, Survey completion, Sample c... direct conditionMeasureSourceText 0..1 String Co-occurring Condition (phenotype or diagnosis) or Measure (observation with ... direct ageAtConditionMeasureObservation 0..1 Integer Age in days at which Condition or Measure was observed, recorded, or diagnose... direct conditionInterpretation 0..1 EnumConditionInterpretation Whether Condition was observed or not direct conditionStatus 0..1 EnumConditionStatus Whether the Condition is ongoing, has been resolved, or this is a general his... direct conditionDataSource 0..1 EnumConditionDataSource Whether Condition information was obtained by the investigator or reported by... direct hpoLabel 0..1 String Label for Condition in the Human Phenotype Ontology (HPO) direct hpoCode 0..1 String Code for Condition in the Human Phenotype Ontology (HPO) direct mondoLabel 0..1 String Label for Condition in the Mondo Disease Ontology (MONDO) direct mondoCode 0..1 String Code for Condition in the Mondo Disease Ontology (Mondo) direct maxoLabel 0..1 String Label for Condition in the Medical Action Ontology (MAXO) direct maxoCode 0..1 String Code for condition in the Medical Action Ontology (MAXO) direct otherLabel 0..1 String Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) direct otherCode 0..1 String Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) direct measureValue 0..1 Integer Numeric value of Measure direct measureUnit 0..1 String Unit that is associated with Measure Value (e direct","title":"Slots"},{"location":"Condition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Condition/#annotations","text":"property value required False","title":"Annotations"},{"location":"Condition/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Condition/#mappings","text":"Mapping Type Mapped Value self include:Condition native include:Condition","title":"Mappings"},{"location":"Condition/#linkml-source","text":"","title":"LinkML Source"},{"location":"Condition/#direct","text":"name: Condition definition_uri: include:Condition annotations: required: tag: required value: 'False' description: Co-occurring conditions and other observations for the participant title: Condition from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - hasParticipant - eventId - eventType - conditionMeasureSourceText - ageAtConditionMeasureObservation - conditionInterpretation - conditionStatus - conditionDataSource - hpoLabel - hpoCode - mondoLabel - mondoCode - maxoLabel - maxoCode - otherLabel - otherCode - measureValue - measureUnit","title":"Direct"},{"location":"Condition/#induced","text":"name: Condition definition_uri: include:Condition annotations: required: tag: required value: 'False' description: Co-occurring conditions and other observations for the participant title: Condition from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: Condition domain_of: - Participant - Condition - Biospecimen - DataFile range: Study hasParticipant: name: hasParticipant definition_uri: include:hasParticipant description: Link to a Participant title: Has Participant from_schema: https://w3id.org/include rank: 1000 alias: hasParticipant owner: Condition domain_of: - Condition - Biospecimen - DataFile range: Participant eventId: name: eventId definition_uri: include:eventId description: Identifier for event (Visit, Survey completion, Sample collection, etc.) to which the Condition data are linked, if applicable. There may be multiple events linked to a Participant. title: Event ID from_schema: https://w3id.org/include rank: 1000 alias: eventId owner: Condition domain_of: - Condition eventType: name: eventType definition_uri: include:eventType description: Type of event for which Event ID is given (Visit, Survey completion, Sample collection, etc.) title: Event Type from_schema: https://w3id.org/include rank: 1000 alias: eventType owner: Condition domain_of: - Condition conditionMeasureSourceText: name: conditionMeasureSourceText definition_uri: include:conditionMeasureSourceText description: Co-occurring Condition (phenotype or diagnosis) or Measure (observation with numeric value), as described by data contributor. The Down Syndrome Genetic Diagnosis will be rolled into this field. title: Condition or Measure Source Text from_schema: https://w3id.org/include rank: 1000 alias: conditionMeasureSourceText owner: Condition domain_of: - Condition ageAtConditionMeasureObservation: name: ageAtConditionMeasureObservation definition_uri: include:ageAtConditionMeasureObservation description: Age in days at which Condition or Measure was observed, recorded, or diagnosed title: Age At Condition or Measure Observation from_schema: https://w3id.org/include rank: 1000 alias: ageAtConditionMeasureObservation owner: Condition domain_of: - Condition range: integer conditionInterpretation: name: conditionInterpretation definition_uri: include:conditionInterpretation description: Whether Condition was observed or not title: Condition Interpretation from_schema: https://w3id.org/include rank: 1000 alias: conditionInterpretation owner: Condition domain_of: - Condition range: enum_conditionInterpretation conditionStatus: name: conditionStatus definition_uri: include:conditionStatus description: Whether the Condition is ongoing, has been resolved, or this is a general history of the condition without known dates title: Condition Status from_schema: https://w3id.org/include rank: 1000 alias: conditionStatus owner: Condition domain_of: - Condition range: enum_conditionStatus conditionDataSource: name: conditionDataSource definition_uri: include:conditionDataSource description: Whether Condition information was obtained by the investigator or reported by participant/family member title: Condition Data Source from_schema: https://w3id.org/include rank: 1000 alias: conditionDataSource owner: Condition domain_of: - Condition range: enum_conditionDataSource hpoLabel: name: hpoLabel definition_uri: include:hpoLabel description: Label for Condition in the Human Phenotype Ontology (HPO) title: HPO Label from_schema: https://w3id.org/include rank: 1000 alias: hpoLabel owner: Condition domain_of: - Condition range: string hpoCode: name: hpoCode definition_uri: include:hpoCode description: Code for Condition in the Human Phenotype Ontology (HPO) title: HPO Code from_schema: https://w3id.org/include rank: 1000 alias: hpoCode owner: Condition domain_of: - Condition range: string mondoLabel: name: mondoLabel definition_uri: include:mondoLabel description: Label for Condition in the Mondo Disease Ontology (MONDO) title: MONDO Label from_schema: https://w3id.org/include rank: 1000 alias: mondoLabel owner: Condition domain_of: - Condition range: string mondoCode: name: mondoCode definition_uri: include:mondoCode description: Code for Condition in the Mondo Disease Ontology (Mondo) title: MONDO Code from_schema: https://w3id.org/include rank: 1000 alias: mondoCode owner: Condition domain_of: - Condition range: string maxoLabel: name: maxoLabel definition_uri: include:maxoLabel description: Label for Condition in the Medical Action Ontology (MAXO) title: MAXO Label from_schema: https://w3id.org/include rank: 1000 alias: maxoLabel owner: Condition domain_of: - Condition range: string maxoCode: name: maxoCode definition_uri: include:maxoCode description: Code for condition in the Medical Action Ontology (MAXO) title: MAXO Code from_schema: https://w3id.org/include rank: 1000 alias: maxoCode owner: Condition domain_of: - Condition range: string otherLabel: name: otherLabel definition_uri: include:otherLabel description: Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Label from_schema: https://w3id.org/include rank: 1000 alias: otherLabel owner: Condition domain_of: - Condition range: string otherCode: name: otherCode definition_uri: include:otherCode description: Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Code from_schema: https://w3id.org/include rank: 1000 alias: otherCode owner: Condition domain_of: - Condition range: string measureValue: name: measureValue definition_uri: include:measureValue description: Numeric value of Measure title: Measure Value from_schema: https://w3id.org/include rank: 1000 alias: measureValue owner: Condition domain_of: - Condition range: integer measureUnit: name: measureUnit definition_uri: include:measureUnit description: Unit that is associated with Measure Value (e.g. kg, cm, %, x10^9/L, etc.) title: Measure Unit from_schema: https://w3id.org/include rank: 1000 alias: measureUnit owner: Condition domain_of: - Condition range: string","title":"Induced"},{"location":"Curie/","text":"Type: Curie a compact URI URI: xsd:string base : Curie uri : xsd:string repr : str Comments in RDF serializations this MUST be expanded to a URI in non-RDF serializations MAY be serialized as the compact representation Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Curie"},{"location":"Curie/#type-curie","text":"a compact URI URI: xsd:string base : Curie uri : xsd:string repr : str","title":"Type: Curie"},{"location":"Curie/#comments","text":"in RDF serializations this MUST be expanded to a URI in non-RDF serializations MAY be serialized as the compact representation","title":"Comments"},{"location":"Curie/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Curie/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"DataFile/","text":"Class: Data File (DataFile) A DataFile Associated with a Participant or Study or Biospecimen URI: include:DataFile classDiagram class DataFile Thing <|-- DataFile DataFile : accessUrl DataFile : dataAccess DataFile --|> enum_dataAccess : dataAccess DataFile : dataCategory DataFile : dataType DataFile : experimentalPlatform DataFile : experimentalStrategy DataFile : fileExternalId DataFile : fileFormat DataFile : fileGlobalId DataFile : fileHash DataFile : fileName DataFile : fileSize DataFile : fileSizeUnit DataFile : hasBiospecimen DataFile --|> Biospecimen : hasBiospecimen DataFile : hasParticipant DataFile --|> Participant : hasParticipant DataFile : hasStudy DataFile --|> Study : hasStudy DataFile : publicationDoi Inheritance Thing DataFile Slots Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct hasParticipant 0..1 Participant Link to a Participant direct hasBiospecimen 0..1 Biospecimen Link to a Biospecimen direct fileGlobalId 1..1 String INCLUDE global file identifier, assigned by DCC direct fileExternalId 1..1 String Unique identifier for data file, assigned by data contributor direct fileName 1..1 String Name of file, assigned by data contributor direct fileHash 0..1 String md5 hash of this file for validation (if known) direct dataAccess 0..1 EnumDataAccess Type of access control on this file, determined by DCC direct dataCategory 1..1 String General category of data in file (e direct dataType 0..1 String Specific type of data contained in file (e direct experimentalStrategy 0..1 String Experimental method used to obtain data in file (e direct experimentalPlatform 0..1 String Specific platform used to perform experiment (e direct fileFormat 1..1 String Format of file (e direct fileSize 0..1 Integer Size of file, if known (mainly important if large) direct fileSizeUnit 0..1 String Unit of file size direct accessUrl 0..1 Uriorcurie URL/URI to file repository location direct publicationDoi 0..1 String DOI of publication associated with this file, if published direct Identifier and Mapping Information Annotations property value required True Schema Source from schema: https://w3id.org/include Mappings Mapping Type Mapped Value self include:DataFile native include:DataFile LinkML Source Direct name: DataFile definition_uri: include:DataFile annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,Participant,Biospecimen description: A DataFile Associated with a Participant or Study or Biospecimen title: Data File from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - hasParticipant - hasBiospecimen - fileGlobalId - fileExternalId - fileName - fileHash - dataAccess - dataCategory - dataType - experimentalStrategy - experimentalPlatform - fileFormat - fileSize - fileSizeUnit - accessUrl - publicationDoi Induced name: DataFile definition_uri: include:DataFile annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,Participant,Biospecimen description: A DataFile Associated with a Participant or Study or Biospecimen title: Data File from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: DataFile domain_of: - Participant - Condition - Biospecimen - DataFile range: Study hasParticipant: name: hasParticipant definition_uri: include:hasParticipant description: Link to a Participant title: Has Participant from_schema: https://w3id.org/include rank: 1000 alias: hasParticipant owner: DataFile domain_of: - 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unknown NCIT:C17998","title":"Permissible Values"},{"location":"EnumEthnicity/#slots","text":"Name Description ethnicity Ethnicity of Participant","title":"Slots"},{"location":"EnumEthnicity/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumEthnicity/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"EnumEthnicity/#linkml-source","text":"name: enum_ethnicity definition_uri: include:enum_ethnicity from_schema: https://w3id.org/include rank: 1000 permissible_values: hispanic_or_latino: text: hispanic_or_latino meaning: NCIT:C17459 title: Hispanic or Latino not_hispanic_or_latino: text: not_hispanic_or_latino meaning: NCIT:C41222 title: Not Hispanic or Latino prefer_not_to_answer: text: prefer_not_to_answer meaning: NCIT:C132222 title: Prefer not to answer unknown: text: unknown meaning: NCIT:C17998 title: Unknown","title":"LinkML 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other_relative meaning: NCIT:C21480 title: Other relative unrelated_control: text: unrelated_control meaning: NCIT:C25328 title: Unrelated control","title":"Enum: EnumFamilyRelationship"},{"location":"EnumFamilyRelationship/#enum-enumfamilyrelationship","text":"URI: EnumFamilyRelationship","title":"Enum: EnumFamilyRelationship"},{"location":"EnumFamilyRelationship/#permissible-values","text":"Value Meaning Description proband NCIT:C64435 The first affected family member to join the study father NCIT:C25174 mother NCIT:C25189 sibling NCIT:C25204 other_relative NCIT:C21480 unrelated_control NCIT:C25328","title":"Permissible Values"},{"location":"EnumFamilyRelationship/#slots","text":"Name Description familyRelationship Relationship of Participant to proband","title":"Slots"},{"location":"EnumFamilyRelationship/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumFamilyRelationship/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"EnumFamilyRelationship/#linkml-source","text":"name: enum_familyRelationship definition_uri: include:enum_familyRelationship from_schema: https://w3id.org/include rank: 1000 permissible_values: proband: text: proband description: The first affected family member to join the study meaning: NCIT:C64435 title: Proband father: text: father meaning: NCIT:C25174 title: Father mother: text: mother meaning: NCIT:C25189 title: Mother sibling: text: sibling meaning: NCIT:C25204 title: Sibling other_relative: text: other_relative meaning: NCIT:C21480 title: Other relative unrelated_control: text: unrelated_control meaning: NCIT:C25328 title: Unrelated control","title":"LinkML Source"},{"location":"EnumFamilyType/","text":"Enum: EnumFamilyType URI: EnumFamilyType Permissible Values Value Meaning Description control_only None Unrelated control, no Down syndrome family members duo None Proband + one parent other None Other family structure, e proband_only None Proband only, no family members participating in study trio None Proband + two parents trio_plus None Proband + two parents + other relatives Slots Name Description familyType Structure of family members participating in the study Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: enum_familyType definition_uri: include:enum_familyType from_schema: https://w3id.org/include rank: 1000 permissible_values: control_only: text: control_only description: Unrelated control, no Down syndrome family members title: Control-only duo: text: duo description: Proband + one parent title: Duo other: text: other description: Other family structure, e.g. one parent + twins title: Other proband_only: text: proband_only description: Proband only, no family members participating in study title: Proband-only trio: text: trio description: Proband + two parents title: Trio trio_plus: text: trio_plus description: Proband + two parents + other relatives title: Trio+","title":"Enum: EnumFamilyType"},{"location":"EnumFamilyType/#enum-enumfamilytype","text":"URI: EnumFamilyType","title":"Enum: EnumFamilyType"},{"location":"EnumFamilyType/#permissible-values","text":"Value Meaning Description control_only None Unrelated control, no Down syndrome family members duo None Proband + one parent other None Other family structure, e proband_only None Proband only, no family members participating in study trio None Proband + two parents trio_plus None Proband + two parents + other relatives","title":"Permissible Values"},{"location":"EnumFamilyType/#slots","text":"Name Description familyType Structure of family members participating in the study","title":"Slots"},{"location":"EnumFamilyType/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumFamilyType/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema 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description: UK only; do not use for US data meaning: NCIT:C126531 title: Latin American middle_eastern_or_north_african: text: middle_eastern_or_north_african description: UK only; do not use for US data meaning: NCIT:C43866 title: Middle Eastern or North African south_asian: text: south_asian description: UK only; do not use for US data meaning: NCIT:C41263 title: South Asian","title":"Enum: EnumRace"},{"location":"EnumRace/#enum-enumrace","text":"URI: EnumRace","title":"Enum: EnumRace"},{"location":"EnumRace/#permissible-values","text":"Value Meaning Description american_indian_or_alaskan_native NCIT:C41259 asian NCIT:C41260 black_or_african_american NCIT:C16352 more_than_one_race NCIT:C67109 native_hawaiian_or_other_pacific_islander NCIT:C41219 other NCIT:C17649 white NCIT:C41261 prefer_not_to_answer NCIT:C132222 unknown NCIT:C17998 east_asian NCIT:C161419 UK only; do not use for US data latin_american NCIT:C126531 UK only; do not use for US data middle_eastern_or_north_african NCIT:C43866 UK only; do not use for US data south_asian NCIT:C41263 UK only; do not use for US data","title":"Permissible Values"},{"location":"EnumRace/#slots","text":"Name Description race Race of Participant","title":"Slots"},{"location":"EnumRace/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumRace/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"EnumRace/#linkml-source","text":"name: enum_race definition_uri: include:enum_race from_schema: https://w3id.org/include rank: 1000 permissible_values: american_indian_or_alaskan_native: text: american_indian_or_alaskan_native meaning: NCIT:C41259 title: American Indian or Alaska Native asian: text: asian meaning: NCIT:C41260 title: Asian black_or_african_american: text: black_or_african_american meaning: NCIT:C16352 title: Black or African American more_than_one_race: text: more_than_one_race meaning: NCIT:C67109 title: More than one race native_hawaiian_or_other_pacific_islander: text: native_hawaiian_or_other_pacific_islander meaning: NCIT:C41219 title: Native Hawaiian or Other Pacific Islander other: text: other meaning: NCIT:C17649 title: Other white: text: white meaning: NCIT:C41261 title: White prefer_not_to_answer: text: prefer_not_to_answer meaning: NCIT:C132222 title: Prefer not to answer unknown: text: unknown meaning: NCIT:C17998 title: Unknown east_asian: text: east_asian description: UK only; do not use for US data meaning: NCIT:C161419 title: East Asian latin_american: text: latin_american description: UK only; do not use for US data meaning: NCIT:C126531 title: Latin American middle_eastern_or_north_african: text: middle_eastern_or_north_african description: UK only; do not use for US data meaning: NCIT:C43866 title: Middle Eastern or North African south_asian: text: south_asian description: UK only; do not use for US data meaning: NCIT:C41263 title: South Asian","title":"LinkML Source"},{"location":"EnumSampleAvailability/","text":"Enum: EnumSampleAvailability URI: EnumSampleAvailability Permissible Values Value Meaning Description available None Sample (any Container) is potentially available to be requested through the V... unavailable None Sample either was available through Virtual Biorepository but has been used u... Slots Name Description sampleAvailability Whether or not the sample is potentially available for sharing through the Vi... 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through the V... unavailable None Sample either was available through Virtual Biorepository but has been used u...","title":"Permissible Values"},{"location":"EnumSampleAvailability/#slots","text":"Name Description sampleAvailability Whether or not the sample is potentially available for sharing through the Vi...","title":"Slots"},{"location":"EnumSampleAvailability/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumSampleAvailability/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"EnumSampleAvailability/#linkml-source","text":"name: enum_sampleAvailability definition_uri: include:enum_sampleAvailability from_schema: https://w3id.org/include rank: 1000 permissible_values: available: text: available description: Sample (any Container) is potentially available to be requested through the Virtual Biorepository (see VBR contact info in Study page) title: Available unavailable: text: unavailable description: Sample either was available through Virtual Biorepository but has been used up, or is part of a study that is not participating in the VBR title: Unavailable","title":"LinkML Source"},{"location":"EnumSex/","text":"Enum: EnumSex URI: EnumSex Permissible Values Value Meaning Description female NCIT:C16576 male NCIT:C20197 other NCIT:C17649 unknown NCIT:C17998 Slots Name Description sex Sex of Participant Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: enum_sex definition_uri: include:enum_sex from_schema: https://w3id.org/include rank: 1000 permissible_values: female: text: female meaning: NCIT:C16576 title: Female male: text: male meaning: NCIT:C20197 title: Male other: text: other meaning: NCIT:C17649 title: Other unknown: text: unknown meaning: NCIT:C17998 title: Unknown","title":"Enum: EnumSex"},{"location":"EnumSex/#enum-enumsex","text":"URI: EnumSex","title":"Enum: 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Permissible Values Value Meaning Description abcds None ads None aecom_ds None brainpower None bri_dsr None charge_ds None ds_brain None ds_cog_all None ds_cog_aml None ds_determined None ds_hsat None ds_isp None ds_nexus None ds_pals None ds_pcgc None ds_sleep None ds360_chd None dsc None ecods None exceeds None htp None team_ds None trc_ds None x01_desmith None x01_hakonarson None Slots Name Description studyCode Unique identifer for the study, assigned by DCC Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: enum_studyCode definition_uri: include:enum_studyCode from_schema: https://w3id.org/include rank: 1000 permissible_values: abcds: text: abcds title: ABC-DS ads: text: ads title: ADS aecom_ds: text: aecom_ds title: AECOM-DS brainpower: text: brainpower title: BrainPower bri_dsr: text: bri_dsr title: BRI-DSR charge_ds: text: charge_ds title: CHARGE-DS ds_brain: text: ds_brain title: DS-Brain ds_cog_all: text: ds_cog_all title: DS-COG-ALL ds_cog_aml: text: ds_cog_aml title: DS-COG-AML ds_determined: text: ds_determined title: DS-DETERMINED ds_hsat: text: ds_hsat title: DS-HSAT ds_isp: text: ds_isp title: DS-ISP ds_nexus: text: ds_nexus title: DS-Nexus ds_pals: text: ds_pals title: DS-PALS ds_pcgc: text: ds_pcgc title: DS-PCGC ds_sleep: text: ds_sleep title: DS-Sleep ds360_chd: text: ds360_chd title: DS360-CHD dsc: text: dsc title: DSC ecods: text: ecods title: ECODS exceeds: text: exceeds title: ExCEEDS htp: text: htp title: HTP team_ds: text: team_ds title: TEAM-DS trc_ds: text: trc_ds title: TRC-DS x01_desmith: text: x01_desmith title: X01-deSmith x01_hakonarson: text: x01_hakonarson title: X01-Hakonarson","title":"Enum: EnumStudyCode"},{"location":"EnumStudyCode/#enum-enumstudycode","text":"URI: EnumStudyCode","title":"Enum: EnumStudyCode"},{"location":"EnumStudyCode/#permissible-values","text":"Value Meaning Description abcds None ads None aecom_ds None brainpower None bri_dsr None charge_ds None ds_brain None ds_cog_all None ds_cog_aml None ds_determined None ds_hsat None ds_isp None ds_nexus None ds_pals None ds_pcgc None ds_sleep None ds360_chd None dsc None ecods None exceeds None htp None team_ds None trc_ds None x01_desmith None x01_hakonarson None","title":"Permissible Values"},{"location":"EnumStudyCode/#slots","text":"Name Description studyCode Unique identifer for the study, assigned by DCC","title":"Slots"},{"location":"EnumStudyCode/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumStudyCode/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"EnumStudyCode/#linkml-source","text":"name: enum_studyCode definition_uri: include:enum_studyCode from_schema: https://w3id.org/include rank: 1000 permissible_values: abcds: text: abcds title: ABC-DS ads: text: ads title: ADS aecom_ds: text: aecom_ds title: AECOM-DS brainpower: text: brainpower title: BrainPower bri_dsr: text: bri_dsr title: BRI-DSR charge_ds: text: charge_ds title: CHARGE-DS ds_brain: text: ds_brain title: DS-Brain ds_cog_all: text: ds_cog_all title: DS-COG-ALL ds_cog_aml: text: ds_cog_aml title: DS-COG-AML ds_determined: text: ds_determined title: DS-DETERMINED ds_hsat: text: ds_hsat title: DS-HSAT ds_isp: text: ds_isp title: DS-ISP ds_nexus: text: ds_nexus title: DS-Nexus ds_pals: text: ds_pals title: DS-PALS ds_pcgc: text: ds_pcgc title: DS-PCGC ds_sleep: text: ds_sleep title: DS-Sleep ds360_chd: text: ds360_chd title: DS360-CHD dsc: text: dsc title: DSC ecods: text: ecods title: ECODS exceeds: text: exceeds title: ExCEEDS htp: text: htp title: HTP team_ds: text: team_ds title: TEAM-DS trc_ds: text: trc_ds title: TRC-DS x01_desmith: text: x01_desmith title: X01-deSmith x01_hakonarson: text: x01_hakonarson title: X01-Hakonarson","title":"LinkML Source"},{"location":"EnumVitalStatus/","text":"Enum: EnumVitalStatus URI: EnumVitalStatus Permissible Values Value Meaning Description dead 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outcomesVitalStatus Whether participant is alive or dead","title":"Slots"},{"location":"EnumVitalStatus/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumVitalStatus/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"EnumVitalStatus/#linkml-source","text":"name: enum_vital_status definition_uri: include:vital_status from_schema: https://w3id.org/include rank: 1000 permissible_values: dead: text: dead meaning: NCIT:C28554 title: Dead alive: text: alive meaning: NCIT:C37987 title: Alive unknown_or_not_available: text: unknown_or_not_available meaning: NCIT:C17998 title: Unknown or not available","title":"LinkML Source"},{"location":"Float/","text":"Type: Float A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Float"},{"location":"Float/#type-float","text":"A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float","title":"Type: Float"},{"location":"Float/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Float/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Integer/","text":"Type: Integer An integer URI: xsd:integer base : int uri : xsd:integer Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Integer"},{"location":"Integer/#type-integer","text":"An integer URI: xsd:integer base : int uri : xsd:integer","title":"Type: Integer"},{"location":"Integer/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Integer/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Jsonpath/","text":"Type: Jsonpath A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Jsonpath"},{"location":"Jsonpath/#type-jsonpath","text":"A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Jsonpath"},{"location":"Jsonpath/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Jsonpath/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Jsonpointer/","text":"Type: Jsonpointer A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Jsonpointer"},{"location":"Jsonpointer/#type-jsonpointer","text":"A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Jsonpointer"},{"location":"Jsonpointer/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Jsonpointer/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Ncname/","text":"Type: Ncname Prefix part of CURIE URI: xsd:string base : NCName uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Ncname"},{"location":"Ncname/#type-ncname","text":"Prefix part of CURIE URI: xsd:string base : NCName uri : xsd:string repr : str","title":"Type: Ncname"},{"location":"Ncname/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Ncname/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Nodeidentifier/","text":"Type: Nodeidentifier A URI, CURIE or BNODE that represents a node in a model. URI: shex:nonLiteral base : NodeIdentifier uri : shex:nonLiteral repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Nodeidentifier"},{"location":"Nodeidentifier/#type-nodeidentifier","text":"A URI, CURIE or BNODE that represents a node in a model. URI: shex:nonLiteral base : NodeIdentifier uri : shex:nonLiteral repr : str","title":"Type: Nodeidentifier"},{"location":"Nodeidentifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Nodeidentifier/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Objectidentifier/","text":"Type: Objectidentifier A URI or CURIE that represents an object in the model. URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str Comments Used for inheritance and type checking Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#type-objectidentifier","text":"A URI or CURIE that represents an object in the model. URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#comments","text":"Used for inheritance and type checking","title":"Comments"},{"location":"Objectidentifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Objectidentifier/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Participant/","text":"Class: Participant (Participant) Demographic and clinical information about the participant URI: include:Participant classDiagram class Participant Thing <|-- Participant Participant : ageAtFirstPatientEngagement Participant : ageAtLastVitalStatus Participant : downSyndromeStatus Participant --|> enum_downSyndromeStatus : downSyndromeStatus Participant : ethnicity Participant --|> enum_ethnicity : ethnicity Participant : familyId Participant : familyRelationship Participant --|> enum_familyRelationship : familyRelationship Participant : familyType Participant --|> enum_familyType : familyType Participant : fatherId Participant : firstPatientEngagementEvent Participant --|> None : firstPatientEngagementEvent Participant : hasStudy Participant --|> Study : hasStudy Participant : motherId Participant : otherFamilyMemberId Participant : outcomesVitalStatus Participant --|> enum_vital_status : outcomesVitalStatus Participant : participantExternalId Participant : participantGlobalId Participant : race Participant --|> enum_race : race Participant : sex Participant --|> enum_sex : sex Participant : siblingId Inheritance Thing Participant Slots Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct participantGlobalId 1..1 String Unique INCLUDE global identifier for the participant, assigned by DCC direct participantExternalId 1..1 String Unique, de-identified identifier for the participant, assigned by data contri... direct familyId 0..1 String Unique identifer for family to which Participant belongs, assigned by data co... direct familyType 1..1 EnumFamilyType Structure of family members participating in the study direct fatherId 0..1 String Participant External ID for Participant's father (NA if Participant is not th... direct motherId 0..1 String Participant External ID for Participant's mother (NA if Participant is not th... direct siblingId 0..1 String Participant External ID for Participant's sibling(s) (NA if Participant is no... direct otherFamilyMemberId 0..1 String Participant External ID for Participant's other family members (NA if Partici... direct familyRelationship 1..1 EnumFamilyRelationship Relationship of Participant to proband direct sex 1..1 EnumSex Sex of Participant direct race 1..1 EnumRace Race of Participant direct ethnicity 1..1 EnumEthnicity Ethnicity of Participant direct downSyndromeStatus 1..1 EnumDownSyndromeStatus Down Syndrome status of participant direct ageAtFirstPatientEngagement 1..1 Integer Age in days of Participant at first recorded study event (enrollment, visit, ... direct firstPatientEngagementEvent 1..1 String Event for which Age at First Patient Engagement is given (e direct outcomesVitalStatus 0..1 EnumVitalStatus Whether participant is alive or dead direct ageAtLastVitalStatus 0..1 Integer Age in days when participant's vital status was last recorded direct Usages used by used in type used Condition hasParticipant range Participant Biospecimen hasParticipant range Participant DataFile hasParticipant range Participant Identifier and Mapping Information Annotations property value required True Schema Source from schema: https://w3id.org/include Mappings Mapping Type Mapped Value self include:Participant native include:Participant LinkML Source Direct name: Participant definition_uri: include:Participant annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,DataFile description: Demographic and clinical information about the participant title: Participant from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - participantGlobalId - participantExternalId - familyId - familyType - fatherId - motherId - siblingId - otherFamilyMemberId - familyRelationship - sex - race - ethnicity - downSyndromeStatus - ageAtFirstPatientEngagement - firstPatientEngagementEvent - outcomesVitalStatus - ageAtLastVitalStatus Induced name: Participant definition_uri: include:Participant annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,DataFile description: Demographic and clinical information about the participant title: Participant from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: Participant domain_of: - Participant - Condition - Biospecimen - DataFile range: Study participantGlobalId: name: participantGlobalId definition_uri: include:participantGlobalId description: Unique INCLUDE global identifier for the participant, assigned by DCC title: Participant Global ID from_schema: https://w3id.org/include rank: 1000 alias: participantGlobalId owner: Participant domain_of: - Participant range: string required: true participantExternalId: name: participantExternalId definition_uri: include:participantExternalId description: Unique, de-identified identifier for the participant, assigned by data contributor. External IDs must be two steps removed from personal information in the study records. title: Participant External ID from_schema: https://w3id.org/include rank: 1000 alias: participantExternalId owner: Participant domain_of: - Participant range: string required: true familyId: name: familyId definition_uri: include:familyId description: Unique identifer for family to which Participant belongs, assigned by data contributor title: Family ID from_schema: https://w3id.org/include rank: 1000 alias: familyId owner: Participant domain_of: - Participant range: string familyType: name: familyType definition_uri: include:familyType description: Structure of family members participating in the study title: Family Type from_schema: https://w3id.org/include rank: 1000 alias: familyType owner: Participant domain_of: - Participant range: enum_familyType required: true fatherId: name: fatherId definition_uri: include:fatherId description: Participant External ID for Participant's father (NA if Participant is not the proband) title: Father ID from_schema: https://w3id.org/include rank: 1000 alias: fatherId owner: Participant domain_of: - Participant range: string motherId: name: motherId definition_uri: include:motherId description: Participant External ID for Participant's mother (NA if Participant is not the proband) title: Mother ID from_schema: https://w3id.org/include rank: 1000 alias: motherId owner: Participant domain_of: - Participant range: string siblingId: name: siblingId definition_uri: include:siblingId description: Participant External ID for Participant's sibling(s) (NA if Participant is not the proband) title: Sibling ID from_schema: https://w3id.org/include rank: 1000 alias: siblingId owner: Participant domain_of: - Participant range: string otherFamilyMemberId: name: otherFamilyMemberId definition_uri: include:otherFamilyMemberId description: Participant External ID for Participant's other family members (NA if Participant is not the proband) title: Other Family Member ID from_schema: https://w3id.org/include rank: 1000 alias: otherFamilyMemberId owner: Participant domain_of: - Participant range: string familyRelationship: name: familyRelationship definition_uri: include:familyRelationship description: Relationship of Participant to proband title: Family Relationship from_schema: https://w3id.org/include rank: 1000 alias: familyRelationship owner: Participant domain_of: - Participant range: enum_familyRelationship required: true sex: name: sex definition_uri: include:sex description: Sex of Participant title: Sex from_schema: https://w3id.org/include rank: 1000 alias: sex owner: Participant domain_of: - Participant range: enum_sex required: true race: name: race definition_uri: include:race description: Race of Participant title: Race from_schema: https://w3id.org/include rank: 1000 alias: race owner: Participant domain_of: - Participant range: enum_race required: true ethnicity: name: ethnicity definition_uri: include:ethnicity description: Ethnicity of Participant title: Ethnicity from_schema: https://w3id.org/include rank: 1000 alias: ethnicity owner: Participant domain_of: - Participant range: enum_ethnicity required: true downSyndromeStatus: name: downSyndromeStatus definition_uri: include:downSyndromeStatus description: Down Syndrome status of participant title: Down Syndrome Status from_schema: https://w3id.org/include rank: 1000 alias: downSyndromeStatus owner: Participant domain_of: - Participant range: enum_downSyndromeStatus required: true ageAtFirstPatientEngagement: name: ageAtFirstPatientEngagement definition_uri: include:ageAtFirstPatientEngagement description: Age in days of Participant at first recorded study event (enrollment, visit, observation, sample collection, survey completion, etc.). Age at enrollment is preferred, if available. title: Age at First Patient Engagement from_schema: https://w3id.org/include rank: 1000 alias: ageAtFirstPatientEngagement owner: Participant domain_of: - Participant range: integer required: true firstPatientEngagementEvent: name: firstPatientEngagementEvent definition_uri: include:firstPatientEngagementEvent description: Event for which Age at First Patient Engagement is given (e.g. enrollment, visit, observation, sample collection, survey completion, etc.). Age at enrollment is preferred, if available. title: First Patient Engagement Event from_schema: https://w3id.org/include rank: 1000 alias: firstPatientEngagementEvent owner: Participant domain_of: - Participant required: true outcomesVitalStatus: name: outcomesVitalStatus definition_uri: include:outcomesVitalStatus description: Whether participant is alive or dead title: Outcomes Vital Status from_schema: https://w3id.org/include rank: 1000 alias: outcomesVitalStatus owner: Participant domain_of: - Participant range: enum_vital_status ageAtLastVitalStatus: name: ageAtLastVitalStatus definition_uri: include:ageAtLastVitalStatus description: Age in days when participant's vital status was last recorded title: Age at Last Vital Status from_schema: https://w3id.org/include rank: 1000 alias: ageAtLastVitalStatus owner: Participant domain_of: - Participant range: integer","title":"Class: Participant (Participant)"},{"location":"Participant/#class-participant-participant","text":"Demographic and clinical information about the participant URI: include:Participant classDiagram class Participant Thing <|-- Participant Participant : ageAtFirstPatientEngagement Participant : ageAtLastVitalStatus Participant : downSyndromeStatus Participant --|> enum_downSyndromeStatus : downSyndromeStatus Participant : ethnicity Participant --|> enum_ethnicity : ethnicity Participant : familyId Participant : familyRelationship Participant --|> enum_familyRelationship : familyRelationship Participant : familyType Participant --|> enum_familyType : familyType Participant : fatherId Participant : firstPatientEngagementEvent Participant --|> None : firstPatientEngagementEvent Participant : hasStudy Participant --|> Study : hasStudy Participant : motherId Participant : otherFamilyMemberId Participant : outcomesVitalStatus Participant --|> enum_vital_status : outcomesVitalStatus Participant : participantExternalId Participant : participantGlobalId Participant : race Participant --|> enum_race : race Participant : sex Participant --|> enum_sex : sex Participant : siblingId","title":"Class: Participant (Participant)"},{"location":"Participant/#inheritance","text":"Thing Participant","title":"Inheritance"},{"location":"Participant/#slots","text":"Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct participantGlobalId 1..1 String Unique INCLUDE global identifier for the participant, assigned by DCC direct participantExternalId 1..1 String Unique, de-identified identifier for the participant, assigned by data contri... direct familyId 0..1 String Unique identifer for family to which Participant belongs, assigned by data co... direct familyType 1..1 EnumFamilyType Structure of family members participating in the study direct fatherId 0..1 String Participant External ID for Participant's father (NA if Participant is not th... direct motherId 0..1 String Participant External ID for Participant's mother (NA if Participant is not th... direct siblingId 0..1 String Participant External ID for Participant's sibling(s) (NA if Participant is no... direct otherFamilyMemberId 0..1 String Participant External ID for Participant's other family members (NA if Partici... direct familyRelationship 1..1 EnumFamilyRelationship Relationship of Participant to proband direct sex 1..1 EnumSex Sex of Participant direct race 1..1 EnumRace Race of Participant direct ethnicity 1..1 EnumEthnicity Ethnicity of Participant direct downSyndromeStatus 1..1 EnumDownSyndromeStatus Down Syndrome status of participant direct ageAtFirstPatientEngagement 1..1 Integer Age in days of Participant at first recorded study event (enrollment, visit, ... direct firstPatientEngagementEvent 1..1 String Event for which Age at First Patient Engagement is given (e direct outcomesVitalStatus 0..1 EnumVitalStatus Whether participant is alive or dead direct ageAtLastVitalStatus 0..1 Integer Age in days when participant's vital status was last recorded direct","title":"Slots"},{"location":"Participant/#usages","text":"used by used in type used Condition hasParticipant range Participant Biospecimen hasParticipant range Participant DataFile hasParticipant range Participant","title":"Usages"},{"location":"Participant/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Participant/#annotations","text":"property value required True","title":"Annotations"},{"location":"Participant/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Participant/#mappings","text":"Mapping Type Mapped Value self include:Participant native include:Participant","title":"Mappings"},{"location":"Participant/#linkml-source","text":"","title":"LinkML Source"},{"location":"Participant/#direct","text":"name: Participant definition_uri: include:Participant annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,DataFile description: Demographic and clinical information about the participant title: Participant from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - participantGlobalId - participantExternalId - familyId - familyType - fatherId - motherId - siblingId - otherFamilyMemberId - familyRelationship - sex - race - ethnicity - downSyndromeStatus - ageAtFirstPatientEngagement - firstPatientEngagementEvent - outcomesVitalStatus - ageAtLastVitalStatus","title":"Direct"},{"location":"Participant/#induced","text":"name: Participant definition_uri: include:Participant annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,DataFile description: Demographic and clinical information about the participant title: Participant from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: Participant domain_of: - Participant - Condition - Biospecimen - DataFile range: Study participantGlobalId: name: participantGlobalId definition_uri: include:participantGlobalId description: Unique INCLUDE global identifier for the participant, assigned by DCC title: Participant Global ID from_schema: https://w3id.org/include rank: 1000 alias: participantGlobalId owner: Participant domain_of: - Participant range: string required: true participantExternalId: name: participantExternalId definition_uri: include:participantExternalId description: Unique, de-identified identifier for the participant, assigned by data contributor. External IDs must be two steps removed from personal information in the study records. title: Participant External ID from_schema: https://w3id.org/include rank: 1000 alias: participantExternalId owner: Participant domain_of: - Participant range: string required: true familyId: name: familyId definition_uri: include:familyId description: Unique identifer for family to which Participant belongs, assigned by data contributor title: Family ID from_schema: https://w3id.org/include rank: 1000 alias: familyId owner: Participant domain_of: - Participant range: string familyType: name: familyType definition_uri: include:familyType description: Structure of family members participating in the study title: Family Type from_schema: https://w3id.org/include rank: 1000 alias: familyType owner: Participant domain_of: - Participant range: enum_familyType required: true fatherId: name: fatherId definition_uri: include:fatherId description: Participant External ID for Participant's father (NA if Participant is not the proband) title: Father ID from_schema: https://w3id.org/include rank: 1000 alias: fatherId owner: Participant domain_of: - Participant range: string motherId: name: motherId definition_uri: include:motherId description: Participant External ID for Participant's mother (NA if Participant is not the proband) title: Mother ID from_schema: https://w3id.org/include rank: 1000 alias: motherId owner: Participant domain_of: - Participant range: string siblingId: name: siblingId definition_uri: include:siblingId description: Participant External ID for Participant's sibling(s) (NA if Participant is not the proband) title: Sibling ID from_schema: https://w3id.org/include rank: 1000 alias: siblingId owner: Participant domain_of: - Participant range: string otherFamilyMemberId: name: otherFamilyMemberId definition_uri: include:otherFamilyMemberId description: Participant External ID for Participant's other family members (NA if Participant is not the proband) title: Other Family Member ID from_schema: https://w3id.org/include rank: 1000 alias: otherFamilyMemberId owner: Participant domain_of: - Participant range: string familyRelationship: name: familyRelationship definition_uri: include:familyRelationship description: Relationship of Participant to proband title: Family Relationship from_schema: https://w3id.org/include rank: 1000 alias: familyRelationship owner: Participant domain_of: - Participant range: enum_familyRelationship required: true sex: name: sex definition_uri: include:sex description: Sex of Participant title: Sex from_schema: https://w3id.org/include rank: 1000 alias: sex owner: Participant domain_of: - Participant range: enum_sex required: true race: name: race definition_uri: include:race description: Race of Participant title: Race from_schema: https://w3id.org/include rank: 1000 alias: race owner: Participant domain_of: - Participant range: enum_race required: true ethnicity: name: ethnicity definition_uri: include:ethnicity description: Ethnicity of Participant title: Ethnicity from_schema: https://w3id.org/include rank: 1000 alias: ethnicity owner: Participant domain_of: - Participant range: enum_ethnicity required: true downSyndromeStatus: name: downSyndromeStatus definition_uri: include:downSyndromeStatus description: Down Syndrome status of participant title: Down Syndrome Status from_schema: https://w3id.org/include rank: 1000 alias: downSyndromeStatus owner: Participant domain_of: - Participant range: enum_downSyndromeStatus required: true ageAtFirstPatientEngagement: name: ageAtFirstPatientEngagement definition_uri: include:ageAtFirstPatientEngagement description: Age in days of Participant at first recorded study event (enrollment, visit, observation, sample collection, survey completion, etc.). Age at enrollment is preferred, if available. title: Age at First Patient Engagement from_schema: https://w3id.org/include rank: 1000 alias: ageAtFirstPatientEngagement owner: Participant domain_of: - Participant range: integer required: true firstPatientEngagementEvent: name: firstPatientEngagementEvent definition_uri: include:firstPatientEngagementEvent description: Event for which Age at First Patient Engagement is given (e.g. enrollment, visit, observation, sample collection, survey completion, etc.). Age at enrollment is preferred, if available. title: First Patient Engagement Event from_schema: https://w3id.org/include rank: 1000 alias: firstPatientEngagementEvent owner: Participant domain_of: - Participant required: true outcomesVitalStatus: name: outcomesVitalStatus definition_uri: include:outcomesVitalStatus description: Whether participant is alive or dead title: Outcomes Vital Status from_schema: https://w3id.org/include rank: 1000 alias: outcomesVitalStatus owner: Participant domain_of: - Participant range: enum_vital_status ageAtLastVitalStatus: name: ageAtLastVitalStatus definition_uri: include:ageAtLastVitalStatus description: Age in days when participant's vital status was last recorded title: Age at Last Vital Status from_schema: https://w3id.org/include rank: 1000 alias: ageAtLastVitalStatus owner: Participant domain_of: - Participant range: integer","title":"Induced"},{"location":"Sparqlpath/","text":"Type: Sparqlpath A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Sparqlpath"},{"location":"Sparqlpath/#type-sparqlpath","text":"A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Sparqlpath"},{"location":"Sparqlpath/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Sparqlpath/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"String/","text":"Type: String A character string URI: xsd:string base : str uri : xsd:string Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: String"},{"location":"String/#type-string","text":"A character string URI: xsd:string base : str uri : xsd:string","title":"Type: String"},{"location":"String/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"String/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Study/","text":"Class: Study (Study) General information about the study URI: include:Study classDiagram class Study Thing <|-- Study Study : dbgap Study : program Study --|> enum_program : program Study : studyCode Study --|> enum_studyCode : studyCode Study : studyName Study : vbrEmail Study : vbrReadme Study : vbrUrl Inheritance Thing Study Slots Name Cardinality and Range Description Inheritance studyCode 1..1 EnumStudyCode Unique identifer for the study, assigned by DCC direct studyName 1..1 String Full name of the study, chosen by data contributor direct program 1..1 EnumProgram Funding source for the study direct dbgap 0..1 String dbGaP study accession code direct vbrEmail 0..1 String Email address for Virtual Biorepository requests/inquiries direct vbrUrl 0..1 String Link to Virtual Biorepository request form direct vbrReadme 0..1 String Instructions for contacting or requesting samples from Virtual Biorepository direct Usages used by used in type used Participant hasStudy range Study Condition hasStudy range Study Biospecimen hasStudy range Study DataFile hasStudy range Study Identifier and Mapping Information Annotations property value required True Schema Source from schema: https://w3id.org/include Mappings Mapping Type Mapped Value self include:Study native include:Study LinkML Source Direct name: Study definition_uri: include:Study annotations: required: tag: required value: 'True' description: General information about the study title: Study from_schema: https://w3id.org/include is_a: Thing slots: - studyCode - studyName - program - dbgap - vbrEmail - vbrUrl - vbrReadme Induced name: Study definition_uri: include:Study annotations: required: tag: required value: 'True' description: General information about the study title: Study from_schema: https://w3id.org/include is_a: Thing attributes: studyCode: name: studyCode definition_uri: include:studyCode description: Unique identifer for the study, assigned by DCC title: Study Code from_schema: https://w3id.org/include rank: 1000 alias: studyCode owner: Study domain_of: - Study range: enum_studyCode required: true studyName: name: studyName definition_uri: include:studyName description: Full name of the study, chosen by data contributor title: Study Name from_schema: https://w3id.org/include rank: 1000 alias: studyName owner: Study domain_of: - Study range: string required: true program: name: program definition_uri: include:program description: Funding source for the study title: Program from_schema: https://w3id.org/include rank: 1000 alias: program owner: Study domain_of: - Study range: enum_program required: true dbgap: name: dbgap definition_uri: include:dbgap description: dbGaP study accession code title: dbGaP from_schema: https://w3id.org/include rank: 1000 alias: dbgap owner: Study domain_of: - Study range: string vbrEmail: name: vbrEmail definition_uri: include:vbrEmail description: Email address for Virtual Biorepository requests/inquiries title: Virtual Biorepository Email from_schema: https://w3id.org/include rank: 1000 alias: vbrEmail owner: Study domain_of: - Study range: string vbrUrl: name: vbrUrl definition_uri: include:vbrUrl description: Link to Virtual Biorepository request form title: Virtual Biorepository URL from_schema: https://w3id.org/include rank: 1000 alias: vbrUrl owner: Study domain_of: - Study range: string vbrReadme: name: vbrReadme definition_uri: include:vbrReadme description: Instructions for contacting or requesting samples from Virtual Biorepository title: Virtual Biorepository Readme from_schema: https://w3id.org/include rank: 1000 alias: vbrReadme owner: Study domain_of: - Study range: string","title":"Class: Study (Study)"},{"location":"Study/#class-study-study","text":"General information about the study URI: include:Study classDiagram class Study Thing <|-- Study Study : dbgap Study : program Study --|> enum_program : program Study : studyCode Study --|> enum_studyCode : studyCode Study : studyName Study : vbrEmail Study : vbrReadme Study : vbrUrl","title":"Class: Study 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Condition range: enum_conditionDataSource","title":"LinkML Source"},{"location":"conditionInterpretation/","text":"Slot: Condition Interpretation (conditionInterpretation) Whether Condition was observed or not URI: include:conditionInterpretation Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: EnumConditionInterpretation Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: conditionInterpretation definition_uri: include:conditionInterpretation description: Whether Condition was observed or not title: Condition Interpretation from_schema: https://w3id.org/include rank: 1000 alias: conditionInterpretation domain_of: - Condition range: enum_conditionInterpretation","title":"Slot: Condition Interpretation (conditionInterpretation)"},{"location":"conditionInterpretation/#slot-condition-interpretation-conditioninterpretation","text":"Whether Condition was observed or not URI: include:conditionInterpretation","title":"Slot: Condition Interpretation (conditionInterpretation)"},{"location":"conditionInterpretation/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"conditionInterpretation/#properties","text":"Range: EnumConditionInterpretation","title":"Properties"},{"location":"conditionInterpretation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"conditionInterpretation/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"conditionInterpretation/#linkml-source","text":"name: conditionInterpretation definition_uri: include:conditionInterpretation description: Whether Condition was observed or not title: Condition Interpretation from_schema: https://w3id.org/include rank: 1000 alias: conditionInterpretation domain_of: - Condition range: enum_conditionInterpretation","title":"LinkML Source"},{"location":"conditionMeasureSourceText/","text":"Slot: Condition or Measure Source Text (conditionMeasureSourceText) Co-occurring Condition (phenotype or diagnosis) or Measure (observation with numeric value), as described by data contributor. The Down Syndrome Genetic Diagnosis will be rolled into this field. URI: include:conditionMeasureSourceText Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: NONE Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: conditionMeasureSourceText definition_uri: include:conditionMeasureSourceText description: Co-occurring Condition (phenotype or diagnosis) or Measure (observation with numeric value), as described by data contributor. 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The Down Syndrome Genetic Diagnosis will be rolled into this field. title: Condition or Measure Source Text from_schema: https://w3id.org/include rank: 1000 alias: conditionMeasureSourceText domain_of: - Condition","title":"LinkML Source"},{"location":"conditionStatus/","text":"Slot: Condition Status (conditionStatus) Whether the Condition is ongoing, has been resolved, or this is a general history of the condition without known dates URI: include:conditionStatus Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: EnumConditionStatus Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: conditionStatus definition_uri: include:conditionStatus description: Whether the Condition is ongoing, has been resolved, or this is a general history of the condition without known dates title: Condition Status from_schema: https://w3id.org/include rank: 1000 alias: conditionStatus domain_of: - Condition range: enum_conditionStatus","title":"Slot: Condition Status (conditionStatus)"},{"location":"conditionStatus/#slot-condition-status-conditionstatus","text":"Whether the Condition is ongoing, has been resolved, or this is a general history of the condition without known dates URI: include:conditionStatus","title":"Slot: Condition Status (conditionStatus)"},{"location":"conditionStatus/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"conditionStatus/#properties","text":"Range: EnumConditionStatus","title":"Properties"},{"location":"conditionStatus/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"conditionStatus/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"conditionStatus/#linkml-source","text":"name: conditionStatus definition_uri: include:conditionStatus description: Whether the Condition is ongoing, has been resolved, or this is a general history of the condition without known dates title: Condition Status from_schema: https://w3id.org/include rank: 1000 alias: conditionStatus domain_of: - Condition range: enum_conditionStatus","title":"LinkML Source"},{"location":"containerAvailability/","text":"Slot: Container Availability (containerAvailability) Whether or not the container is potentially available for sharing through the Virtual Biorepository URI: include:containerAvailability Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: EnumContainerAvailability Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: containerAvailability definition_uri: include:containerAvailability description: Whether or not the container is potentially available for sharing through the Virtual Biorepository title: Container Availability from_schema: https://w3id.org/include rank: 1000 alias: containerAvailability domain_of: - Biospecimen range: enum_containerAvailability","title":"Slot: Container Availability (containerAvailability)"},{"location":"containerAvailability/#slot-container-availability-containeravailability","text":"Whether or not the container is potentially available for sharing through the Virtual Biorepository URI: include:containerAvailability","title":"Slot: Container Availability (containerAvailability)"},{"location":"containerAvailability/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"containerAvailability/#properties","text":"Range: EnumContainerAvailability","title":"Properties"},{"location":"containerAvailability/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"containerAvailability/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"containerAvailability/#linkml-source","text":"name: containerAvailability definition_uri: include:containerAvailability description: Whether or not the container is potentially available for sharing through the Virtual Biorepository title: Container Availability from_schema: https://w3id.org/include rank: 1000 alias: containerAvailability domain_of: - Biospecimen range: enum_containerAvailability","title":"LinkML Source"},{"location":"containerExternalId/","text":"Slot: Container External ID (containerExternalId) Identifier for specific container/aliquot of sample, assigned by data contributor. For example, distinct aliquots of a sample will have the same Sample ID but different Container IDs. URI: include:containerExternalId Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: containerExternalId definition_uri: include:containerExternalId description: Identifier for specific container/aliquot of sample, assigned by data contributor. 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URI: include:containerExternalId","title":"Slot: Container External ID (containerExternalId)"},{"location":"containerExternalId/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"containerExternalId/#properties","text":"Range: String","title":"Properties"},{"location":"containerExternalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"containerExternalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"containerExternalId/#linkml-source","text":"name: containerExternalId definition_uri: include:containerExternalId description: Identifier for specific container/aliquot of sample, assigned by data contributor. For example, distinct aliquots of a sample will have the same Sample ID but different Container IDs. title: Container External ID from_schema: https://w3id.org/include rank: 1000 alias: containerExternalId domain_of: - Biospecimen range: string","title":"LinkML Source"},{"location":"containerGlobalId/","text":"Slot: Container Global ID (containerGlobalId) INCLUDE global identifier for specific container/aliquot of sample, assigned by DCC URI: include:containerGlobalId Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: containerGlobalId definition_uri: include:containerGlobalId description: INCLUDE global identifier for specific container/aliquot of sample, assigned by DCC title: Container Global ID from_schema: https://w3id.org/include rank: 1000 alias: containerGlobalId domain_of: - Biospecimen range: string","title":"Slot: Container Global ID (containerGlobalId)"},{"location":"containerGlobalId/#slot-container-global-id-containerglobalid","text":"INCLUDE global identifier for specific container/aliquot of sample, assigned by DCC URI: include:containerGlobalId","title":"Slot: Container Global ID (containerGlobalId)"},{"location":"containerGlobalId/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"containerGlobalId/#properties","text":"Range: String","title":"Properties"},{"location":"containerGlobalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"containerGlobalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"containerGlobalId/#linkml-source","text":"name: containerGlobalId definition_uri: include:containerGlobalId description: INCLUDE global identifier for specific container/aliquot of sample, assigned by DCC title: Container Global ID from_schema: https://w3id.org/include rank: 1000 alias: containerGlobalId domain_of: - Biospecimen range: string","title":"LinkML Source"},{"location":"dataAccess/","text":"Slot: Data Access (dataAccess) Type of access control on this file, determined by DCC URI: include:dataAccess Applicable Classes Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: EnumDataAccess Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: dataAccess definition_uri: include:dataAccess description: Type of access control on this file, determined by DCC title: Data Access from_schema: https://w3id.org/include rank: 1000 alias: dataAccess domain_of: - DataFile range: enum_dataAccess","title":"Slot: Data Access (dataAccess)"},{"location":"dataAccess/#slot-data-access-dataaccess","text":"Type of access control on this file, determined by DCC URI: include:dataAccess","title":"Slot: Data Access (dataAccess)"},{"location":"dataAccess/#applicable-classes","text":"Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"dataAccess/#properties","text":"Range: EnumDataAccess","title":"Properties"},{"location":"dataAccess/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"dataAccess/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"dataAccess/#linkml-source","text":"name: dataAccess definition_uri: include:dataAccess description: Type of access control on this file, determined by DCC title: Data Access from_schema: https://w3id.org/include rank: 1000 alias: dataAccess domain_of: - DataFile range: enum_dataAccess","title":"LinkML Source"},{"location":"dataCategory/","text":"Slot: Data Category (dataCategory) General category of data in file (e.g. Clinical, Genomics, Proteomics, Metabolomics, Immune profiling, Transcriptomics) URI: include:dataCategory Applicable Classes Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: dataCategory definition_uri: include:dataCategory description: General category of data in file (e.g. Clinical, Genomics, Proteomics, Metabolomics, Immune profiling, Transcriptomics) title: Data Category from_schema: https://w3id.org/include rank: 1000 alias: dataCategory domain_of: - DataFile range: string required: true","title":"Slot: Data Category (dataCategory)"},{"location":"dataCategory/#slot-data-category-datacategory","text":"General category of data in file (e.g. Clinical, Genomics, Proteomics, Metabolomics, Immune profiling, Transcriptomics) URI: include:dataCategory","title":"Slot: Data Category (dataCategory)"},{"location":"dataCategory/#applicable-classes","text":"Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"dataCategory/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"dataCategory/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"dataCategory/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"dataCategory/#linkml-source","text":"name: dataCategory definition_uri: include:dataCategory description: General category of data in file (e.g. Clinical, Genomics, Proteomics, Metabolomics, Immune profiling, Transcriptomics) title: Data Category from_schema: https://w3id.org/include rank: 1000 alias: dataCategory domain_of: - DataFile range: string required: true","title":"LinkML Source"},{"location":"dataType/","text":"Slot: Data Type (dataType) Specific type of data contained in file (e.g. Preprocessed metabolite relative abundance, Absolute protein concentration, Aligned reads, Simple nucleotide variations, GVCF, Gene expression quantifications, Gene fusions, Somatic copy number variations, Somatic structural variations) URI: include:dataType Applicable Classes Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: dataType definition_uri: include:dataType description: Specific type of data contained in file (e.g. Preprocessed metabolite relative abundance, Absolute protein concentration, Aligned reads, Simple nucleotide variations, GVCF, Gene expression quantifications, Gene fusions, Somatic copy number variations, Somatic structural variations) title: Data Type from_schema: https://w3id.org/include rank: 1000 alias: dataType domain_of: - DataFile range: string","title":"Slot: Data Type (dataType)"},{"location":"dataType/#slot-data-type-datatype","text":"Specific type of data contained in file (e.g. Preprocessed metabolite relative abundance, Absolute protein concentration, Aligned reads, Simple nucleotide variations, GVCF, Gene expression quantifications, Gene fusions, Somatic copy number variations, Somatic structural variations) URI: include:dataType","title":"Slot: Data Type (dataType)"},{"location":"dataType/#applicable-classes","text":"Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"dataType/#properties","text":"Range: String","title":"Properties"},{"location":"dataType/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"dataType/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"dataType/#linkml-source","text":"name: dataType definition_uri: include:dataType description: Specific type of data contained in file (e.g. Preprocessed metabolite relative abundance, Absolute protein concentration, Aligned reads, Simple nucleotide variations, GVCF, Gene expression quantifications, Gene fusions, Somatic copy number variations, Somatic structural variations) title: Data Type from_schema: https://w3id.org/include rank: 1000 alias: dataType domain_of: - DataFile range: string","title":"LinkML Source"},{"location":"dbgap/","text":"Slot: dbGaP (dbgap) dbGaP study accession code URI: include:dbgap Applicable Classes Name Description Modifies Slot Study General information about the study no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: dbgap definition_uri: include:dbgap description: dbGaP study accession code title: dbGaP from_schema: https://w3id.org/include rank: 1000 alias: dbgap domain_of: - Study range: string","title":"Slot: dbGaP (dbgap)"},{"location":"dbgap/#slot-dbgap-dbgap","text":"dbGaP study accession code URI: include:dbgap","title":"Slot: dbGaP (dbgap)"},{"location":"dbgap/#applicable-classes","text":"Name Description Modifies Slot Study General information about the study no","title":"Applicable Classes"},{"location":"dbgap/#properties","text":"Range: String","title":"Properties"},{"location":"dbgap/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"dbgap/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"dbgap/#linkml-source","text":"name: dbgap definition_uri: include:dbgap description: dbGaP study accession code title: dbGaP from_schema: https://w3id.org/include rank: 1000 alias: dbgap domain_of: - 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Participant range: enum_downSyndromeStatus required: true","title":"LinkML Source"},{"location":"ethnicity/","text":"Slot: Ethnicity (ethnicity) Ethnicity of Participant URI: include:ethnicity Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: EnumEthnicity Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: ethnicity definition_uri: include:ethnicity description: Ethnicity of Participant title: Ethnicity from_schema: https://w3id.org/include rank: 1000 alias: ethnicity domain_of: - Participant range: enum_ethnicity required: true","title":"Slot: Ethnicity (ethnicity)"},{"location":"ethnicity/#slot-ethnicity-ethnicity","text":"Ethnicity of Participant URI: include:ethnicity","title":"Slot: Ethnicity (ethnicity)"},{"location":"ethnicity/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"ethnicity/#properties","text":"Range: EnumEthnicity Required: True","title":"Properties"},{"location":"ethnicity/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ethnicity/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"ethnicity/#linkml-source","text":"name: ethnicity definition_uri: include:ethnicity description: Ethnicity of Participant title: Ethnicity from_schema: https://w3id.org/include rank: 1000 alias: ethnicity domain_of: - Participant range: enum_ethnicity required: true","title":"LinkML Source"},{"location":"eventId/","text":"Slot: Event ID (eventId) Identifier for event (Visit, Survey completion, Sample collection, etc.) to which the Condition data are linked, if applicable. 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URI: include:eventId","title":"Slot: Event ID (eventId)"},{"location":"eventId/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"eventId/#properties","text":"Range: NONE","title":"Properties"},{"location":"eventId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"eventId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"eventId/#linkml-source","text":"name: eventId definition_uri: include:eventId description: Identifier for event (Visit, Survey completion, Sample collection, etc.) to which the Condition data are linked, if applicable. 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Condition","title":"LinkML Source"},{"location":"experimentalPlatform/","text":"Slot: Experimental Platform (experimentalPlatform) Specific platform used to perform experiment (e.g. SOMAscan, MSD, Luminex, Illumina) URI: include:experimentalPlatform Applicable Classes Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: experimentalPlatform definition_uri: include:experimentalPlatform description: Specific platform used to perform experiment (e.g. SOMAscan, MSD, Luminex, Illumina) title: Experimental Platform from_schema: https://w3id.org/include rank: 1000 alias: experimentalPlatform domain_of: - DataFile range: string","title":"Slot: Experimental Platform (experimentalPlatform)"},{"location":"experimentalPlatform/#slot-experimental-platform-experimentalplatform","text":"Specific platform used to perform experiment (e.g. SOMAscan, MSD, Luminex, Illumina) URI: include:experimentalPlatform","title":"Slot: Experimental Platform (experimentalPlatform)"},{"location":"experimentalPlatform/#applicable-classes","text":"Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"experimentalPlatform/#properties","text":"Range: String","title":"Properties"},{"location":"experimentalPlatform/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"experimentalPlatform/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"experimentalPlatform/#linkml-source","text":"name: experimentalPlatform definition_uri: include:experimentalPlatform description: Specific platform used to perform experiment (e.g. SOMAscan, MSD, Luminex, Illumina) title: Experimental Platform from_schema: https://w3id.org/include rank: 1000 alias: experimentalPlatform domain_of: - 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DataFile range: string","title":"LinkML Source"},{"location":"familyId/","text":"Slot: Family ID (familyId) Unique identifer for family to which Participant belongs, assigned by data contributor URI: include:familyId Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: familyId definition_uri: include:familyId description: Unique identifer for family to which Participant belongs, assigned by data contributor title: Family ID from_schema: https://w3id.org/include rank: 1000 alias: familyId domain_of: - Participant range: string","title":"Slot: Family ID (familyId)"},{"location":"familyId/#slot-family-id-familyid","text":"Unique identifer for family to which Participant belongs, assigned by data contributor URI: include:familyId","title":"Slot: Family ID (familyId)"},{"location":"familyId/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"familyId/#properties","text":"Range: String","title":"Properties"},{"location":"familyId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"familyId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"familyId/#linkml-source","text":"name: familyId definition_uri: include:familyId description: Unique identifer for family to which Participant belongs, assigned by data contributor title: Family ID from_schema: https://w3id.org/include rank: 1000 alias: familyId domain_of: - Participant range: string","title":"LinkML Source"},{"location":"familyRelationship/","text":"Slot: Family Relationship (familyRelationship) Relationship of Participant to proband URI: include:familyRelationship Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: EnumFamilyRelationship Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: familyRelationship definition_uri: include:familyRelationship description: Relationship of Participant to proband title: Family Relationship from_schema: https://w3id.org/include rank: 1000 alias: familyRelationship domain_of: - Participant range: enum_familyRelationship required: true","title":"Slot: Family Relationship (familyRelationship)"},{"location":"familyRelationship/#slot-family-relationship-familyrelationship","text":"Relationship of Participant to proband URI: include:familyRelationship","title":"Slot: Family Relationship (familyRelationship)"},{"location":"familyRelationship/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"familyRelationship/#properties","text":"Range: EnumFamilyRelationship Required: True","title":"Properties"},{"location":"familyRelationship/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"familyRelationship/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"familyRelationship/#linkml-source","text":"name: familyRelationship definition_uri: include:familyRelationship description: Relationship of Participant to proband title: Family Relationship from_schema: https://w3id.org/include rank: 1000 alias: familyRelationship domain_of: - Participant range: enum_familyRelationship required: true","title":"LinkML Source"},{"location":"familyType/","text":"Slot: Family Type (familyType) Structure of family members participating in the study URI: include:familyType Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: EnumFamilyType Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: familyType definition_uri: include:familyType description: Structure of family members participating in the study title: Family Type from_schema: https://w3id.org/include rank: 1000 alias: familyType domain_of: - Participant range: enum_familyType required: true","title":"Slot: Family Type (familyType)"},{"location":"familyType/#slot-family-type-familytype","text":"Structure of family members participating in the study URI: include:familyType","title":"Slot: Family Type (familyType)"},{"location":"familyType/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"familyType/#properties","text":"Range: EnumFamilyType Required: True","title":"Properties"},{"location":"familyType/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"familyType/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"familyType/#linkml-source","text":"name: familyType definition_uri: include:familyType description: Structure of family members participating in the study title: Family Type from_schema: https://w3id.org/include rank: 1000 alias: familyType domain_of: - Participant range: enum_familyType required: true","title":"LinkML Source"},{"location":"fatherId/","text":"Slot: Father ID (fatherId) Participant External ID for Participant's father (NA if Participant is not the proband) URI: include:fatherId Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: fatherId definition_uri: include:fatherId description: Participant External ID for Participant's father (NA if Participant is not the proband) title: Father ID from_schema: https://w3id.org/include rank: 1000 alias: fatherId domain_of: - Participant range: string","title":"Slot: Father ID (fatherId)"},{"location":"fatherId/#slot-father-id-fatherid","text":"Participant External ID for Participant's father (NA if Participant is not the proband) URI: include:fatherId","title":"Slot: Father ID (fatherId)"},{"location":"fatherId/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"fatherId/#properties","text":"Range: String","title":"Properties"},{"location":"fatherId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"fatherId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"fatherId/#linkml-source","text":"name: fatherId definition_uri: include:fatherId description: Participant External ID for Participant's father (NA if Participant is not the proband) title: Father ID from_schema: https://w3id.org/include rank: 1000 alias: fatherId domain_of: - Participant range: string","title":"LinkML Source"},{"location":"fileExternalId/","text":"Slot: File External ID (fileExternalId) Unique identifier for data file, assigned by data contributor URI: include:fileExternalId Applicable Classes Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: fileExternalId definition_uri: include:fileExternalId description: Unique identifier for data file, assigned by data contributor title: File External ID from_schema: https://w3id.org/include rank: 1000 alias: fileExternalId domain_of: - DataFile range: string required: true","title":"Slot: File External ID (fileExternalId)"},{"location":"fileExternalId/#slot-file-external-id-fileexternalid","text":"Unique identifier for data file, assigned by data contributor URI: include:fileExternalId","title":"Slot: File External ID (fileExternalId)"},{"location":"fileExternalId/#applicable-classes","text":"Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"fileExternalId/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"fileExternalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"fileExternalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"fileExternalId/#linkml-source","text":"name: fileExternalId definition_uri: include:fileExternalId description: Unique identifier for data file, assigned by data contributor title: File External ID from_schema: https://w3id.org/include rank: 1000 alias: fileExternalId domain_of: - DataFile range: string required: true","title":"LinkML Source"},{"location":"fileFormat/","text":"Slot: File Format (fileFormat) Format of file (e.g. tsv, cram, gvcf, vcf, maf, txt, pdf, html, png) URI: include:fileFormat Applicable Classes Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: fileFormat definition_uri: include:fileFormat description: Format of file (e.g. tsv, cram, gvcf, vcf, maf, txt, pdf, html, png) title: File Format from_schema: https://w3id.org/include rank: 1000 alias: fileFormat domain_of: - DataFile range: string required: true","title":"Slot: File Format (fileFormat)"},{"location":"fileFormat/#slot-file-format-fileformat","text":"Format of file (e.g. tsv, cram, gvcf, vcf, maf, txt, pdf, html, png) URI: include:fileFormat","title":"Slot: File Format (fileFormat)"},{"location":"fileFormat/#applicable-classes","text":"Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"fileFormat/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"fileFormat/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"fileFormat/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"fileFormat/#linkml-source","text":"name: fileFormat definition_uri: include:fileFormat description: Format of file (e.g. tsv, cram, gvcf, vcf, maf, txt, pdf, html, png) title: File Format from_schema: https://w3id.org/include rank: 1000 alias: fileFormat domain_of: - DataFile range: string required: true","title":"LinkML Source"},{"location":"fileGlobalId/","text":"Slot: File Global ID (fileGlobalId) INCLUDE global file identifier, assigned by DCC URI: include:fileGlobalId Applicable Classes Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: fileGlobalId definition_uri: include:fileGlobalId description: INCLUDE global file identifier, assigned by DCC title: File Global ID from_schema: https://w3id.org/include rank: 1000 alias: fileGlobalId domain_of: - DataFile range: string required: true","title":"Slot: File Global ID (fileGlobalId)"},{"location":"fileGlobalId/#slot-file-global-id-fileglobalid","text":"INCLUDE global file identifier, assigned by DCC URI: include:fileGlobalId","title":"Slot: File Global ID (fileGlobalId)"},{"location":"fileGlobalId/#applicable-classes","text":"Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"fileGlobalId/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"fileGlobalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"fileGlobalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"fileGlobalId/#linkml-source","text":"name: fileGlobalId definition_uri: include:fileGlobalId description: INCLUDE global file identifier, assigned by DCC title: File Global ID from_schema: https://w3id.org/include rank: 1000 alias: fileGlobalId domain_of: - DataFile range: string required: true","title":"LinkML Source"},{"location":"fileHash/","text":"Slot: File Hash (fileHash) md5 hash of this file for validation (if known) URI: include:fileHash Applicable Classes Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: fileHash definition_uri: include:fileHash description: md5 hash of this file for validation (if known) title: File Hash from_schema: https://w3id.org/include rank: 1000 alias: fileHash domain_of: - DataFile range: string","title":"Slot: File Hash (fileHash)"},{"location":"fileHash/#slot-file-hash-filehash","text":"md5 hash of this file for validation (if known) URI: include:fileHash","title":"Slot: File Hash (fileHash)"},{"location":"fileHash/#applicable-classes","text":"Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"fileHash/#properties","text":"Range: String","title":"Properties"},{"location":"fileHash/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"fileHash/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"fileHash/#linkml-source","text":"name: fileHash definition_uri: include:fileHash description: md5 hash of this file for validation (if known) title: File Hash from_schema: https://w3id.org/include rank: 1000 alias: fileHash domain_of: - DataFile range: string","title":"LinkML Source"},{"location":"fileName/","text":"Slot: File Name (fileName) Name of file, assigned by data contributor URI: include:fileName Applicable Classes Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: fileName definition_uri: include:fileName description: Name of file, assigned by data contributor title: File Name from_schema: https://w3id.org/include rank: 1000 alias: fileName domain_of: - DataFile range: string required: true","title":"Slot: File Name (fileName)"},{"location":"fileName/#slot-file-name-filename","text":"Name of file, assigned by data contributor URI: include:fileName","title":"Slot: File Name (fileName)"},{"location":"fileName/#applicable-classes","text":"Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"fileName/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"fileName/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"fileName/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"fileName/#linkml-source","text":"name: fileName definition_uri: include:fileName description: Name of file, assigned by data contributor title: File Name from_schema: https://w3id.org/include rank: 1000 alias: fileName domain_of: - DataFile range: string required: true","title":"LinkML Source"},{"location":"fileSize/","text":"Slot: File Size (fileSize) Size of file, if known (mainly important if large) URI: include:fileSize Applicable Classes Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: Integer Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: fileSize definition_uri: include:fileSize description: Size of file, if known (mainly important if large) title: File Size from_schema: https://w3id.org/include rank: 1000 alias: fileSize domain_of: - DataFile range: integer","title":"Slot: File Size (fileSize)"},{"location":"fileSize/#slot-file-size-filesize","text":"Size of file, if known (mainly important if large) URI: include:fileSize","title":"Slot: File Size (fileSize)"},{"location":"fileSize/#applicable-classes","text":"Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"fileSize/#properties","text":"Range: Integer","title":"Properties"},{"location":"fileSize/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"fileSize/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"fileSize/#linkml-source","text":"name: fileSize definition_uri: include:fileSize description: Size of file, if known (mainly important if large) title: File Size from_schema: https://w3id.org/include rank: 1000 alias: fileSize domain_of: - DataFile range: integer","title":"LinkML Source"},{"location":"fileSizeUnit/","text":"Slot: File Size Unit (fileSizeUnit) Unit of file size URI: include:fileSizeUnit Applicable Classes Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: fileSizeUnit definition_uri: include:fileSizeUnit description: Unit of file size title: File Size Unit from_schema: https://w3id.org/include rank: 1000 alias: fileSizeUnit domain_of: - DataFile range: string","title":"Slot: File Size Unit (fileSizeUnit)"},{"location":"fileSizeUnit/#slot-file-size-unit-filesizeunit","text":"Unit of file size URI: include:fileSizeUnit","title":"Slot: File Size Unit (fileSizeUnit)"},{"location":"fileSizeUnit/#applicable-classes","text":"Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"fileSizeUnit/#properties","text":"Range: String","title":"Properties"},{"location":"fileSizeUnit/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"fileSizeUnit/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"fileSizeUnit/#linkml-source","text":"name: fileSizeUnit definition_uri: include:fileSizeUnit description: Unit of file size title: File Size Unit from_schema: https://w3id.org/include rank: 1000 alias: fileSizeUnit domain_of: - DataFile range: string","title":"LinkML Source"},{"location":"firstPatientEngagementEvent/","text":"Slot: First Patient Engagement Event (firstPatientEngagementEvent) Event for which Age at First Patient Engagement is given (e.g. enrollment, visit, observation, sample collection, survey completion, etc.). Age at enrollment is preferred, if available. URI: include:firstPatientEngagementEvent Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: NONE Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: firstPatientEngagementEvent definition_uri: include:firstPatientEngagementEvent description: Event for which Age at First Patient Engagement is given (e.g. enrollment, visit, observation, sample collection, survey completion, etc.). 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URI: include:firstPatientEngagementEvent","title":"Slot: First Patient Engagement Event (firstPatientEngagementEvent)"},{"location":"firstPatientEngagementEvent/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"firstPatientEngagementEvent/#properties","text":"Range: NONE Required: True","title":"Properties"},{"location":"firstPatientEngagementEvent/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"firstPatientEngagementEvent/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"firstPatientEngagementEvent/#linkml-source","text":"name: firstPatientEngagementEvent definition_uri: include:firstPatientEngagementEvent description: Event for which Age at First Patient Engagement is given (e.g. enrollment, visit, observation, sample collection, survey completion, etc.). 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Condition - Biospecimen - DataFile range: Participant","title":"LinkML Source"},{"location":"hasStudy/","text":"Slot: Has Study (hasStudy) Link to a Study URI: include:hasStudy Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Condition Co-occurring conditions and other observations for the participant no Biospecimen A Biospecimen Collected from A Participant no DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: Study Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy domain_of: - Participant - Condition - Biospecimen - DataFile range: Study","title":"Slot: Has Study (hasStudy)"},{"location":"hasStudy/#slot-has-study-hasstudy","text":"Link to a Study URI: include:hasStudy","title":"Slot: Has Study (hasStudy)"},{"location":"hasStudy/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no Condition Co-occurring conditions and other observations for the participant no Biospecimen A Biospecimen Collected from A Participant no DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"hasStudy/#properties","text":"Range: Study","title":"Properties"},{"location":"hasStudy/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"hasStudy/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"hasStudy/#linkml-source","text":"name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy domain_of: - 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Condition range: string","title":"LinkML Source"},{"location":"hpoLabel/","text":"Slot: HPO Label (hpoLabel) Label for Condition in the Human Phenotype Ontology (HPO) URI: include:hpoLabel Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: hpoLabel definition_uri: include:hpoLabel description: Label for Condition in the Human Phenotype Ontology (HPO) title: HPO Label from_schema: https://w3id.org/include rank: 1000 alias: hpoLabel domain_of: - Condition range: string","title":"Slot: HPO Label (hpoLabel)"},{"location":"hpoLabel/#slot-hpo-label-hpolabel","text":"Label for Condition in the Human Phenotype Ontology (HPO) URI: include:hpoLabel","title":"Slot: HPO Label (hpoLabel)"},{"location":"hpoLabel/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"hpoLabel/#properties","text":"Range: String","title":"Properties"},{"location":"hpoLabel/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"hpoLabel/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"hpoLabel/#linkml-source","text":"name: hpoLabel definition_uri: include:hpoLabel description: Label for Condition in the Human Phenotype Ontology (HPO) title: HPO Label from_schema: https://w3id.org/include rank: 1000 alias: hpoLabel domain_of: - 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Biospecimen range: string","title":"Slot: Laboratory Procedure (laboratoryProcedure)"},{"location":"laboratoryProcedure/#slot-laboratory-procedure-laboratoryprocedure","text":"Procedure by which Sample was derived from Parent Sample (e.g. Centrifugation, RBC lysis, Lyse/fix buffer, FACS, PAXgene DNA, PAXgene RNA, Qiagen Allprep, Ficoll) URI: include:laboratoryProcedure","title":"Slot: Laboratory Procedure (laboratoryProcedure)"},{"location":"laboratoryProcedure/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"laboratoryProcedure/#properties","text":"Range: String","title":"Properties"},{"location":"laboratoryProcedure/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"laboratoryProcedure/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"laboratoryProcedure/#linkml-source","text":"name: laboratoryProcedure definition_uri: include:laboratoryProcedure description: Procedure by which Sample was derived from Parent Sample (e.g. Centrifugation, RBC lysis, Lyse/fix buffer, FACS, PAXgene DNA, PAXgene RNA, Qiagen Allprep, Ficoll) title: Laboratory Procedure from_schema: https://w3id.org/include rank: 1000 alias: laboratoryProcedure domain_of: - 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Condition range: string","title":"LinkML Source"},{"location":"maxoLabel/","text":"Slot: MAXO Label (maxoLabel) Label for Condition in the Medical Action Ontology (MAXO) URI: include:maxoLabel Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: maxoLabel definition_uri: include:maxoLabel description: Label for Condition in the Medical Action Ontology (MAXO) title: MAXO Label from_schema: https://w3id.org/include rank: 1000 alias: maxoLabel domain_of: - Condition range: string","title":"Slot: MAXO Label (maxoLabel)"},{"location":"maxoLabel/#slot-maxo-label-maxolabel","text":"Label for Condition in the Medical Action Ontology (MAXO) URI: include:maxoLabel","title":"Slot: MAXO Label (maxoLabel)"},{"location":"maxoLabel/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"maxoLabel/#properties","text":"Range: String","title":"Properties"},{"location":"maxoLabel/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"maxoLabel/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"maxoLabel/#linkml-source","text":"name: maxoLabel definition_uri: include:maxoLabel description: Label for Condition in the Medical Action Ontology (MAXO) title: MAXO Label from_schema: https://w3id.org/include rank: 1000 alias: maxoLabel domain_of: - 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Condition range: integer","title":"LinkML Source"},{"location":"mondoCode/","text":"Slot: MONDO Code (mondoCode) Code for Condition in the Mondo Disease Ontology (Mondo) URI: include:mondoCode Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: mondoCode definition_uri: include:mondoCode description: Code for Condition in the Mondo Disease Ontology (Mondo) title: MONDO Code from_schema: https://w3id.org/include rank: 1000 alias: mondoCode domain_of: - Condition range: string","title":"Slot: MONDO Code (mondoCode)"},{"location":"mondoCode/#slot-mondo-code-mondocode","text":"Code for Condition in the Mondo Disease Ontology (Mondo) URI: include:mondoCode","title":"Slot: MONDO Code (mondoCode)"},{"location":"mondoCode/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"mondoCode/#properties","text":"Range: String","title":"Properties"},{"location":"mondoCode/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"mondoCode/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"mondoCode/#linkml-source","text":"name: mondoCode definition_uri: include:mondoCode description: Code for Condition in the Mondo Disease Ontology (Mondo) title: MONDO Code from_schema: https://w3id.org/include rank: 1000 alias: mondoCode domain_of: - Condition range: string","title":"LinkML Source"},{"location":"mondoLabel/","text":"Slot: MONDO Label (mondoLabel) Label for Condition in the Mondo Disease Ontology (MONDO) URI: include:mondoLabel Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: mondoLabel definition_uri: include:mondoLabel description: Label for Condition in the Mondo Disease Ontology (MONDO) title: MONDO Label from_schema: https://w3id.org/include rank: 1000 alias: mondoLabel domain_of: - Condition range: string","title":"Slot: MONDO Label (mondoLabel)"},{"location":"mondoLabel/#slot-mondo-label-mondolabel","text":"Label for Condition in the Mondo Disease Ontology (MONDO) URI: include:mondoLabel","title":"Slot: MONDO Label (mondoLabel)"},{"location":"mondoLabel/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"mondoLabel/#properties","text":"Range: String","title":"Properties"},{"location":"mondoLabel/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"mondoLabel/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"mondoLabel/#linkml-source","text":"name: mondoLabel definition_uri: include:mondoLabel description: Label for Condition in the Mondo Disease Ontology (MONDO) title: MONDO Label from_schema: https://w3id.org/include rank: 1000 alias: mondoLabel domain_of: - Condition range: string","title":"LinkML Source"},{"location":"motherId/","text":"Slot: Mother ID (motherId) Participant External ID for Participant's mother (NA if Participant is not the proband) URI: include:motherId Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: motherId definition_uri: include:motherId description: Participant External ID for Participant's mother (NA if Participant is not the proband) title: Mother ID from_schema: https://w3id.org/include rank: 1000 alias: motherId domain_of: - Participant range: string","title":"Slot: Mother ID (motherId)"},{"location":"motherId/#slot-mother-id-motherid","text":"Participant External ID for Participant's mother (NA if Participant is not the proband) URI: include:motherId","title":"Slot: Mother ID (motherId)"},{"location":"motherId/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"motherId/#properties","text":"Range: String","title":"Properties"},{"location":"motherId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"motherId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"motherId/#linkml-source","text":"name: motherId definition_uri: include:motherId description: Participant External ID for Participant's mother (NA if Participant is not the proband) title: Mother ID from_schema: https://w3id.org/include rank: 1000 alias: motherId domain_of: - 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Participant range: string","title":"LinkML Source"},{"location":"otherLabel/","text":"Slot: Other Label (otherLabel) Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) URI: include:otherLabel Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: otherLabel definition_uri: include:otherLabel description: Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Label from_schema: https://w3id.org/include rank: 1000 alias: otherLabel domain_of: - Condition range: string","title":"Slot: Other Label (otherLabel)"},{"location":"otherLabel/#slot-other-label-otherlabel","text":"Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) URI: include:otherLabel","title":"Slot: Other Label (otherLabel)"},{"location":"otherLabel/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"otherLabel/#properties","text":"Range: String","title":"Properties"},{"location":"otherLabel/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"otherLabel/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"otherLabel/#linkml-source","text":"name: otherLabel definition_uri: include:otherLabel description: Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Label from_schema: https://w3id.org/include rank: 1000 alias: otherLabel domain_of: - Condition range: string","title":"LinkML Source"},{"location":"outcomesVitalStatus/","text":"Slot: Outcomes Vital Status (outcomesVitalStatus) Whether participant is alive or dead URI: include:outcomesVitalStatus Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: EnumVitalStatus Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: outcomesVitalStatus definition_uri: include:outcomesVitalStatus description: Whether participant is alive or dead title: Outcomes Vital Status from_schema: https://w3id.org/include rank: 1000 alias: outcomesVitalStatus domain_of: - Participant range: enum_vital_status","title":"Slot: Outcomes Vital Status (outcomesVitalStatus)"},{"location":"outcomesVitalStatus/#slot-outcomes-vital-status-outcomesvitalstatus","text":"Whether participant is alive or dead URI: include:outcomesVitalStatus","title":"Slot: Outcomes Vital Status (outcomesVitalStatus)"},{"location":"outcomesVitalStatus/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"outcomesVitalStatus/#properties","text":"Range: EnumVitalStatus","title":"Properties"},{"location":"outcomesVitalStatus/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"outcomesVitalStatus/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"outcomesVitalStatus/#linkml-source","text":"name: outcomesVitalStatus definition_uri: include:outcomesVitalStatus description: Whether participant is alive or dead title: Outcomes Vital Status from_schema: https://w3id.org/include rank: 1000 alias: outcomesVitalStatus domain_of: - Participant range: enum_vital_status","title":"LinkML Source"},{"location":"parentSampleExternalId/","text":"Slot: Parent Sample External ID (parentSampleExternalId) Identifier for the direct parent from which Sample was derived, processed, pooled, etc. (if applicable); assigned by data contributor URI: include:parentSampleExternalId Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: parentSampleExternalId definition_uri: include:parentSampleExternalId description: Identifier for the direct parent from which Sample was derived, processed, pooled, etc. (if applicable); assigned by data contributor title: Parent Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleExternalId domain_of: - Biospecimen range: string","title":"Slot: Parent Sample External ID (parentSampleExternalId)"},{"location":"parentSampleExternalId/#slot-parent-sample-external-id-parentsampleexternalid","text":"Identifier for the direct parent from which Sample was derived, processed, pooled, etc. (if applicable); assigned by data contributor URI: include:parentSampleExternalId","title":"Slot: Parent Sample External ID (parentSampleExternalId)"},{"location":"parentSampleExternalId/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"parentSampleExternalId/#properties","text":"Range: String","title":"Properties"},{"location":"parentSampleExternalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"parentSampleExternalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"parentSampleExternalId/#linkml-source","text":"name: parentSampleExternalId definition_uri: include:parentSampleExternalId description: Identifier for the direct parent from which Sample was derived, processed, pooled, etc. (if applicable); assigned by data contributor title: Parent Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleExternalId domain_of: - Biospecimen range: string","title":"LinkML Source"},{"location":"parentSampleGlobalId/","text":"Slot: Parent Sample Global ID (parentSampleGlobalId) INCLUDE global identifier for the direct parent from which Sample was derived, assigned by DCC URI: include:parentSampleGlobalId Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: parentSampleGlobalId definition_uri: include:parentSampleGlobalId description: INCLUDE global identifier for the direct parent from which Sample was derived, assigned by DCC title: Parent Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleGlobalId domain_of: - Biospecimen range: string","title":"Slot: Parent Sample Global ID (parentSampleGlobalId)"},{"location":"parentSampleGlobalId/#slot-parent-sample-global-id-parentsampleglobalid","text":"INCLUDE global identifier for the direct parent from which Sample was derived, assigned by DCC URI: include:parentSampleGlobalId","title":"Slot: Parent Sample Global ID (parentSampleGlobalId)"},{"location":"parentSampleGlobalId/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"parentSampleGlobalId/#properties","text":"Range: String","title":"Properties"},{"location":"parentSampleGlobalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"parentSampleGlobalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"parentSampleGlobalId/#linkml-source","text":"name: parentSampleGlobalId definition_uri: include:parentSampleGlobalId description: INCLUDE global identifier for the direct parent from which Sample was derived, assigned by DCC title: Parent Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleGlobalId domain_of: - Biospecimen range: string","title":"LinkML Source"},{"location":"parentSampleType/","text":"Slot: Parent Sample Type (parentSampleType) Type of biological material comprising the Parent Sample (e.g. Peripheral Whole Blood, Derived Cell Line, Saliva, Whole blood, WBCs) URI: include:parentSampleType Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: parentSampleType definition_uri: include:parentSampleType description: Type of biological material comprising the Parent Sample (e.g. Peripheral Whole Blood, Derived Cell Line, Saliva, Whole blood, WBCs) title: Parent Sample Type from_schema: https://w3id.org/include rank: 1000 alias: parentSampleType domain_of: - Biospecimen range: string","title":"Slot: Parent Sample Type (parentSampleType)"},{"location":"parentSampleType/#slot-parent-sample-type-parentsampletype","text":"Type of biological material comprising the Parent Sample (e.g. Peripheral Whole Blood, Derived Cell Line, Saliva, Whole blood, WBCs) URI: include:parentSampleType","title":"Slot: Parent Sample Type (parentSampleType)"},{"location":"parentSampleType/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"parentSampleType/#properties","text":"Range: String","title":"Properties"},{"location":"parentSampleType/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"parentSampleType/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"parentSampleType/#linkml-source","text":"name: parentSampleType definition_uri: include:parentSampleType description: Type of biological material comprising the Parent Sample (e.g. Peripheral Whole Blood, Derived Cell Line, Saliva, Whole blood, WBCs) title: Parent Sample Type from_schema: https://w3id.org/include rank: 1000 alias: parentSampleType domain_of: - Biospecimen range: string","title":"LinkML Source"},{"location":"participantExternalId/","text":"Slot: Participant External ID (participantExternalId) Unique, de-identified identifier for the participant, assigned by data contributor. External IDs must be two steps removed from personal information in the study records. URI: include:participantExternalId Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: participantExternalId definition_uri: include:participantExternalId description: Unique, de-identified identifier for the participant, assigned by data contributor. External IDs must be two steps removed from personal information in the study records. title: Participant External ID from_schema: https://w3id.org/include rank: 1000 alias: participantExternalId domain_of: - Participant range: string required: true","title":"Slot: Participant External ID (participantExternalId)"},{"location":"participantExternalId/#slot-participant-external-id-participantexternalid","text":"Unique, de-identified identifier for the participant, assigned by data contributor. External IDs must be two steps removed from personal information in the study records. URI: include:participantExternalId","title":"Slot: Participant External ID (participantExternalId)"},{"location":"participantExternalId/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"participantExternalId/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"participantExternalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"participantExternalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"participantExternalId/#linkml-source","text":"name: participantExternalId definition_uri: include:participantExternalId description: Unique, de-identified identifier for the participant, assigned by data contributor. External IDs must be two steps removed from personal information in the study records. title: Participant External ID from_schema: https://w3id.org/include rank: 1000 alias: participantExternalId domain_of: - Participant range: string required: true","title":"LinkML Source"},{"location":"participantGlobalId/","text":"Slot: Participant Global ID (participantGlobalId) Unique INCLUDE global identifier for the participant, assigned by DCC URI: include:participantGlobalId Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: participantGlobalId definition_uri: include:participantGlobalId description: Unique INCLUDE global identifier for the participant, assigned by DCC title: Participant Global ID from_schema: https://w3id.org/include rank: 1000 alias: participantGlobalId domain_of: - Participant range: string required: true","title":"Slot: Participant Global ID (participantGlobalId)"},{"location":"participantGlobalId/#slot-participant-global-id-participantglobalid","text":"Unique INCLUDE global identifier for the participant, assigned by DCC URI: include:participantGlobalId","title":"Slot: Participant Global ID (participantGlobalId)"},{"location":"participantGlobalId/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"participantGlobalId/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"participantGlobalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"participantGlobalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"participantGlobalId/#linkml-source","text":"name: participantGlobalId definition_uri: include:participantGlobalId description: Unique INCLUDE global identifier for the participant, assigned by DCC title: Participant Global ID from_schema: https://w3id.org/include rank: 1000 alias: participantGlobalId domain_of: - Participant range: string required: true","title":"LinkML Source"},{"location":"program/","text":"Slot: Program (program) Funding source for the study URI: include:program Applicable Classes Name Description Modifies Slot Study General information about the study no Properties Range: EnumProgram Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: program definition_uri: include:program description: Funding source for the study title: Program from_schema: https://w3id.org/include rank: 1000 alias: program domain_of: - Study range: enum_program required: true","title":"Slot: Program (program)"},{"location":"program/#slot-program-program","text":"Funding source for the study URI: include:program","title":"Slot: Program (program)"},{"location":"program/#applicable-classes","text":"Name Description Modifies Slot Study General information about the study no","title":"Applicable Classes"},{"location":"program/#properties","text":"Range: EnumProgram Required: True","title":"Properties"},{"location":"program/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"program/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"program/#linkml-source","text":"name: program definition_uri: include:program description: Funding source for the study title: Program from_schema: https://w3id.org/include rank: 1000 alias: program domain_of: - Study range: enum_program required: true","title":"LinkML Source"},{"location":"publicationDoi/","text":"Slot: Publication DOI (publicationDoi) DOI of publication associated with this file, if published URI: include:publicationDoi Applicable Classes Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: publicationDoi definition_uri: include:publicationDoi description: DOI of publication associated with this file, if published title: Publication DOI from_schema: https://w3id.org/include rank: 1000 alias: publicationDoi domain_of: - DataFile range: string","title":"Slot: Publication DOI (publicationDoi)"},{"location":"publicationDoi/#slot-publication-doi-publicationdoi","text":"DOI of publication associated with this file, if published URI: include:publicationDoi","title":"Slot: Publication DOI (publicationDoi)"},{"location":"publicationDoi/#applicable-classes","text":"Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"publicationDoi/#properties","text":"Range: String","title":"Properties"},{"location":"publicationDoi/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"publicationDoi/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"publicationDoi/#linkml-source","text":"name: publicationDoi definition_uri: include:publicationDoi description: DOI of publication associated with this file, if published title: Publication DOI from_schema: https://w3id.org/include rank: 1000 alias: publicationDoi domain_of: - DataFile range: string","title":"LinkML Source"},{"location":"race/","text":"Slot: Race (race) Race of Participant URI: include:race Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: EnumRace Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: race definition_uri: include:race description: Race of Participant title: Race from_schema: https://w3id.org/include rank: 1000 alias: race domain_of: - Participant range: enum_race required: true","title":"Slot: Race (race)"},{"location":"race/#slot-race-race","text":"Race of Participant URI: include:race","title":"Slot: Race (race)"},{"location":"race/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"race/#properties","text":"Range: EnumRace Required: True","title":"Properties"},{"location":"race/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"race/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"race/#linkml-source","text":"name: race definition_uri: include:race description: Race of Participant title: Race from_schema: https://w3id.org/include rank: 1000 alias: race domain_of: - Participant range: enum_race required: true","title":"LinkML Source"},{"location":"sampleAvailability/","text":"Slot: Sample Availability (sampleAvailability) Whether or not the sample is potentially available for sharing through the Virtual Biorepository URI: include:sampleAvailability Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: EnumSampleAvailability Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: sampleAvailability definition_uri: include:sampleAvailability description: Whether or not the sample is potentially available for sharing through the Virtual Biorepository title: Sample Availability from_schema: https://w3id.org/include rank: 1000 alias: sampleAvailability domain_of: - Biospecimen range: enum_sampleAvailability required: true","title":"Slot: Sample Availability (sampleAvailability)"},{"location":"sampleAvailability/#slot-sample-availability-sampleavailability","text":"Whether or not the sample is potentially available for sharing through the Virtual Biorepository URI: include:sampleAvailability","title":"Slot: Sample Availability (sampleAvailability)"},{"location":"sampleAvailability/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"sampleAvailability/#properties","text":"Range: EnumSampleAvailability Required: True","title":"Properties"},{"location":"sampleAvailability/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"sampleAvailability/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"sampleAvailability/#linkml-source","text":"name: sampleAvailability definition_uri: include:sampleAvailability description: Whether or not the sample is potentially available for sharing through the Virtual Biorepository title: Sample Availability from_schema: https://w3id.org/include rank: 1000 alias: sampleAvailability domain_of: - Biospecimen range: enum_sampleAvailability required: true","title":"LinkML Source"},{"location":"sampleExternalId/","text":"Slot: Sample External ID (sampleExternalId) Unique identifier for sample, assigned by data contributor. A sample is a unique biological material; two samples with two different IDs are biologically distinct. URI: include:sampleExternalId Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: sampleExternalId definition_uri: include:sampleExternalId description: Unique identifier for sample, assigned by data contributor. A sample is a unique biological material; two samples with two different IDs are biologically distinct. title: Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: sampleExternalId domain_of: - Biospecimen range: string required: true","title":"Slot: Sample External ID (sampleExternalId)"},{"location":"sampleExternalId/#slot-sample-external-id-sampleexternalid","text":"Unique identifier for sample, assigned by data contributor. A sample is a unique biological material; two samples with two different IDs are biologically distinct. URI: include:sampleExternalId","title":"Slot: Sample External ID (sampleExternalId)"},{"location":"sampleExternalId/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"sampleExternalId/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"sampleExternalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"sampleExternalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"sampleExternalId/#linkml-source","text":"name: sampleExternalId definition_uri: include:sampleExternalId description: Unique identifier for sample, assigned by data contributor. A sample is a unique biological material; two samples with two different IDs are biologically distinct. title: Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: sampleExternalId domain_of: - Biospecimen range: string required: true","title":"LinkML Source"},{"location":"sampleGlobalId/","text":"Slot: Sample Global ID (sampleGlobalId) INCLUDE global identifier for sample, assigned by DCC URI: include:sampleGlobalId Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: sampleGlobalId definition_uri: include:sampleGlobalId description: INCLUDE global identifier for sample, assigned by DCC title: Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: sampleGlobalId domain_of: - Biospecimen range: string required: true","title":"Slot: Sample Global ID (sampleGlobalId)"},{"location":"sampleGlobalId/#slot-sample-global-id-sampleglobalid","text":"INCLUDE global identifier for sample, assigned by DCC URI: include:sampleGlobalId","title":"Slot: Sample Global ID (sampleGlobalId)"},{"location":"sampleGlobalId/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"sampleGlobalId/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"sampleGlobalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"sampleGlobalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"sampleGlobalId/#linkml-source","text":"name: sampleGlobalId definition_uri: include:sampleGlobalId description: INCLUDE global identifier for sample, assigned by DCC title: Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: sampleGlobalId domain_of: - Biospecimen range: string required: true","title":"LinkML Source"},{"location":"sampleType/","text":"Slot: Sample Type (sampleType) Type of biological material comprising the Sample (e.g. Plasma, White blood cells, Red blood cells, DNA, RNA, Peripheral blood mononuclear cells, CD4+ Tconv cells, NK cells, Monocytes, CD8+ T cells, B cells, Granulocytes, Treg cells) URI: include:sampleType Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: sampleType definition_uri: include:sampleType description: Type of biological material comprising the Sample (e.g. Plasma, White blood cells, Red blood cells, DNA, RNA, Peripheral blood mononuclear cells, CD4+ Tconv cells, NK cells, Monocytes, CD8+ T cells, B cells, Granulocytes, Treg cells) title: Sample Type from_schema: https://w3id.org/include rank: 1000 alias: sampleType domain_of: - Biospecimen range: string required: true","title":"Slot: Sample Type (sampleType)"},{"location":"sampleType/#slot-sample-type-sampletype","text":"Type of biological material comprising the Sample (e.g. Plasma, White blood cells, Red blood cells, DNA, RNA, Peripheral blood mononuclear cells, CD4+ Tconv cells, NK cells, Monocytes, CD8+ T cells, B cells, Granulocytes, Treg cells) URI: include:sampleType","title":"Slot: Sample Type (sampleType)"},{"location":"sampleType/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"sampleType/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"sampleType/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"sampleType/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"sampleType/#linkml-source","text":"name: sampleType definition_uri: include:sampleType description: Type of biological material comprising the Sample (e.g. Plasma, White blood cells, Red blood cells, DNA, RNA, Peripheral blood mononuclear cells, CD4+ Tconv cells, NK cells, Monocytes, CD8+ T cells, B cells, Granulocytes, Treg cells) title: Sample Type from_schema: https://w3id.org/include rank: 1000 alias: sampleType domain_of: - Biospecimen range: string required: true","title":"LinkML Source"},{"location":"sex/","text":"Slot: Sex (sex) Sex of Participant URI: include:sex Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: EnumSex Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: sex definition_uri: include:sex description: Sex of Participant title: Sex from_schema: https://w3id.org/include rank: 1000 alias: sex domain_of: - Participant range: enum_sex required: true","title":"Slot: Sex (sex)"},{"location":"sex/#slot-sex-sex","text":"Sex of Participant URI: include:sex","title":"Slot: Sex (sex)"},{"location":"sex/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"sex/#properties","text":"Range: EnumSex Required: True","title":"Properties"},{"location":"sex/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"sex/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"sex/#linkml-source","text":"name: sex definition_uri: include:sex description: Sex of Participant title: Sex from_schema: https://w3id.org/include rank: 1000 alias: sex domain_of: - Participant range: enum_sex required: true","title":"LinkML Source"},{"location":"siblingId/","text":"Slot: Sibling ID (siblingId) Participant External ID for Participant's sibling(s) (NA if Participant is not the proband) URI: include:siblingId Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: siblingId definition_uri: include:siblingId description: Participant External ID for Participant's sibling(s) (NA if Participant is not the proband) title: Sibling ID from_schema: https://w3id.org/include rank: 1000 alias: siblingId domain_of: - Participant range: string","title":"Slot: Sibling ID (siblingId)"},{"location":"siblingId/#slot-sibling-id-siblingid","text":"Participant External ID for Participant's sibling(s) (NA if Participant is not the proband) URI: include:siblingId","title":"Slot: Sibling ID (siblingId)"},{"location":"siblingId/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"siblingId/#properties","text":"Range: String","title":"Properties"},{"location":"siblingId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"siblingId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"siblingId/#linkml-source","text":"name: siblingId definition_uri: include:siblingId description: Participant External ID for Participant's sibling(s) (NA if Participant is not the proband) title: Sibling ID from_schema: https://w3id.org/include rank: 1000 alias: siblingId domain_of: - Participant range: string","title":"LinkML Source"},{"location":"studyCode/","text":"Slot: Study Code (studyCode) Unique identifer for the study, assigned by DCC URI: include:studyCode Applicable Classes Name Description Modifies Slot Study General information about the study no Properties Range: EnumStudyCode Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: studyCode definition_uri: include:studyCode description: Unique identifer for the study, assigned by DCC title: Study Code from_schema: https://w3id.org/include rank: 1000 alias: studyCode domain_of: - Study range: enum_studyCode required: true","title":"Slot: Study Code (studyCode)"},{"location":"studyCode/#slot-study-code-studycode","text":"Unique identifer for the study, assigned by DCC URI: include:studyCode","title":"Slot: Study Code (studyCode)"},{"location":"studyCode/#applicable-classes","text":"Name Description Modifies Slot Study General information about the study no","title":"Applicable Classes"},{"location":"studyCode/#properties","text":"Range: EnumStudyCode Required: True","title":"Properties"},{"location":"studyCode/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"studyCode/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"studyCode/#linkml-source","text":"name: studyCode definition_uri: include:studyCode description: Unique identifer for the study, assigned by DCC title: Study Code from_schema: https://w3id.org/include rank: 1000 alias: studyCode domain_of: - Study range: enum_studyCode required: true","title":"LinkML Source"},{"location":"studyName/","text":"Slot: Study Name (studyName) Full name of the study, chosen by data contributor URI: include:studyName Applicable Classes Name Description Modifies Slot Study General information about the study no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: studyName definition_uri: include:studyName description: Full name of the study, chosen by data contributor title: Study Name from_schema: https://w3id.org/include rank: 1000 alias: studyName domain_of: - Study range: string required: true","title":"Slot: Study Name (studyName)"},{"location":"studyName/#slot-study-name-studyname","text":"Full name of the study, chosen by data contributor URI: include:studyName","title":"Slot: Study Name (studyName)"},{"location":"studyName/#applicable-classes","text":"Name Description Modifies Slot Study General information about the study no","title":"Applicable Classes"},{"location":"studyName/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"studyName/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"studyName/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"studyName/#linkml-source","text":"name: studyName definition_uri: include:studyName 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hasStudy - hasParticipant - sampleGlobalId - sampleExternalId - sampleType - ageAtBiospecimenCollection - parentSampleGlobalId - parentSampleExternalId - parentSampleType - collectionGlobalId - collectionExternalId - collectionSampleType - containerGlobalId - containerExternalId - volume - volumeUnit - concentration - concentrationUnit - laboratoryProcedure - biospecimenStorage - sampleAvailability - containerAvailability Induced name: Biospecimen definition_uri: include:Biospecimen annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,Participant,DataFile description: A Biospecimen Collected from A Participant title: Biospecimen from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: Biospecimen domain_of: - Biospecimen - DataFile - Dataset - Participant - Condition range: Study hasParticipant: name: hasParticipant definition_uri: include:hasParticipant description: Link to a Participant title: Has Participant from_schema: https://w3id.org/include rank: 1000 alias: hasParticipant owner: Biospecimen domain_of: - Biospecimen - DataFile - Condition range: Participant sampleGlobalId: name: sampleGlobalId definition_uri: include:sampleGlobalId description: INCLUDE global identifier for sample, assigned by DCC title: Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: sampleGlobalId owner: Biospecimen domain_of: - Biospecimen range: string required: true sampleExternalId: name: sampleExternalId definition_uri: include:sampleExternalId description: Unique identifier for sample, assigned by data contributor. A sample is a unique biological material; two samples with two different IDs are biologically distinct. title: Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: sampleExternalId owner: Biospecimen domain_of: - Biospecimen range: string required: true sampleType: name: sampleType definition_uri: include:sampleType description: Type of biological material comprising the Sample (e.g. Plasma, White blood cells, Red blood cells, DNA, RNA, Peripheral blood mononuclear cells, CD4+ Tconv cells, NK cells, Monocytes, CD8+ T cells, B cells, Granulocytes, Treg cells) title: Sample Type from_schema: https://w3id.org/include rank: 1000 alias: sampleType owner: Biospecimen domain_of: - Biospecimen range: string required: true ageAtBiospecimenCollection: name: ageAtBiospecimenCollection definition_uri: include:ageAtBiospecimenCollection description: Age in days of participant at time of biospecimen collection title: Age At Biospecimen Collection from_schema: https://w3id.org/include rank: 1000 alias: ageAtBiospecimenCollection owner: Biospecimen domain_of: - Biospecimen range: integer parentSampleGlobalId: name: parentSampleGlobalId definition_uri: include:parentSampleGlobalId description: INCLUDE global identifier for the direct parent from which Sample was derived, assigned by DCC title: Parent Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleGlobalId owner: Biospecimen domain_of: - Biospecimen range: string parentSampleExternalId: name: parentSampleExternalId definition_uri: include:parentSampleExternalId description: Identifier for the direct parent from which Sample was derived, processed, pooled, etc. (if applicable); assigned by data contributor title: Parent Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleExternalId owner: Biospecimen domain_of: - Biospecimen range: string parentSampleType: name: parentSampleType definition_uri: include:parentSampleType description: Type of biological material comprising the Parent Sample (e.g. Peripheral Whole Blood, Derived Cell Line, Saliva, Whole blood, WBCs) title: Parent Sample Type from_schema: https://w3id.org/include rank: 1000 alias: parentSampleType owner: Biospecimen domain_of: - Biospecimen range: string collectionGlobalId: name: collectionGlobalId definition_uri: include:collectionGlobalId description: INCLUDE global identifier for the eldest sample in a lineage, assigned by DCC title: Collection Global ID from_schema: https://w3id.org/include rank: 1000 alias: collectionGlobalId owner: Biospecimen domain_of: - Biospecimen range: string collectionExternalId: name: collectionExternalId definition_uri: include:collectionExternalId description: Identifier for the eldest sample in a lineage of processed, pooled, or aliquoted samples - typically the material actually collected from the Participant. This may be the same as Parent Sample ID or Sample ID (if no processing was performed). Assigned by data contributor. title: Collection External ID from_schema: https://w3id.org/include rank: 1000 alias: collectionExternalId owner: Biospecimen domain_of: - Biospecimen range: string collectionSampleType: name: collectionSampleType definition_uri: include:collectionSampleType description: Type of biological material comprising the Collected Sample (e.g. Whole blood, Not reported, Saliva, Derived cell line) title: Collection Sample Type from_schema: https://w3id.org/include rank: 1000 alias: collectionSampleType owner: Biospecimen domain_of: - Biospecimen range: string containerGlobalId: name: containerGlobalId definition_uri: include:containerGlobalId description: INCLUDE global identifier for specific container/aliquot of sample, assigned by DCC title: Container Global ID from_schema: https://w3id.org/include rank: 1000 alias: containerGlobalId owner: Biospecimen domain_of: - Biospecimen range: string containerExternalId: name: containerExternalId definition_uri: include:containerExternalId description: Identifier for specific container/aliquot of sample, assigned by data contributor. For example, distinct aliquots of a sample will have the same Sample ID but different Container IDs. title: Container External ID from_schema: https://w3id.org/include rank: 1000 alias: containerExternalId owner: Biospecimen domain_of: - Biospecimen range: string volume: name: volume definition_uri: include:volume description: Amount of sample in container title: Volume from_schema: https://w3id.org/include rank: 1000 alias: volume owner: Biospecimen domain_of: - Biospecimen range: float volumeUnit: name: volumeUnit definition_uri: include:volumeUnit description: Unit of sample volume title: Volume Unit from_schema: https://w3id.org/include rank: 1000 alias: volumeUnit owner: Biospecimen domain_of: - Biospecimen range: string concentration: name: concentration definition_uri: include:concentration description: Concentration of sample in container title: Concentration from_schema: https://w3id.org/include rank: 1000 alias: concentration owner: Biospecimen domain_of: - Biospecimen range: float concentrationUnit: name: concentrationUnit definition_uri: include:concentrationUnit description: Unit of sample concentration title: Concentration Unit from_schema: https://w3id.org/include rank: 1000 alias: concentrationUnit owner: Biospecimen domain_of: - Biospecimen range: string laboratoryProcedure: name: laboratoryProcedure definition_uri: include:laboratoryProcedure description: Procedure by which Sample was derived from Parent Sample (e.g. Centrifugation, RBC lysis, Lyse/fix buffer, FACS, PAXgene DNA, PAXgene RNA, Qiagen Allprep, Ficoll) title: Laboratory Procedure from_schema: https://w3id.org/include rank: 1000 alias: laboratoryProcedure owner: Biospecimen domain_of: - Biospecimen range: string biospecimenStorage: name: biospecimenStorage definition_uri: include:biospecimenStorage description: Method by which Container is stored (e.g. Minus 80 degrees Celsius, Liquid nitrogen storage) title: Biospecimen Storage from_schema: https://w3id.org/include rank: 1000 alias: biospecimenStorage owner: Biospecimen domain_of: - Biospecimen range: string sampleAvailability: name: sampleAvailability definition_uri: include:sampleAvailability description: Whether or not the sample is potentially available for sharing through the Virtual Biorepository title: Sample Availability from_schema: https://w3id.org/include rank: 1000 alias: sampleAvailability owner: Biospecimen domain_of: - Biospecimen range: enum_sampleAvailability required: true containerAvailability: name: containerAvailability definition_uri: include:containerAvailability description: Whether or not the container is potentially available for sharing through the Virtual Biorepository title: Container Availability from_schema: https://w3id.org/include rank: 1000 alias: containerAvailability owner: Biospecimen domain_of: - Biospecimen range: enum_containerAvailability","title":"Class: Biospecimen (Biospecimen)"},{"location":"Biospecimen/#class-biospecimen-biospecimen","text":"A Biospecimen Collected from A Participant URI: include:Biospecimen classDiagram class Biospecimen Thing <|-- Biospecimen Biospecimen : ageAtBiospecimenCollection Biospecimen : biospecimenStorage Biospecimen : collectionExternalId Biospecimen : collectionGlobalId Biospecimen : collectionSampleType Biospecimen : concentration Biospecimen : concentrationUnit Biospecimen : containerAvailability Biospecimen --> enum_containerAvailability : containerAvailability Biospecimen : containerExternalId Biospecimen : containerGlobalId Biospecimen : hasParticipant Biospecimen --> Participant : hasParticipant Biospecimen : hasStudy Biospecimen --> Study : hasStudy Biospecimen : laboratoryProcedure Biospecimen : parentSampleExternalId Biospecimen : parentSampleGlobalId Biospecimen : parentSampleType Biospecimen : sampleAvailability Biospecimen --> enum_sampleAvailability : sampleAvailability Biospecimen : sampleExternalId Biospecimen : sampleGlobalId Biospecimen : sampleType Biospecimen : volume Biospecimen : volumeUnit","title":"Class: Biospecimen (Biospecimen)"},{"location":"Biospecimen/#inheritance","text":"Thing Biospecimen","title":"Inheritance"},{"location":"Biospecimen/#slots","text":"Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct hasParticipant 0..1 Participant Link to a Participant direct sampleGlobalId 1..1 String INCLUDE global identifier for sample, assigned by DCC direct sampleExternalId 1..1 String Unique identifier for sample, assigned by data contributor direct sampleType 1..1 String Type of biological material comprising the Sample (e direct ageAtBiospecimenCollection 0..1 Integer Age in days of participant at time of biospecimen collection direct parentSampleGlobalId 0..1 String INCLUDE global identifier for the direct parent from which Sample was derived... direct parentSampleExternalId 0..1 String Identifier for the direct parent from which Sample was derived, processed, po... direct parentSampleType 0..1 String Type of biological material comprising the Parent Sample (e direct collectionGlobalId 0..1 String INCLUDE global identifier for the eldest sample in a lineage, assigned by DCC direct collectionExternalId 0..1 String Identifier for the eldest sample in a lineage of processed, pooled, or aliquo... direct collectionSampleType 0..1 String Type of biological material comprising the Collected Sample (e direct containerGlobalId 0..1 String INCLUDE global identifier for specific container/aliquot of sample, assigned ... direct containerExternalId 0..1 String Identifier for specific container/aliquot of sample, assigned by data contrib... direct volume 0..1 Float Amount of sample in container direct volumeUnit 0..1 String Unit of sample volume direct concentration 0..1 Float Concentration of sample in container direct concentrationUnit 0..1 String Unit of sample concentration direct laboratoryProcedure 0..1 String Procedure by which Sample was derived from Parent Sample (e direct biospecimenStorage 0..1 String Method by which Container is stored (e direct sampleAvailability 1..1 EnumSampleAvailability Whether or not the sample is potentially available for sharing through the Vi... direct containerAvailability 0..1 EnumContainerAvailability Whether or not the container is potentially available for sharing through the... direct","title":"Slots"},{"location":"Biospecimen/#usages","text":"used by used in type used DataFile hasBiospecimen range Biospecimen","title":"Usages"},{"location":"Biospecimen/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Biospecimen/#annotations","text":"property value required True","title":"Annotations"},{"location":"Biospecimen/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Biospecimen/#mappings","text":"Mapping Type Mapped Value self include:Biospecimen native include:Biospecimen","title":"Mappings"},{"location":"Biospecimen/#linkml-source","text":"","title":"LinkML Source"},{"location":"Biospecimen/#direct","text":"name: Biospecimen definition_uri: include:Biospecimen annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,Participant,DataFile description: A Biospecimen Collected from A Participant title: Biospecimen from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - hasParticipant - sampleGlobalId - sampleExternalId - sampleType - ageAtBiospecimenCollection - parentSampleGlobalId - parentSampleExternalId - parentSampleType - collectionGlobalId - collectionExternalId - collectionSampleType - containerGlobalId - containerExternalId - volume - volumeUnit - concentration - concentrationUnit - laboratoryProcedure - biospecimenStorage - sampleAvailability - containerAvailability","title":"Direct"},{"location":"Biospecimen/#induced","text":"name: Biospecimen definition_uri: include:Biospecimen annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,Participant,DataFile description: A Biospecimen Collected from A Participant title: Biospecimen from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: Biospecimen domain_of: - Biospecimen - DataFile - Dataset - Participant - Condition range: Study hasParticipant: name: hasParticipant definition_uri: include:hasParticipant description: Link to a Participant title: Has Participant from_schema: https://w3id.org/include rank: 1000 alias: hasParticipant owner: Biospecimen domain_of: - Biospecimen - DataFile - Condition range: Participant sampleGlobalId: name: sampleGlobalId definition_uri: include:sampleGlobalId description: INCLUDE global identifier for sample, assigned by DCC title: Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: sampleGlobalId owner: Biospecimen domain_of: - Biospecimen range: string required: true sampleExternalId: name: sampleExternalId definition_uri: include:sampleExternalId description: Unique identifier for sample, assigned by data contributor. A sample is a unique biological material; two samples with two different IDs are biologically distinct. title: Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: sampleExternalId owner: Biospecimen domain_of: - Biospecimen range: string required: true sampleType: name: sampleType definition_uri: include:sampleType description: Type of biological material comprising the Sample (e.g. Plasma, White blood cells, Red blood cells, DNA, RNA, Peripheral blood mononuclear cells, CD4+ Tconv cells, NK cells, Monocytes, CD8+ T cells, B cells, Granulocytes, Treg cells) title: Sample Type from_schema: https://w3id.org/include rank: 1000 alias: sampleType owner: Biospecimen domain_of: - Biospecimen range: string required: true ageAtBiospecimenCollection: name: ageAtBiospecimenCollection definition_uri: include:ageAtBiospecimenCollection description: Age in days of participant at time of biospecimen collection title: Age At Biospecimen Collection from_schema: https://w3id.org/include rank: 1000 alias: ageAtBiospecimenCollection owner: Biospecimen domain_of: - Biospecimen range: integer parentSampleGlobalId: name: parentSampleGlobalId definition_uri: include:parentSampleGlobalId description: INCLUDE global identifier for the direct parent from which Sample was derived, assigned by DCC title: Parent Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleGlobalId owner: Biospecimen domain_of: - Biospecimen range: string parentSampleExternalId: name: parentSampleExternalId definition_uri: include:parentSampleExternalId description: Identifier for the direct parent from which Sample was derived, processed, pooled, etc. (if applicable); assigned by data contributor title: Parent Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleExternalId owner: Biospecimen domain_of: - Biospecimen range: string parentSampleType: name: parentSampleType definition_uri: include:parentSampleType description: Type of biological material comprising the Parent Sample (e.g. Peripheral Whole Blood, Derived Cell Line, Saliva, Whole blood, WBCs) title: Parent Sample Type from_schema: https://w3id.org/include rank: 1000 alias: parentSampleType owner: Biospecimen domain_of: - Biospecimen range: string collectionGlobalId: name: collectionGlobalId definition_uri: include:collectionGlobalId description: INCLUDE global identifier for the eldest sample in a lineage, assigned by DCC title: Collection Global ID from_schema: https://w3id.org/include rank: 1000 alias: collectionGlobalId owner: Biospecimen domain_of: - Biospecimen range: string collectionExternalId: name: collectionExternalId definition_uri: include:collectionExternalId description: Identifier for the eldest sample in a lineage of processed, pooled, or aliquoted samples - typically the material actually collected from the Participant. This may be the same as Parent Sample ID or Sample ID (if no processing was performed). Assigned by data contributor. title: Collection External ID from_schema: https://w3id.org/include rank: 1000 alias: collectionExternalId owner: Biospecimen domain_of: - Biospecimen range: string collectionSampleType: name: collectionSampleType definition_uri: include:collectionSampleType description: Type of biological material comprising the Collected Sample (e.g. Whole blood, Not reported, Saliva, Derived cell line) title: Collection Sample Type from_schema: https://w3id.org/include rank: 1000 alias: collectionSampleType owner: Biospecimen domain_of: - Biospecimen range: string containerGlobalId: name: containerGlobalId definition_uri: include:containerGlobalId description: INCLUDE global identifier for specific container/aliquot of sample, assigned by DCC title: Container Global ID from_schema: https://w3id.org/include rank: 1000 alias: containerGlobalId owner: Biospecimen domain_of: - Biospecimen range: string containerExternalId: name: containerExternalId definition_uri: include:containerExternalId description: Identifier for specific container/aliquot of sample, assigned by data contributor. For example, distinct aliquots of a sample will have the same Sample ID but different Container IDs. title: Container External ID from_schema: https://w3id.org/include rank: 1000 alias: containerExternalId owner: Biospecimen domain_of: - Biospecimen range: string volume: name: volume definition_uri: include:volume description: Amount of sample in container title: Volume from_schema: https://w3id.org/include rank: 1000 alias: volume owner: Biospecimen domain_of: - Biospecimen range: float volumeUnit: name: volumeUnit definition_uri: include:volumeUnit description: Unit of sample volume title: Volume Unit from_schema: https://w3id.org/include rank: 1000 alias: volumeUnit owner: Biospecimen domain_of: - Biospecimen range: string concentration: name: concentration definition_uri: include:concentration description: Concentration of sample in container title: Concentration from_schema: https://w3id.org/include rank: 1000 alias: concentration owner: Biospecimen domain_of: - Biospecimen range: float concentrationUnit: name: concentrationUnit definition_uri: include:concentrationUnit description: Unit of sample concentration title: Concentration Unit from_schema: https://w3id.org/include rank: 1000 alias: concentrationUnit owner: Biospecimen domain_of: - Biospecimen range: string laboratoryProcedure: name: laboratoryProcedure definition_uri: include:laboratoryProcedure description: Procedure by which Sample was derived from Parent Sample (e.g. Centrifugation, RBC lysis, Lyse/fix buffer, FACS, PAXgene DNA, PAXgene RNA, Qiagen Allprep, Ficoll) title: Laboratory Procedure from_schema: https://w3id.org/include rank: 1000 alias: laboratoryProcedure owner: Biospecimen domain_of: - Biospecimen range: string biospecimenStorage: name: biospecimenStorage definition_uri: include:biospecimenStorage description: Method by which Container is stored (e.g. Minus 80 degrees Celsius, Liquid nitrogen storage) title: Biospecimen Storage from_schema: https://w3id.org/include rank: 1000 alias: biospecimenStorage owner: Biospecimen domain_of: - Biospecimen range: string sampleAvailability: name: sampleAvailability definition_uri: include:sampleAvailability description: Whether or not the sample is potentially available for sharing through the Virtual Biorepository title: Sample Availability from_schema: https://w3id.org/include rank: 1000 alias: sampleAvailability owner: Biospecimen domain_of: - Biospecimen range: enum_sampleAvailability required: true containerAvailability: name: containerAvailability definition_uri: include:containerAvailability description: Whether or not the container is potentially available for sharing through the Virtual Biorepository title: Container Availability from_schema: https://w3id.org/include rank: 1000 alias: containerAvailability owner: Biospecimen domain_of: - Biospecimen range: enum_containerAvailability","title":"Induced"},{"location":"Boolean/","text":"Type: Boolean A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Boolean"},{"location":"Boolean/#type-boolean","text":"A binary (true or false) value URI: xsd:boolean base : Bool uri : xsd:boolean repr : bool","title":"Type: Boolean"},{"location":"Boolean/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Boolean/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Condition/","text":"Class: Condition (Condition) Co-occurring conditions and other observations for the participant URI: include:Condition classDiagram class Condition Thing <|-- Condition Condition : ageAtConditionMeasureObservation Condition : conditionDataSource Condition --> enum_conditionDataSource : conditionDataSource Condition : conditionInterpretation Condition --> enum_conditionInterpretation : conditionInterpretation Condition : conditionMeasureSourceText Condition --> None : conditionMeasureSourceText Condition : conditionStatus Condition --> enum_conditionStatus : conditionStatus Condition : eventId Condition --> None : eventId Condition : eventType Condition --> None : eventType Condition : hasParticipant Condition --> Participant : hasParticipant Condition : hasStudy Condition --> Study : hasStudy Condition : hpoCode Condition : hpoLabel Condition : maxoCode Condition : maxoLabel Condition : measureUnit Condition : measureValue Condition : mondoCode Condition : mondoLabel Condition : otherCode Condition : otherLabel Inheritance Thing Condition Slots Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct hasParticipant 0..1 Participant Link to a Participant direct eventId 0..1 String Identifier for event (Visit, Survey completion, Sample collection, etc direct eventType 0..1 String Type of event for which Event ID is given (Visit, Survey completion, Sample c... direct conditionMeasureSourceText 0..1 String Co-occurring Condition (phenotype or diagnosis) or Measure (observation with ... direct ageAtConditionMeasureObservation 0..1 Integer Age in days at which Condition or Measure was observed, recorded, or diagnose... direct conditionInterpretation 0..1 EnumConditionInterpretation Whether Condition was observed or not direct conditionStatus 0..1 EnumConditionStatus Whether the Condition is ongoing, has been resolved, or this is a general his... direct conditionDataSource 0..1 EnumConditionDataSource Whether Condition information was obtained by the investigator or reported by... direct hpoLabel 0..1 String Label for Condition in the Human Phenotype Ontology (HPO) direct hpoCode 0..1 String Code for Condition in the Human Phenotype Ontology (HPO) direct mondoLabel 0..1 String Label for Condition in the Mondo Disease Ontology (MONDO) direct mondoCode 0..1 String Code for Condition in the Mondo Disease Ontology (Mondo) direct maxoLabel 0..1 String Label for Condition in the Medical Action Ontology (MAXO) direct maxoCode 0..1 String Code for condition in the Medical Action Ontology (MAXO) direct otherLabel 0..1 String Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) direct otherCode 0..1 String Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) direct measureValue 0..1 Integer Numeric value of Measure direct measureUnit 0..1 String Unit that is associated with Measure Value (e direct Identifier and Mapping Information Annotations property value required False Schema Source from schema: https://w3id.org/include Mappings Mapping Type Mapped Value self include:Condition native include:Condition LinkML Source Direct name: Condition definition_uri: include:Condition annotations: required: tag: required value: 'False' description: Co-occurring conditions and other observations for the participant title: Condition from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - hasParticipant - eventId - eventType - conditionMeasureSourceText - ageAtConditionMeasureObservation - conditionInterpretation - conditionStatus - conditionDataSource - hpoLabel - hpoCode - mondoLabel - mondoCode - maxoLabel - maxoCode - otherLabel - otherCode - measureValue - measureUnit Induced name: Condition definition_uri: include:Condition annotations: required: tag: required value: 'False' description: Co-occurring conditions and other observations for the participant title: Condition from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: Condition domain_of: - Biospecimen - DataFile - Dataset - Participant - Condition range: Study hasParticipant: name: hasParticipant definition_uri: include:hasParticipant description: Link to a Participant title: Has Participant from_schema: https://w3id.org/include rank: 1000 alias: hasParticipant owner: Condition domain_of: - Biospecimen - DataFile - Condition range: Participant eventId: name: eventId definition_uri: include:eventId description: Identifier for event (Visit, Survey completion, Sample collection, etc.) to which the Condition data are linked, if applicable. There may be multiple events linked to a Participant. title: Event ID from_schema: https://w3id.org/include rank: 1000 alias: eventId owner: Condition domain_of: - Condition eventType: name: eventType definition_uri: include:eventType description: Type of event for which Event ID is given (Visit, Survey completion, Sample collection, etc.) title: Event Type from_schema: https://w3id.org/include rank: 1000 alias: eventType owner: Condition domain_of: - Condition conditionMeasureSourceText: name: conditionMeasureSourceText definition_uri: include:conditionMeasureSourceText description: Co-occurring Condition (phenotype or diagnosis) or Measure (observation with numeric value), as described by data contributor. The Down Syndrome Genetic Diagnosis will be rolled into this field. title: Condition or Measure Source Text from_schema: https://w3id.org/include rank: 1000 alias: conditionMeasureSourceText owner: Condition domain_of: - Condition ageAtConditionMeasureObservation: name: ageAtConditionMeasureObservation definition_uri: include:ageAtConditionMeasureObservation description: Age in days at which Condition or Measure was observed, recorded, or diagnosed title: Age At Condition or Measure Observation from_schema: https://w3id.org/include rank: 1000 alias: ageAtConditionMeasureObservation owner: Condition domain_of: - Condition range: integer conditionInterpretation: name: conditionInterpretation definition_uri: include:conditionInterpretation description: Whether Condition was observed or not title: Condition Interpretation from_schema: https://w3id.org/include rank: 1000 alias: conditionInterpretation owner: Condition domain_of: - Condition range: enum_conditionInterpretation conditionStatus: name: conditionStatus definition_uri: include:conditionStatus description: Whether the Condition is ongoing, has been resolved, or this is a general history of the condition without known dates title: Condition Status from_schema: https://w3id.org/include rank: 1000 alias: conditionStatus owner: Condition domain_of: - Condition range: enum_conditionStatus conditionDataSource: name: conditionDataSource definition_uri: include:conditionDataSource description: Whether Condition information was obtained by the investigator or reported by participant/family member title: Condition Data Source from_schema: https://w3id.org/include rank: 1000 alias: conditionDataSource owner: Condition domain_of: - Condition range: enum_conditionDataSource hpoLabel: name: hpoLabel definition_uri: include:hpoLabel description: Label for Condition in the Human Phenotype Ontology (HPO) title: HPO Label from_schema: https://w3id.org/include rank: 1000 alias: hpoLabel owner: Condition domain_of: - Condition range: string hpoCode: name: hpoCode definition_uri: include:hpoCode description: Code for Condition in the Human Phenotype Ontology (HPO) title: HPO Code from_schema: https://w3id.org/include rank: 1000 alias: hpoCode owner: Condition domain_of: - Condition range: string mondoLabel: name: mondoLabel definition_uri: include:mondoLabel description: Label for Condition in the Mondo Disease Ontology (MONDO) title: MONDO Label from_schema: https://w3id.org/include rank: 1000 alias: mondoLabel owner: Condition domain_of: - Condition range: string mondoCode: name: mondoCode definition_uri: include:mondoCode description: Code for Condition in the Mondo Disease Ontology (Mondo) title: MONDO Code from_schema: https://w3id.org/include rank: 1000 alias: mondoCode owner: Condition domain_of: - Condition range: string maxoLabel: name: maxoLabel definition_uri: include:maxoLabel description: Label for Condition in the Medical Action Ontology (MAXO) title: MAXO Label from_schema: https://w3id.org/include rank: 1000 alias: maxoLabel owner: Condition domain_of: - Condition range: string maxoCode: name: maxoCode definition_uri: include:maxoCode description: Code for condition in the Medical Action Ontology (MAXO) title: MAXO Code from_schema: https://w3id.org/include rank: 1000 alias: maxoCode owner: Condition domain_of: - Condition range: string otherLabel: name: otherLabel definition_uri: include:otherLabel description: Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Label from_schema: https://w3id.org/include rank: 1000 alias: otherLabel owner: Condition domain_of: - Condition range: string otherCode: name: otherCode definition_uri: include:otherCode description: Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Code from_schema: https://w3id.org/include rank: 1000 alias: otherCode owner: Condition domain_of: - Condition range: string measureValue: name: measureValue definition_uri: include:measureValue description: Numeric value of Measure title: Measure Value from_schema: https://w3id.org/include rank: 1000 alias: measureValue owner: Condition domain_of: - Condition range: integer measureUnit: name: measureUnit definition_uri: include:measureUnit description: Unit that is associated with Measure Value (e.g. kg, cm, %, x10^9/L, etc.) title: Measure Unit from_schema: https://w3id.org/include rank: 1000 alias: measureUnit owner: Condition domain_of: - Condition range: string","title":"Class: Condition (Condition)"},{"location":"Condition/#class-condition-condition","text":"Co-occurring conditions and other observations for the participant URI: include:Condition classDiagram class Condition Thing <|-- Condition Condition : ageAtConditionMeasureObservation Condition : conditionDataSource Condition --> enum_conditionDataSource : conditionDataSource Condition : conditionInterpretation Condition --> enum_conditionInterpretation : conditionInterpretation Condition : conditionMeasureSourceText Condition --> None : conditionMeasureSourceText Condition : conditionStatus Condition --> enum_conditionStatus : conditionStatus Condition : eventId Condition --> None : eventId Condition : eventType Condition --> None : eventType Condition : hasParticipant Condition --> Participant : hasParticipant Condition : hasStudy Condition --> Study : hasStudy Condition : hpoCode Condition : hpoLabel Condition : maxoCode Condition : maxoLabel Condition : measureUnit Condition : measureValue Condition : mondoCode Condition : mondoLabel Condition : otherCode Condition : otherLabel","title":"Class: Condition (Condition)"},{"location":"Condition/#inheritance","text":"Thing Condition","title":"Inheritance"},{"location":"Condition/#slots","text":"Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct hasParticipant 0..1 Participant Link to a Participant direct eventId 0..1 String Identifier for event (Visit, Survey completion, Sample collection, etc direct eventType 0..1 String Type of event for which Event ID is given (Visit, Survey completion, Sample c... direct conditionMeasureSourceText 0..1 String Co-occurring Condition (phenotype or diagnosis) or Measure (observation with ... direct ageAtConditionMeasureObservation 0..1 Integer Age in days at which Condition or Measure was observed, recorded, or diagnose... direct conditionInterpretation 0..1 EnumConditionInterpretation Whether Condition was observed or not direct conditionStatus 0..1 EnumConditionStatus Whether the Condition is ongoing, has been resolved, or this is a general his... direct conditionDataSource 0..1 EnumConditionDataSource Whether Condition information was obtained by the investigator or reported by... direct hpoLabel 0..1 String Label for Condition in the Human Phenotype Ontology (HPO) direct hpoCode 0..1 String Code for Condition in the Human Phenotype Ontology (HPO) direct mondoLabel 0..1 String Label for Condition in the Mondo Disease Ontology (MONDO) direct mondoCode 0..1 String Code for Condition in the Mondo Disease Ontology (Mondo) direct maxoLabel 0..1 String Label for Condition in the Medical Action Ontology (MAXO) direct maxoCode 0..1 String Code for condition in the Medical Action Ontology (MAXO) direct otherLabel 0..1 String Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) direct otherCode 0..1 String Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) direct measureValue 0..1 Integer Numeric value of Measure direct measureUnit 0..1 String Unit that is associated with Measure Value (e direct","title":"Slots"},{"location":"Condition/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Condition/#annotations","text":"property value required False","title":"Annotations"},{"location":"Condition/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Condition/#mappings","text":"Mapping Type Mapped Value self include:Condition native include:Condition","title":"Mappings"},{"location":"Condition/#linkml-source","text":"","title":"LinkML Source"},{"location":"Condition/#direct","text":"name: Condition definition_uri: include:Condition annotations: required: tag: required value: 'False' description: Co-occurring conditions and other observations for the participant title: Condition from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - hasParticipant - eventId - eventType - conditionMeasureSourceText - ageAtConditionMeasureObservation - conditionInterpretation - conditionStatus - conditionDataSource - hpoLabel - hpoCode - mondoLabel - mondoCode - maxoLabel - maxoCode - otherLabel - otherCode - measureValue - measureUnit","title":"Direct"},{"location":"Condition/#induced","text":"name: Condition definition_uri: include:Condition annotations: required: tag: required value: 'False' description: Co-occurring conditions and other observations for the participant title: Condition from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: Condition domain_of: - Biospecimen - DataFile - Dataset - Participant - Condition range: Study hasParticipant: name: hasParticipant definition_uri: include:hasParticipant description: Link to a Participant title: Has Participant from_schema: https://w3id.org/include rank: 1000 alias: hasParticipant owner: Condition domain_of: - Biospecimen - DataFile - Condition range: Participant eventId: name: eventId definition_uri: include:eventId description: Identifier for event (Visit, Survey completion, Sample collection, etc.) to which the Condition data are linked, if applicable. There may be multiple events linked to a Participant. title: Event ID from_schema: https://w3id.org/include rank: 1000 alias: eventId owner: Condition domain_of: - Condition eventType: name: eventType definition_uri: include:eventType description: Type of event for which Event ID is given (Visit, Survey completion, Sample collection, etc.) title: Event Type from_schema: https://w3id.org/include rank: 1000 alias: eventType owner: Condition domain_of: - Condition conditionMeasureSourceText: name: conditionMeasureSourceText definition_uri: include:conditionMeasureSourceText description: Co-occurring Condition (phenotype or diagnosis) or Measure (observation with numeric value), as described by data contributor. The Down Syndrome Genetic Diagnosis will be rolled into this field. title: Condition or Measure Source Text from_schema: https://w3id.org/include rank: 1000 alias: conditionMeasureSourceText owner: Condition domain_of: - Condition ageAtConditionMeasureObservation: name: ageAtConditionMeasureObservation definition_uri: include:ageAtConditionMeasureObservation description: Age in days at which Condition or Measure was observed, recorded, or diagnosed title: Age At Condition or Measure Observation from_schema: https://w3id.org/include rank: 1000 alias: ageAtConditionMeasureObservation owner: Condition domain_of: - Condition range: integer conditionInterpretation: name: conditionInterpretation definition_uri: include:conditionInterpretation description: Whether Condition was observed or not title: Condition Interpretation from_schema: https://w3id.org/include rank: 1000 alias: conditionInterpretation owner: Condition domain_of: - Condition range: enum_conditionInterpretation conditionStatus: name: conditionStatus definition_uri: include:conditionStatus description: Whether the Condition is ongoing, has been resolved, or this is a general history of the condition without known dates title: Condition Status from_schema: https://w3id.org/include rank: 1000 alias: conditionStatus owner: Condition domain_of: - Condition range: enum_conditionStatus conditionDataSource: name: conditionDataSource definition_uri: include:conditionDataSource description: Whether Condition information was obtained by the investigator or reported by participant/family member title: Condition Data Source from_schema: https://w3id.org/include rank: 1000 alias: conditionDataSource owner: Condition domain_of: - Condition range: enum_conditionDataSource hpoLabel: name: hpoLabel definition_uri: include:hpoLabel description: Label for Condition in the Human Phenotype Ontology (HPO) title: HPO Label from_schema: https://w3id.org/include rank: 1000 alias: hpoLabel owner: Condition domain_of: - Condition range: string hpoCode: name: hpoCode definition_uri: include:hpoCode description: Code for Condition in the Human Phenotype Ontology (HPO) title: HPO Code from_schema: https://w3id.org/include rank: 1000 alias: hpoCode owner: Condition domain_of: - Condition range: string mondoLabel: name: mondoLabel definition_uri: include:mondoLabel description: Label for Condition in the Mondo Disease Ontology (MONDO) title: MONDO Label from_schema: https://w3id.org/include rank: 1000 alias: mondoLabel owner: Condition domain_of: - Condition range: string mondoCode: name: mondoCode definition_uri: include:mondoCode description: Code for Condition in the Mondo Disease Ontology (Mondo) title: MONDO Code from_schema: https://w3id.org/include rank: 1000 alias: mondoCode owner: Condition domain_of: - Condition range: string maxoLabel: name: maxoLabel definition_uri: include:maxoLabel description: Label for Condition in the Medical Action Ontology (MAXO) title: MAXO Label from_schema: https://w3id.org/include rank: 1000 alias: maxoLabel owner: Condition domain_of: - Condition range: string maxoCode: name: maxoCode definition_uri: include:maxoCode description: Code for condition in the Medical Action Ontology (MAXO) title: MAXO Code from_schema: https://w3id.org/include rank: 1000 alias: maxoCode owner: Condition domain_of: - Condition range: string otherLabel: name: otherLabel definition_uri: include:otherLabel description: Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Label from_schema: https://w3id.org/include rank: 1000 alias: otherLabel owner: Condition domain_of: - Condition range: string otherCode: name: otherCode definition_uri: include:otherCode description: Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Code from_schema: https://w3id.org/include rank: 1000 alias: otherCode owner: Condition domain_of: - Condition range: string measureValue: name: measureValue definition_uri: include:measureValue description: Numeric value of Measure title: Measure Value from_schema: https://w3id.org/include rank: 1000 alias: measureValue owner: Condition domain_of: - Condition range: integer measureUnit: name: measureUnit definition_uri: include:measureUnit description: Unit that is associated with Measure Value (e.g. kg, cm, %, x10^9/L, etc.) title: Measure Unit from_schema: https://w3id.org/include rank: 1000 alias: measureUnit owner: Condition domain_of: - Condition range: string","title":"Induced"},{"location":"Curie/","text":"Type: Curie a compact URI URI: xsd:string base : Curie uri : xsd:string repr : str Comments in RDF serializations this MUST be expanded to a URI in non-RDF serializations MAY be serialized as the compact representation Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Curie"},{"location":"Curie/#type-curie","text":"a compact URI URI: xsd:string base : Curie uri : xsd:string repr : str","title":"Type: Curie"},{"location":"Curie/#comments","text":"in RDF serializations this MUST be expanded to a URI in non-RDF serializations MAY be serialized as the compact representation","title":"Comments"},{"location":"Curie/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Curie/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"DataFile/","text":"Class: Data File (DataFile) A DataFile Associated with a Participant or Study or Biospecimen URI: include:DataFile classDiagram class DataFile Thing <|-- DataFile DataFile : accessUrl DataFile : dataAccess DataFile --> enum_dataAccess : dataAccess DataFile : dataCategory DataFile --> enum_DataCategory : dataCategory DataFile : dataType DataFile : experimentalPlatform DataFile : experimentalStrategy DataFile : fileExternalId DataFile : fileFormat DataFile : fileGlobalId DataFile : fileHash DataFile : fileName DataFile : fileSize DataFile : fileSizeUnit DataFile : hasBiospecimen DataFile --> Biospecimen : hasBiospecimen DataFile : hasParticipant DataFile --> Participant : hasParticipant DataFile : hasStudy DataFile --> Study : hasStudy DataFile : publicationDoi Inheritance Thing DataFile Slots Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct hasParticipant 0..1 Participant Link to a Participant direct hasBiospecimen 0..1 Biospecimen Link to a Biospecimen direct fileGlobalId 1..1 String INCLUDE global file identifier, assigned by DCC direct fileExternalId 1..1 String Unique identifier for data file, assigned by data contributor direct fileName 1..1 String Name of file, assigned by data contributor direct fileHash 0..1 String md5 hash of this file for validation (if known) direct dataAccess 0..1 EnumDataAccess Type of access control on this file, determined by DCC direct dataCategory 1..1 EnumDataCategory General category of data in file (e direct dataType 0..1 String Specific type of data contained in file (e direct experimentalStrategy 0..1 String Experimental method used to obtain data in file (e direct experimentalPlatform 0..1 String Specific platform used to perform experiment (e direct fileFormat 1..1 String Format of file (e direct fileSize 0..1 Integer Size of file, if known (mainly important if large) direct fileSizeUnit 0..1 String Unit of file size direct accessUrl 0..1 Uriorcurie URL/URI to file repository location direct publicationDoi 0..1 String DOI of publication associated with this file, if published direct Identifier and Mapping Information Annotations property value required True Schema Source from schema: https://w3id.org/include Mappings Mapping Type Mapped Value self include:DataFile native include:DataFile LinkML Source Direct name: DataFile definition_uri: include:DataFile annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,Participant,Biospecimen description: A DataFile Associated with a Participant or Study or Biospecimen title: Data File from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - hasParticipant - hasBiospecimen - fileGlobalId - fileExternalId - fileName - fileHash - dataAccess - dataCategory - dataType - experimentalStrategy - experimentalPlatform - fileFormat - fileSize - fileSizeUnit - accessUrl - publicationDoi Induced name: DataFile definition_uri: include:DataFile annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,Participant,Biospecimen description: A DataFile Associated with a Participant or Study or Biospecimen title: Data File from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: DataFile domain_of: - Biospecimen - DataFile - Dataset - Participant - Condition range: Study hasParticipant: name: hasParticipant definition_uri: include:hasParticipant description: Link to a Participant title: Has Participant from_schema: https://w3id.org/include rank: 1000 alias: hasParticipant owner: DataFile domain_of: - Biospecimen - DataFile - Condition range: Participant hasBiospecimen: name: hasBiospecimen definition_uri: include:hasBiospecimen description: Link to a Biospecimen title: Has Biospecimen from_schema: https://w3id.org/include rank: 1000 alias: hasBiospecimen owner: DataFile domain_of: - DataFile range: Biospecimen fileGlobalId: name: fileGlobalId definition_uri: include:fileGlobalId description: INCLUDE global file identifier, assigned by DCC title: File Global ID from_schema: https://w3id.org/include rank: 1000 alias: fileGlobalId owner: DataFile domain_of: - DataFile range: string required: true fileExternalId: name: fileExternalId definition_uri: include:fileExternalId description: Unique identifier for data file, assigned by data contributor title: File External ID from_schema: https://w3id.org/include rank: 1000 alias: fileExternalId owner: DataFile domain_of: - DataFile range: string required: true fileName: name: fileName definition_uri: include:fileName description: Name of file, assigned by data contributor title: File Name from_schema: https://w3id.org/include rank: 1000 alias: fileName owner: DataFile domain_of: - DataFile range: string required: true fileHash: name: fileHash definition_uri: include:fileHash description: md5 hash of this file for validation (if known) title: File Hash from_schema: https://w3id.org/include rank: 1000 alias: fileHash owner: DataFile domain_of: - DataFile range: string dataAccess: name: dataAccess definition_uri: include:dataAccess description: Type of access control on this file, determined by DCC title: Data Access from_schema: https://w3id.org/include rank: 1000 alias: dataAccess owner: DataFile domain_of: - DataFile range: enum_dataAccess dataCategory: name: dataCategory definition_uri: include:dataCategory description: General category of data in file (e.g. Clinical, Genomics, Proteomics, Metabolomics, Immune profiling, Transcriptomics) title: Data Category from_schema: https://w3id.org/include rank: 1000 alias: dataCategory owner: DataFile domain_of: - DataFile range: enum_DataCategory required: true dataType: name: dataType definition_uri: include:dataType description: Specific type of data contained in file (e.g. Preprocessed metabolite relative abundance, Absolute protein concentration, Aligned reads, Simple nucleotide variations, GVCF, Gene expression quantifications, Gene fusions, Somatic copy number variations, Somatic structural variations) title: Data Type from_schema: https://w3id.org/include rank: 1000 alias: dataType owner: DataFile domain_of: - DataFile range: string experimentalStrategy: name: experimentalStrategy definition_uri: include:experimentalStrategy description: Experimental method used to obtain data in file (e.g. Whole genome sequencing, RNAseq, Multiplex immunoassay, Mass spec metabolomics) title: Experimental Strategy from_schema: https://w3id.org/include rank: 1000 alias: experimentalStrategy owner: DataFile domain_of: - DataFile range: string experimentalPlatform: name: experimentalPlatform definition_uri: include:experimentalPlatform description: Specific platform used to perform experiment (e.g. SOMAscan, MSD, Luminex, Illumina) title: Experimental Platform from_schema: https://w3id.org/include rank: 1000 alias: experimentalPlatform owner: DataFile domain_of: - DataFile range: string fileFormat: name: fileFormat definition_uri: include:fileFormat description: Format of file (e.g. tsv, cram, gvcf, vcf, maf, txt, pdf, html, png) title: File Format from_schema: https://w3id.org/include rank: 1000 alias: fileFormat owner: DataFile domain_of: - DataFile range: string required: true fileSize: name: fileSize definition_uri: include:fileSize description: Size of file, if known (mainly important if large) title: File Size from_schema: https://w3id.org/include rank: 1000 alias: fileSize owner: DataFile domain_of: - DataFile range: integer fileSizeUnit: name: fileSizeUnit definition_uri: include:fileSizeUnit description: Unit of file size title: File Size Unit from_schema: https://w3id.org/include rank: 1000 alias: fileSizeUnit owner: DataFile domain_of: - DataFile range: string accessUrl: name: accessUrl definition_uri: include:accessUrl description: URL/URI to file repository location title: Access URL from_schema: https://w3id.org/include rank: 1000 alias: accessUrl owner: DataFile domain_of: - DataFile range: uriorcurie publicationDoi: name: publicationDoi definition_uri: include:publicationDoi description: DOI of publication associated with this file, if published title: Publication DOI from_schema: https://w3id.org/include rank: 1000 alias: publicationDoi owner: DataFile domain_of: - DataFile range: string","title":"Class: Data File (DataFile)"},{"location":"DataFile/#class-data-file-datafile","text":"A DataFile Associated with a Participant or Study or Biospecimen URI: include:DataFile classDiagram class DataFile Thing <|-- DataFile DataFile : accessUrl DataFile : dataAccess DataFile --> enum_dataAccess : dataAccess DataFile : dataCategory DataFile --> enum_DataCategory : dataCategory DataFile : dataType DataFile : experimentalPlatform DataFile : experimentalStrategy DataFile : fileExternalId DataFile : fileFormat DataFile : fileGlobalId DataFile : fileHash DataFile : fileName DataFile : fileSize DataFile : fileSizeUnit DataFile : hasBiospecimen DataFile --> Biospecimen : hasBiospecimen DataFile : hasParticipant DataFile --> Participant : hasParticipant DataFile : hasStudy DataFile --> Study : hasStudy DataFile : publicationDoi","title":"Class: Data File (DataFile)"},{"location":"DataFile/#inheritance","text":"Thing DataFile","title":"Inheritance"},{"location":"DataFile/#slots","text":"Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct hasParticipant 0..1 Participant Link to a Participant direct hasBiospecimen 0..1 Biospecimen Link to a Biospecimen direct fileGlobalId 1..1 String INCLUDE global file identifier, assigned by DCC direct fileExternalId 1..1 String Unique identifier for data file, assigned by data contributor direct fileName 1..1 String Name of file, assigned by data contributor direct fileHash 0..1 String md5 hash of this file for validation (if known) direct dataAccess 0..1 EnumDataAccess Type of access control on this file, determined by DCC direct dataCategory 1..1 EnumDataCategory General category of data in file (e direct dataType 0..1 String Specific type of data contained in file (e direct experimentalStrategy 0..1 String Experimental method used to obtain data in file (e direct experimentalPlatform 0..1 String Specific platform used to perform experiment (e direct fileFormat 1..1 String Format of file (e direct fileSize 0..1 Integer Size of file, if known (mainly important if large) direct fileSizeUnit 0..1 String Unit of file size direct accessUrl 0..1 Uriorcurie URL/URI to file repository location direct publicationDoi 0..1 String DOI of publication associated with this file, if published direct","title":"Slots"},{"location":"DataFile/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"DataFile/#annotations","text":"property value required True","title":"Annotations"},{"location":"DataFile/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"DataFile/#mappings","text":"Mapping Type Mapped Value self include:DataFile native include:DataFile","title":"Mappings"},{"location":"DataFile/#linkml-source","text":"","title":"LinkML Source"},{"location":"DataFile/#direct","text":"name: DataFile definition_uri: include:DataFile annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,Participant,Biospecimen description: A DataFile Associated with a Participant or Study or Biospecimen title: Data File from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - hasParticipant - hasBiospecimen - fileGlobalId - fileExternalId - fileName - fileHash - dataAccess - dataCategory - dataType - experimentalStrategy - experimentalPlatform - fileFormat - fileSize - fileSizeUnit - accessUrl - publicationDoi","title":"Direct"},{"location":"DataFile/#induced","text":"name: DataFile definition_uri: include:DataFile annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,Participant,Biospecimen description: A DataFile Associated with a Participant or Study or Biospecimen title: Data File from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: DataFile domain_of: - Biospecimen - DataFile - Dataset - Participant - Condition range: Study hasParticipant: name: hasParticipant definition_uri: include:hasParticipant description: Link to a Participant title: Has Participant from_schema: https://w3id.org/include rank: 1000 alias: hasParticipant owner: DataFile domain_of: - Biospecimen - DataFile - Condition range: Participant hasBiospecimen: name: hasBiospecimen definition_uri: include:hasBiospecimen description: Link to a Biospecimen title: Has Biospecimen from_schema: https://w3id.org/include rank: 1000 alias: hasBiospecimen owner: DataFile domain_of: - DataFile range: Biospecimen fileGlobalId: name: fileGlobalId definition_uri: include:fileGlobalId description: INCLUDE global file identifier, assigned by DCC title: File Global ID from_schema: https://w3id.org/include rank: 1000 alias: fileGlobalId owner: DataFile domain_of: - DataFile range: string required: true fileExternalId: name: fileExternalId definition_uri: include:fileExternalId description: Unique identifier for data file, assigned by data contributor title: File External ID from_schema: https://w3id.org/include rank: 1000 alias: fileExternalId owner: DataFile domain_of: - DataFile range: string required: true fileName: name: fileName definition_uri: include:fileName description: Name of file, assigned by data contributor title: File Name from_schema: https://w3id.org/include rank: 1000 alias: fileName owner: DataFile domain_of: - DataFile range: string required: true fileHash: name: fileHash definition_uri: include:fileHash description: md5 hash of this file for validation (if known) title: File Hash from_schema: https://w3id.org/include rank: 1000 alias: fileHash owner: DataFile domain_of: - DataFile range: string dataAccess: name: dataAccess definition_uri: include:dataAccess description: Type of access control on this file, determined by DCC title: Data Access from_schema: https://w3id.org/include rank: 1000 alias: dataAccess owner: DataFile domain_of: - DataFile range: enum_dataAccess dataCategory: name: dataCategory definition_uri: include:dataCategory description: General category of data in file (e.g. Clinical, Genomics, Proteomics, Metabolomics, Immune profiling, Transcriptomics) title: Data Category from_schema: https://w3id.org/include rank: 1000 alias: dataCategory owner: DataFile domain_of: - DataFile range: enum_DataCategory required: true dataType: name: dataType definition_uri: include:dataType description: Specific type of data contained in file (e.g. Preprocessed metabolite relative abundance, Absolute protein concentration, Aligned reads, Simple nucleotide variations, GVCF, Gene expression quantifications, Gene fusions, Somatic copy number variations, Somatic structural variations) title: Data Type from_schema: https://w3id.org/include rank: 1000 alias: dataType owner: DataFile domain_of: - 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family members title: Control-only duo: text: duo description: Proband + one parent title: Duo other: text: other description: Other family structure, e.g. one parent + twins title: Other proband_only: text: proband_only description: Proband only, no family members participating in study title: Proband-only trio: text: trio description: Proband + two parents title: Trio trio_plus: text: trio_plus description: Proband + two parents + other relatives title: Trio+","title":"Enum: EnumFamilyType"},{"location":"EnumFamilyType/#enum-enumfamilytype","text":"URI: EnumFamilyType","title":"Enum: EnumFamilyType"},{"location":"EnumFamilyType/#permissible-values","text":"Value Meaning Description control_only None Unrelated control, no Down syndrome family members duo None Proband + one parent other None Other family structure, e proband_only None Proband only, no family members participating in study trio None Proband + two parents trio_plus None Proband + two parents + other 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permissible_values: include: text: include title: INCLUDE kf: text: kf title: KF other: text: other title: Other","title":"Enum: EnumProgram"},{"location":"EnumProgram/#enum-enumprogram","text":"URI: EnumProgram","title":"Enum: EnumProgram"},{"location":"EnumProgram/#permissible-values","text":"Value Meaning Description include None kf None other None","title":"Permissible Values"},{"location":"EnumProgram/#slots","text":"Name Description program Funding source(s) for the study (pipe-separated if multiple)","title":"Slots"},{"location":"EnumProgram/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumProgram/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"EnumProgram/#linkml-source","text":"name: enum_program definition_uri: include:enum_program from_schema: https://w3id.org/include rank: 1000 permissible_values: include: text: include title: INCLUDE kf: text: kf title: KF other: text: other title: Other","title":"LinkML Source"},{"location":"EnumRace/","text":"Enum: EnumRace URI: EnumRace Permissible Values Value Meaning Description american_indian_or_alaskan_native NCIT:C41259 asian NCIT:C41260 black_or_african_american NCIT:C16352 more_than_one_race NCIT:C67109 native_hawaiian_or_other_pacific_islander NCIT:C41219 other NCIT:C17649 white NCIT:C41261 prefer_not_to_answer NCIT:C132222 unknown NCIT:C17998 east_asian NCIT:C161419 UK only; do not use for US data latin_american NCIT:C126531 UK only; do not use for US data middle_eastern_or_north_african NCIT:C43866 UK only; do not use for US data south_asian NCIT:C41263 UK only; do not use for US data Slots Name Description race Race of Participant Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: enum_race definition_uri: include:enum_race from_schema: https://w3id.org/include rank: 1000 permissible_values: american_indian_or_alaskan_native: text: american_indian_or_alaskan_native meaning: NCIT:C41259 title: American Indian or Alaska Native asian: text: asian meaning: NCIT:C41260 title: Asian black_or_african_american: text: black_or_african_american meaning: NCIT:C16352 title: Black or African American more_than_one_race: text: more_than_one_race meaning: NCIT:C67109 title: More than one race native_hawaiian_or_other_pacific_islander: text: native_hawaiian_or_other_pacific_islander meaning: NCIT:C41219 title: Native Hawaiian or Other Pacific Islander other: text: other meaning: NCIT:C17649 title: Other white: text: white meaning: NCIT:C41261 title: White prefer_not_to_answer: text: prefer_not_to_answer meaning: NCIT:C132222 title: Prefer not to answer unknown: text: unknown meaning: NCIT:C17998 title: Unknown east_asian: text: east_asian description: UK only; do not use for US data meaning: NCIT:C161419 title: East Asian latin_american: text: latin_american description: UK only; do not use for US data meaning: NCIT:C126531 title: Latin American middle_eastern_or_north_african: text: middle_eastern_or_north_african description: UK only; do not use for US data meaning: NCIT:C43866 title: Middle Eastern or North African south_asian: text: south_asian description: UK only; do not use for US data meaning: NCIT:C41263 title: South Asian","title":"Enum: EnumRace"},{"location":"EnumRace/#enum-enumrace","text":"URI: EnumRace","title":"Enum: EnumRace"},{"location":"EnumRace/#permissible-values","text":"Value Meaning Description american_indian_or_alaskan_native NCIT:C41259 asian NCIT:C41260 black_or_african_american NCIT:C16352 more_than_one_race NCIT:C67109 native_hawaiian_or_other_pacific_islander NCIT:C41219 other NCIT:C17649 white NCIT:C41261 prefer_not_to_answer NCIT:C132222 unknown NCIT:C17998 east_asian NCIT:C161419 UK only; do not use for US data latin_american NCIT:C126531 UK only; do not use for US data middle_eastern_or_north_african NCIT:C43866 UK only; do not use for US data south_asian NCIT:C41263 UK only; do not use for US data","title":"Permissible Values"},{"location":"EnumRace/#slots","text":"Name Description race Race of Participant","title":"Slots"},{"location":"EnumRace/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumRace/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"EnumRace/#linkml-source","text":"name: enum_race definition_uri: include:enum_race from_schema: https://w3id.org/include rank: 1000 permissible_values: american_indian_or_alaskan_native: text: american_indian_or_alaskan_native meaning: NCIT:C41259 title: American Indian or Alaska Native asian: text: asian meaning: NCIT:C41260 title: Asian black_or_african_american: text: black_or_african_american meaning: NCIT:C16352 title: Black or African American more_than_one_race: text: more_than_one_race meaning: NCIT:C67109 title: More than one race native_hawaiian_or_other_pacific_islander: text: native_hawaiian_or_other_pacific_islander meaning: NCIT:C41219 title: Native Hawaiian or Other Pacific Islander other: text: other meaning: NCIT:C17649 title: Other white: text: white meaning: NCIT:C41261 title: White prefer_not_to_answer: text: prefer_not_to_answer meaning: NCIT:C132222 title: Prefer not to answer unknown: text: unknown meaning: NCIT:C17998 title: Unknown east_asian: text: east_asian description: UK only; do not use for US data meaning: NCIT:C161419 title: East Asian latin_american: text: latin_american description: UK only; do not use for US data meaning: NCIT:C126531 title: Latin American middle_eastern_or_north_african: text: middle_eastern_or_north_african description: UK only; do not use for US data meaning: NCIT:C43866 title: Middle Eastern or North African south_asian: text: south_asian description: UK only; do not use for US data meaning: NCIT:C41263 title: South Asian","title":"LinkML Source"},{"location":"EnumResearchDomain/","text":"Enum: EnumResearchDomain URI: EnumResearchDomain Permissible Values Value Meaning Description behavior_and_behavior_mechanisms mesh:D001520 congenital_heart_defects mesh:D006330 immune_system_diseases mesh:D007154 hematologic_diseases mesh:D006402 sleep_wake_disorders mesh:D012893 all_co_occurring_conditions mesh:D013568 other None Slots Name Description researchDomain Main research domain(s) of the study, other than Down syndrome; pipe-separate... Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: enum_researchDomain definition_uri: include:enum_researchDomain from_schema: https://w3id.org/include rank: 1000 permissible_values: behavior_and_behavior_mechanisms: text: behavior_and_behavior_mechanisms meaning: mesh:D001520 title: Behavior and Behavior Mechanisms congenital_heart_defects: text: congenital_heart_defects meaning: mesh:D006330 title: Congenital Heart Defects immune_system_diseases: text: immune_system_diseases meaning: mesh:D007154 title: Immune System Diseases hematologic_diseases: text: hematologic_diseases meaning: mesh:D006402 title: Hematologic Diseases sleep_wake_disorders: text: sleep_wake_disorders meaning: mesh:D012893 title: Sleep Wake Disorders all_co_occurring_conditions: text: all_co_occurring_conditions meaning: mesh:D013568 title: All Co-occurring Conditions other: text: other title: Other","title":"Enum: EnumResearchDomain"},{"location":"EnumResearchDomain/#enum-enumresearchdomain","text":"URI: EnumResearchDomain","title":"Enum: EnumResearchDomain"},{"location":"EnumResearchDomain/#permissible-values","text":"Value Meaning Description behavior_and_behavior_mechanisms mesh:D001520 congenital_heart_defects mesh:D006330 immune_system_diseases mesh:D007154 hematologic_diseases mesh:D006402 sleep_wake_disorders mesh:D012893 all_co_occurring_conditions mesh:D013568 other None","title":"Permissible Values"},{"location":"EnumResearchDomain/#slots","text":"Name Description researchDomain Main research domain(s) of the study, other than Down syndrome; pipe-separate...","title":"Slots"},{"location":"EnumResearchDomain/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumResearchDomain/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"EnumResearchDomain/#linkml-source","text":"name: enum_researchDomain definition_uri: include:enum_researchDomain from_schema: https://w3id.org/include rank: 1000 permissible_values: behavior_and_behavior_mechanisms: text: behavior_and_behavior_mechanisms meaning: mesh:D001520 title: Behavior and Behavior Mechanisms congenital_heart_defects: text: congenital_heart_defects meaning: mesh:D006330 title: Congenital Heart Defects immune_system_diseases: text: immune_system_diseases meaning: mesh:D007154 title: Immune System Diseases hematologic_diseases: text: hematologic_diseases meaning: mesh:D006402 title: Hematologic Diseases sleep_wake_disorders: text: sleep_wake_disorders meaning: mesh:D012893 title: Sleep Wake Disorders all_co_occurring_conditions: text: all_co_occurring_conditions meaning: mesh:D013568 title: All Co-occurring Conditions other: text: other title: Other","title":"LinkML Source"},{"location":"EnumSampleAvailability/","text":"Enum: EnumSampleAvailability URI: EnumSampleAvailability Permissible Values Value Meaning Description available None Sample (any Container) is potentially available to be requested through the V... unavailable None Sample either was available through Virtual Biorepository but has been used u... Slots Name Description sampleAvailability Whether or not the sample is potentially available for sharing through the Vi... Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: enum_sampleAvailability definition_uri: include:enum_sampleAvailability from_schema: https://w3id.org/include rank: 1000 permissible_values: available: text: available description: Sample (any Container) is potentially available to be requested through the Virtual Biorepository (see VBR contact info in Study page) title: Available unavailable: text: unavailable description: Sample either was available through Virtual Biorepository but has been used up, or is part of a study that is not participating in the VBR title: Unavailable","title":"Enum: EnumSampleAvailability"},{"location":"EnumSampleAvailability/#enum-enumsampleavailability","text":"URI: EnumSampleAvailability","title":"Enum: EnumSampleAvailability"},{"location":"EnumSampleAvailability/#permissible-values","text":"Value Meaning Description available None Sample (any Container) is potentially available to be requested through the V... unavailable None Sample either was available through Virtual Biorepository but has been used u...","title":"Permissible Values"},{"location":"EnumSampleAvailability/#slots","text":"Name Description sampleAvailability Whether or not the sample is potentially available for sharing through the Vi...","title":"Slots"},{"location":"EnumSampleAvailability/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumSampleAvailability/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"EnumSampleAvailability/#linkml-source","text":"name: enum_sampleAvailability definition_uri: include:enum_sampleAvailability from_schema: https://w3id.org/include rank: 1000 permissible_values: available: text: available description: Sample (any Container) is potentially available to be requested through the Virtual Biorepository (see VBR contact info in Study page) title: Available unavailable: text: unavailable description: Sample either was available through Virtual Biorepository but has been used up, or is part of a study that is not participating in the VBR title: Unavailable","title":"LinkML Source"},{"location":"EnumSex/","text":"Enum: EnumSex URI: EnumSex Permissible Values Value Meaning Description female NCIT:C16576 male NCIT:C20197 other NCIT:C17649 unknown NCIT:C17998 Slots Name Description sex Sex of Participant Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: enum_sex definition_uri: include:enum_sex from_schema: https://w3id.org/include rank: 1000 permissible_values: female: text: female meaning: NCIT:C16576 title: Female male: text: male meaning: NCIT:C20197 title: Male other: text: other meaning: NCIT:C17649 title: Other unknown: text: unknown meaning: NCIT:C17998 title: Unknown","title":"Enum: EnumSex"},{"location":"EnumSex/#enum-enumsex","text":"URI: EnumSex","title":"Enum: EnumSex"},{"location":"EnumSex/#permissible-values","text":"Value Meaning Description female NCIT:C16576 male NCIT:C20197 other NCIT:C17649 unknown NCIT:C17998","title":"Permissible Values"},{"location":"EnumSex/#slots","text":"Name Description sex Sex of Participant","title":"Slots"},{"location":"EnumSex/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumSex/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"EnumSex/#linkml-source","text":"name: enum_sex definition_uri: include:enum_sex from_schema: https://w3id.org/include rank: 1000 permissible_values: female: text: female meaning: NCIT:C16576 title: Female male: text: male meaning: NCIT:C20197 title: Male other: text: other meaning: NCIT:C17649 title: Other unknown: text: unknown meaning: NCIT:C17998 title: Unknown","title":"LinkML Source"},{"location":"EnumStudyCode/","text":"Enum: EnumStudyCode URI: EnumStudyCode Permissible Values Value Meaning Description abc_ds None ads None aecom_ds None brainpower None bri_dsr None child_ds None charge_ds None ds_brain None ds_cog_all None ds_cog_aml None ds_determined None ds_hsat None ds_isp None ds_nexus None ds_pals None ds_pcgc None ds_sleep None ds360_chd None dsc None ecods None exceeds None htp None team_ds None trc_ds None x01_desmith None x01_hakonarson None Slots Name Description studyCode Unique identifer for the study (generally a short acronym) Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: enum_studyCode definition_uri: include:enum_studyCode from_schema: https://w3id.org/include rank: 1000 permissible_values: abc_ds: text: abc_ds title: ABC-DS ads: text: ads title: ADS aecom_ds: text: aecom_ds title: AECOM-DS brainpower: text: brainpower title: BrainPower bri_dsr: text: bri_dsr title: BRI-DSR child_ds: text: child_ds title: CHILD-DS charge_ds: text: charge_ds title: CHARGE-DS ds_brain: text: ds_brain title: DS-Brain ds_cog_all: text: ds_cog_all title: DS-COG-ALL ds_cog_aml: text: ds_cog_aml title: DS-COG-AML ds_determined: text: ds_determined title: DS-DETERMINED ds_hsat: text: ds_hsat title: DS-HSAT ds_isp: text: ds_isp title: DS-ISP ds_nexus: text: ds_nexus title: DS-Nexus ds_pals: text: ds_pals title: DS-PALS ds_pcgc: text: ds_pcgc title: DS-PCGC ds_sleep: text: ds_sleep title: DS-Sleep ds360_chd: text: ds360_chd title: DS360-CHD dsc: text: dsc title: DSC ecods: text: ecods title: ECODS exceeds: text: exceeds title: EXcEEDS htp: text: htp title: HTP team_ds: text: team_ds title: TEAM-DS trc_ds: text: trc_ds title: TRC-DS x01_desmith: text: x01_desmith title: X01-deSmith x01_hakonarson: text: x01_hakonarson title: X01-Hakonarson","title":"Enum: EnumStudyCode"},{"location":"EnumStudyCode/#enum-enumstudycode","text":"URI: EnumStudyCode","title":"Enum: EnumStudyCode"},{"location":"EnumStudyCode/#permissible-values","text":"Value Meaning Description abc_ds None ads None aecom_ds None brainpower None bri_dsr None child_ds None charge_ds None ds_brain None ds_cog_all None ds_cog_aml None ds_determined None ds_hsat None ds_isp None ds_nexus None ds_pals None ds_pcgc None ds_sleep None ds360_chd None dsc None ecods None exceeds None htp None team_ds None trc_ds None x01_desmith None x01_hakonarson None","title":"Permissible Values"},{"location":"EnumStudyCode/#slots","text":"Name Description studyCode Unique identifer for the study (generally a short acronym)","title":"Slots"},{"location":"EnumStudyCode/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumStudyCode/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"EnumStudyCode/#linkml-source","text":"name: enum_studyCode definition_uri: include:enum_studyCode from_schema: https://w3id.org/include rank: 1000 permissible_values: abc_ds: text: abc_ds title: ABC-DS ads: text: ads title: ADS aecom_ds: text: aecom_ds title: AECOM-DS brainpower: text: brainpower title: BrainPower bri_dsr: text: bri_dsr title: BRI-DSR child_ds: text: child_ds title: CHILD-DS charge_ds: text: charge_ds title: CHARGE-DS ds_brain: text: ds_brain title: DS-Brain ds_cog_all: text: ds_cog_all title: DS-COG-ALL ds_cog_aml: text: ds_cog_aml title: DS-COG-AML ds_determined: text: ds_determined title: DS-DETERMINED ds_hsat: text: ds_hsat title: DS-HSAT ds_isp: text: ds_isp title: DS-ISP ds_nexus: text: ds_nexus title: DS-Nexus ds_pals: text: ds_pals title: DS-PALS ds_pcgc: text: ds_pcgc title: DS-PCGC ds_sleep: text: ds_sleep title: DS-Sleep ds360_chd: text: ds360_chd title: DS360-CHD dsc: text: dsc title: DSC ecods: text: ecods title: ECODS exceeds: text: exceeds title: EXcEEDS htp: text: htp title: HTP team_ds: text: team_ds title: TEAM-DS trc_ds: text: trc_ds title: TRC-DS x01_desmith: text: x01_desmith title: X01-deSmith x01_hakonarson: text: x01_hakonarson title: X01-Hakonarson","title":"LinkML Source"},{"location":"EnumVitalStatus/","text":"Enum: EnumVitalStatus URI: EnumVitalStatus Permissible Values Value Meaning Description dead NCIT:C28554 alive NCIT:C37987 unknown_or_not_available NCIT:C17998 Slots Name Description outcomesVitalStatus Whether participant is alive or dead Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: enum_vital_status definition_uri: include:vital_status from_schema: https://w3id.org/include rank: 1000 permissible_values: dead: text: dead meaning: NCIT:C28554 title: Dead alive: text: alive meaning: NCIT:C37987 title: Alive unknown_or_not_available: text: unknown_or_not_available meaning: NCIT:C17998 title: Unknown or not available","title":"Enum: EnumVitalStatus"},{"location":"EnumVitalStatus/#enum-enumvitalstatus","text":"URI: EnumVitalStatus","title":"Enum: EnumVitalStatus"},{"location":"EnumVitalStatus/#permissible-values","text":"Value Meaning Description dead NCIT:C28554 alive NCIT:C37987 unknown_or_not_available NCIT:C17998","title":"Permissible Values"},{"location":"EnumVitalStatus/#slots","text":"Name Description outcomesVitalStatus Whether participant is alive or dead","title":"Slots"},{"location":"EnumVitalStatus/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"EnumVitalStatus/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"EnumVitalStatus/#linkml-source","text":"name: enum_vital_status definition_uri: include:vital_status from_schema: https://w3id.org/include rank: 1000 permissible_values: dead: text: dead meaning: NCIT:C28554 title: Dead alive: text: alive meaning: NCIT:C37987 title: Alive unknown_or_not_available: text: unknown_or_not_available meaning: NCIT:C17998 title: Unknown or not available","title":"LinkML Source"},{"location":"Float/","text":"Type: Float A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Float"},{"location":"Float/#type-float","text":"A real number that conforms to the xsd:float specification URI: xsd:float base : float uri : xsd:float","title":"Type: Float"},{"location":"Float/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Float/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Integer/","text":"Type: Integer An integer URI: xsd:integer base : int uri : xsd:integer Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Integer"},{"location":"Integer/#type-integer","text":"An integer URI: xsd:integer base : int uri : xsd:integer","title":"Type: Integer"},{"location":"Integer/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Integer/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Jsonpath/","text":"Type: Jsonpath A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Jsonpath"},{"location":"Jsonpath/#type-jsonpath","text":"A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Jsonpath"},{"location":"Jsonpath/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Jsonpath/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Jsonpointer/","text":"Type: Jsonpointer A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Jsonpointer"},{"location":"Jsonpointer/#type-jsonpointer","text":"A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Jsonpointer"},{"location":"Jsonpointer/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Jsonpointer/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Ncname/","text":"Type: Ncname Prefix part of CURIE URI: xsd:string base : NCName uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Ncname"},{"location":"Ncname/#type-ncname","text":"Prefix part of CURIE URI: xsd:string base : NCName uri : xsd:string repr : str","title":"Type: Ncname"},{"location":"Ncname/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Ncname/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Nodeidentifier/","text":"Type: Nodeidentifier A URI, CURIE or BNODE that represents a node in a model. 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URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str Comments Used for inheritance and type checking Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#type-objectidentifier","text":"A URI or CURIE that represents an object in the model. URI: shex:iri base : ElementIdentifier uri : shex:iri repr : str","title":"Type: Objectidentifier"},{"location":"Objectidentifier/#comments","text":"Used for inheritance and type checking","title":"Comments"},{"location":"Objectidentifier/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Objectidentifier/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Participant/","text":"Class: Participant (Participant) Demographic and clinical information about the participant URI: include:Participant classDiagram class Participant Thing <|-- Participant Participant : ageAtFirstPatientEngagement Participant : ageAtLastVitalStatus Participant : downSyndromeStatus Participant --> enum_downSyndromeStatus : downSyndromeStatus Participant : ethnicity Participant --> enum_ethnicity : ethnicity Participant : familyId Participant : familyRelationship Participant --> enum_familyRelationship : familyRelationship Participant : familyType Participant --> enum_familyType : familyType Participant : fatherId Participant : firstPatientEngagementEvent Participant --> None : firstPatientEngagementEvent Participant : hasStudy Participant --> Study : hasStudy Participant : motherId Participant : otherFamilyMemberId Participant : outcomesVitalStatus Participant --> enum_vital_status : outcomesVitalStatus Participant : participantExternalId Participant : participantGlobalId Participant : race Participant --> enum_race : race Participant : sex Participant --> enum_sex : sex Participant : siblingId Inheritance Thing Participant Slots Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct participantGlobalId 1..1 String Unique INCLUDE global identifier for the participant, assigned by DCC direct participantExternalId 1..1 String Unique, de-identified identifier for the participant, assigned by data contri... direct familyId 0..1 String Unique identifer for family to which Participant belongs, assigned by data co... direct familyType 1..1 EnumFamilyType Structure of family members participating in the study direct fatherId 0..1 String Participant External ID for Participant's father (NA if Participant is not th... direct motherId 0..1 String Participant External ID for Participant's mother (NA if Participant is not th... direct siblingId 0..1 String Participant External ID for Participant's sibling(s) (NA if Participant is no... direct otherFamilyMemberId 0..1 String Participant External ID for Participant's other family members (NA if Partici... direct familyRelationship 1..1 EnumFamilyRelationship Relationship of Participant to proband direct sex 1..1 EnumSex Sex of Participant direct race 1..1 EnumRace Race of Participant direct ethnicity 1..1 EnumEthnicity Ethnicity of Participant direct downSyndromeStatus 1..1 EnumDownSyndromeStatus Down Syndrome status of participant direct ageAtFirstPatientEngagement 1..1 Integer Age in days of Participant at first recorded study event (enrollment, visit, ... direct firstPatientEngagementEvent 1..1 String Event for which Age at First Patient Engagement is given (e direct outcomesVitalStatus 0..1 EnumVitalStatus Whether participant is alive or dead direct ageAtLastVitalStatus 0..1 Integer Age in days when participant's vital status was last recorded direct Usages used by used in type used Biospecimen hasParticipant range Participant DataFile hasParticipant range Participant Condition hasParticipant range Participant Identifier and Mapping Information Annotations property value required True Schema Source from schema: https://w3id.org/include Mappings Mapping Type Mapped Value self include:Participant native include:Participant LinkML Source Direct name: Participant definition_uri: include:Participant annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,DataFile description: Demographic and clinical information about the participant title: Participant from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - participantGlobalId - participantExternalId - familyId - familyType - fatherId - motherId - siblingId - otherFamilyMemberId - familyRelationship - sex - race - ethnicity - downSyndromeStatus - ageAtFirstPatientEngagement - firstPatientEngagementEvent - outcomesVitalStatus - ageAtLastVitalStatus Induced name: Participant definition_uri: include:Participant annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,DataFile description: Demographic and clinical information about the participant title: Participant from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: Participant domain_of: - Biospecimen - DataFile - Dataset - Participant - Condition range: Study participantGlobalId: name: participantGlobalId definition_uri: include:participantGlobalId description: Unique INCLUDE global identifier for the participant, assigned by DCC title: Participant Global ID from_schema: https://w3id.org/include rank: 1000 alias: participantGlobalId owner: Participant domain_of: - Participant range: string required: true participantExternalId: name: participantExternalId definition_uri: include:participantExternalId description: Unique, de-identified identifier for the participant, assigned by data contributor. External IDs must be two steps removed from personal information in the study records. title: Participant External ID from_schema: https://w3id.org/include rank: 1000 alias: participantExternalId owner: Participant domain_of: - Participant range: string required: true familyId: name: familyId definition_uri: include:familyId description: Unique identifer for family to which Participant belongs, assigned by data contributor title: Family ID from_schema: https://w3id.org/include rank: 1000 alias: familyId owner: Participant domain_of: - Participant range: string familyType: name: familyType definition_uri: include:familyType description: Structure of family members participating in the study title: Family Type from_schema: https://w3id.org/include rank: 1000 alias: familyType owner: Participant domain_of: - Participant range: enum_familyType required: true fatherId: name: fatherId definition_uri: include:fatherId description: Participant External ID for Participant's father (NA if Participant is not the proband) title: Father ID from_schema: https://w3id.org/include rank: 1000 alias: fatherId owner: Participant domain_of: - Participant range: string motherId: name: motherId definition_uri: include:motherId description: Participant External ID for Participant's mother (NA if Participant is not the proband) title: Mother ID from_schema: https://w3id.org/include rank: 1000 alias: motherId owner: Participant domain_of: - Participant range: string siblingId: name: siblingId definition_uri: include:siblingId description: Participant External ID for Participant's sibling(s) (NA if Participant is not the proband) title: Sibling ID from_schema: https://w3id.org/include rank: 1000 alias: siblingId owner: Participant domain_of: - Participant range: string otherFamilyMemberId: name: otherFamilyMemberId definition_uri: include:otherFamilyMemberId description: Participant External ID for Participant's other family members (NA if Participant is not the proband) title: Other Family Member ID from_schema: https://w3id.org/include rank: 1000 alias: otherFamilyMemberId owner: Participant domain_of: - Participant range: string familyRelationship: name: familyRelationship definition_uri: include:familyRelationship description: Relationship of Participant to proband title: Family Relationship from_schema: https://w3id.org/include rank: 1000 alias: familyRelationship owner: Participant domain_of: - Participant range: enum_familyRelationship required: true sex: name: sex definition_uri: include:sex description: Sex of Participant title: Sex from_schema: https://w3id.org/include rank: 1000 alias: sex owner: Participant domain_of: - Participant range: enum_sex required: true race: name: race definition_uri: include:race description: Race of Participant title: Race from_schema: https://w3id.org/include rank: 1000 alias: race owner: Participant domain_of: - Participant range: enum_race required: true ethnicity: name: ethnicity definition_uri: include:ethnicity description: Ethnicity of Participant title: Ethnicity from_schema: https://w3id.org/include rank: 1000 alias: ethnicity owner: Participant domain_of: - Participant range: enum_ethnicity required: true downSyndromeStatus: name: downSyndromeStatus definition_uri: include:downSyndromeStatus description: Down Syndrome status of participant title: Down Syndrome Status from_schema: https://w3id.org/include rank: 1000 alias: downSyndromeStatus owner: Participant domain_of: - Participant range: enum_downSyndromeStatus required: true ageAtFirstPatientEngagement: name: ageAtFirstPatientEngagement definition_uri: include:ageAtFirstPatientEngagement description: Age in days of Participant at first recorded study event (enrollment, visit, observation, sample collection, survey completion, etc.). Age at enrollment is preferred, if available. title: Age at First Patient Engagement from_schema: https://w3id.org/include rank: 1000 alias: ageAtFirstPatientEngagement owner: Participant domain_of: - Participant range: integer required: true firstPatientEngagementEvent: name: firstPatientEngagementEvent definition_uri: include:firstPatientEngagementEvent description: Event for which Age at First Patient Engagement is given (e.g. enrollment, visit, observation, sample collection, survey completion, etc.). Age at enrollment is preferred, if available. title: First Patient Engagement Event from_schema: https://w3id.org/include rank: 1000 alias: firstPatientEngagementEvent owner: Participant domain_of: - Participant required: true outcomesVitalStatus: name: outcomesVitalStatus definition_uri: include:outcomesVitalStatus description: Whether participant is alive or dead title: Outcomes Vital Status from_schema: https://w3id.org/include rank: 1000 alias: outcomesVitalStatus owner: Participant domain_of: - Participant range: enum_vital_status ageAtLastVitalStatus: name: ageAtLastVitalStatus definition_uri: include:ageAtLastVitalStatus description: Age in days when participant's vital status was last recorded title: Age at Last Vital Status from_schema: https://w3id.org/include rank: 1000 alias: ageAtLastVitalStatus owner: Participant domain_of: - Participant range: integer","title":"Class: Participant (Participant)"},{"location":"Participant/#class-participant-participant","text":"Demographic and clinical information about the participant URI: include:Participant classDiagram class Participant Thing <|-- Participant Participant : ageAtFirstPatientEngagement Participant : ageAtLastVitalStatus Participant : downSyndromeStatus Participant --> enum_downSyndromeStatus : downSyndromeStatus Participant : ethnicity Participant --> enum_ethnicity : ethnicity Participant : familyId Participant : familyRelationship Participant --> enum_familyRelationship : familyRelationship Participant : familyType Participant --> enum_familyType : familyType Participant : fatherId Participant : firstPatientEngagementEvent Participant --> None : firstPatientEngagementEvent Participant : hasStudy Participant --> Study : hasStudy Participant : motherId Participant : otherFamilyMemberId Participant : outcomesVitalStatus Participant --> enum_vital_status : outcomesVitalStatus Participant : participantExternalId Participant : participantGlobalId Participant : race Participant --> enum_race : race Participant : sex Participant --> enum_sex : sex Participant : siblingId","title":"Class: Participant (Participant)"},{"location":"Participant/#inheritance","text":"Thing Participant","title":"Inheritance"},{"location":"Participant/#slots","text":"Name Cardinality and Range Description Inheritance hasStudy 0..1 Study Link to a Study direct participantGlobalId 1..1 String Unique INCLUDE global identifier for the participant, assigned by DCC direct participantExternalId 1..1 String Unique, de-identified identifier for the participant, assigned by data contri... direct familyId 0..1 String Unique identifer for family to which Participant belongs, assigned by data co... direct familyType 1..1 EnumFamilyType Structure of family members participating in the study direct fatherId 0..1 String Participant External ID for Participant's father (NA if Participant is not th... direct motherId 0..1 String Participant External ID for Participant's mother (NA if Participant is not th... direct siblingId 0..1 String Participant External ID for Participant's sibling(s) (NA if Participant is no... direct otherFamilyMemberId 0..1 String Participant External ID for Participant's other family members (NA if Partici... direct familyRelationship 1..1 EnumFamilyRelationship Relationship of Participant to proband direct sex 1..1 EnumSex Sex of Participant direct race 1..1 EnumRace Race of Participant direct ethnicity 1..1 EnumEthnicity Ethnicity of Participant direct downSyndromeStatus 1..1 EnumDownSyndromeStatus Down Syndrome status of participant direct ageAtFirstPatientEngagement 1..1 Integer Age in days of Participant at first recorded study event (enrollment, visit, ... direct firstPatientEngagementEvent 1..1 String Event for which Age at First Patient Engagement is given (e direct outcomesVitalStatus 0..1 EnumVitalStatus Whether participant is alive or dead direct ageAtLastVitalStatus 0..1 Integer Age in days when participant's vital status was last recorded direct","title":"Slots"},{"location":"Participant/#usages","text":"used by used in type used Biospecimen hasParticipant range Participant DataFile hasParticipant range Participant Condition hasParticipant range Participant","title":"Usages"},{"location":"Participant/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Participant/#annotations","text":"property value required True","title":"Annotations"},{"location":"Participant/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Participant/#mappings","text":"Mapping Type Mapped Value self include:Participant native include:Participant","title":"Mappings"},{"location":"Participant/#linkml-source","text":"","title":"LinkML Source"},{"location":"Participant/#direct","text":"name: Participant definition_uri: include:Participant annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,DataFile description: Demographic and clinical information about the participant title: Participant from_schema: https://w3id.org/include is_a: Thing slots: - hasStudy - participantGlobalId - participantExternalId - familyId - familyType - fatherId - motherId - siblingId - otherFamilyMemberId - familyRelationship - sex - race - ethnicity - downSyndromeStatus - ageAtFirstPatientEngagement - firstPatientEngagementEvent - outcomesVitalStatus - ageAtLastVitalStatus","title":"Direct"},{"location":"Participant/#induced","text":"name: Participant definition_uri: include:Participant annotations: required: tag: required value: 'True' requires_component: tag: requires_component value: Study,DataFile description: Demographic and clinical information about the participant title: Participant from_schema: https://w3id.org/include is_a: Thing attributes: hasStudy: name: hasStudy definition_uri: include:hasStudy description: Link to a Study title: Has Study from_schema: https://w3id.org/include rank: 1000 alias: hasStudy owner: Participant domain_of: - Biospecimen - DataFile - Dataset - Participant - Condition range: Study participantGlobalId: name: participantGlobalId definition_uri: include:participantGlobalId description: Unique INCLUDE global identifier for the participant, assigned by DCC title: Participant Global ID from_schema: https://w3id.org/include rank: 1000 alias: participantGlobalId owner: Participant domain_of: - Participant range: string required: true participantExternalId: name: participantExternalId definition_uri: include:participantExternalId description: Unique, de-identified identifier for the participant, assigned by data contributor. External IDs must be two steps removed from personal information in the study records. title: Participant External ID from_schema: https://w3id.org/include rank: 1000 alias: participantExternalId owner: Participant domain_of: - Participant range: string required: true familyId: name: familyId definition_uri: include:familyId description: Unique identifer for family to which Participant belongs, assigned by data contributor title: Family ID from_schema: https://w3id.org/include rank: 1000 alias: familyId owner: Participant domain_of: - Participant range: string familyType: name: familyType definition_uri: include:familyType description: Structure of family members participating in the study title: Family Type from_schema: https://w3id.org/include rank: 1000 alias: familyType owner: Participant domain_of: - Participant range: enum_familyType required: true fatherId: name: fatherId definition_uri: include:fatherId description: Participant External ID for Participant's father (NA if Participant is not the proband) title: Father ID from_schema: https://w3id.org/include rank: 1000 alias: fatherId owner: Participant domain_of: - Participant range: string motherId: name: motherId definition_uri: include:motherId description: Participant External ID for Participant's mother (NA if Participant is not the proband) title: Mother ID from_schema: https://w3id.org/include rank: 1000 alias: motherId owner: Participant domain_of: - Participant range: string siblingId: name: siblingId definition_uri: include:siblingId description: Participant External ID for Participant's sibling(s) (NA if Participant is not the proband) title: Sibling ID from_schema: https://w3id.org/include rank: 1000 alias: siblingId owner: Participant domain_of: - Participant range: string otherFamilyMemberId: name: otherFamilyMemberId definition_uri: include:otherFamilyMemberId description: Participant External ID for Participant's other family members (NA if Participant is not the proband) title: Other Family Member ID from_schema: https://w3id.org/include rank: 1000 alias: otherFamilyMemberId owner: Participant domain_of: - Participant range: string familyRelationship: name: familyRelationship definition_uri: include:familyRelationship description: Relationship of Participant to proband title: Family Relationship from_schema: https://w3id.org/include rank: 1000 alias: familyRelationship owner: Participant domain_of: - Participant range: enum_familyRelationship required: true sex: name: sex definition_uri: include:sex description: Sex of Participant title: Sex from_schema: https://w3id.org/include rank: 1000 alias: sex owner: Participant domain_of: - Participant range: enum_sex required: true race: name: race definition_uri: include:race description: Race of Participant title: Race from_schema: https://w3id.org/include rank: 1000 alias: race owner: Participant domain_of: - Participant range: enum_race required: true ethnicity: name: ethnicity definition_uri: include:ethnicity description: Ethnicity of Participant title: Ethnicity from_schema: https://w3id.org/include rank: 1000 alias: ethnicity owner: Participant domain_of: - Participant range: enum_ethnicity required: true downSyndromeStatus: name: downSyndromeStatus definition_uri: include:downSyndromeStatus description: Down Syndrome status of participant title: Down Syndrome Status from_schema: https://w3id.org/include rank: 1000 alias: downSyndromeStatus owner: Participant domain_of: - Participant range: enum_downSyndromeStatus required: true ageAtFirstPatientEngagement: name: ageAtFirstPatientEngagement definition_uri: include:ageAtFirstPatientEngagement description: Age in days of Participant at first recorded study event (enrollment, visit, observation, sample collection, survey completion, etc.). Age at enrollment is preferred, if available. title: Age at First Patient Engagement from_schema: https://w3id.org/include rank: 1000 alias: ageAtFirstPatientEngagement owner: Participant domain_of: - Participant range: integer required: true firstPatientEngagementEvent: name: firstPatientEngagementEvent definition_uri: include:firstPatientEngagementEvent description: Event for which Age at First Patient Engagement is given (e.g. enrollment, visit, observation, sample collection, survey completion, etc.). Age at enrollment is preferred, if available. title: First Patient Engagement Event from_schema: https://w3id.org/include rank: 1000 alias: firstPatientEngagementEvent owner: Participant domain_of: - Participant required: true outcomesVitalStatus: name: outcomesVitalStatus definition_uri: include:outcomesVitalStatus description: Whether participant is alive or dead title: Outcomes Vital Status from_schema: https://w3id.org/include rank: 1000 alias: outcomesVitalStatus owner: Participant domain_of: - Participant range: enum_vital_status ageAtLastVitalStatus: name: ageAtLastVitalStatus definition_uri: include:ageAtLastVitalStatus description: Age in days when participant's vital status was last recorded title: Age at Last Vital Status from_schema: https://w3id.org/include rank: 1000 alias: ageAtLastVitalStatus owner: Participant domain_of: - Participant range: integer","title":"Induced"},{"location":"Sparqlpath/","text":"Type: Sparqlpath A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. URI: xsd:string base : str uri : xsd:string repr : str Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: Sparqlpath"},{"location":"Sparqlpath/#type-sparqlpath","text":"A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. URI: xsd:string base : str uri : xsd:string repr : str","title":"Type: Sparqlpath"},{"location":"Sparqlpath/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"Sparqlpath/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"String/","text":"Type: String A character string URI: xsd:string base : str uri : xsd:string Identifier and Mapping Information Schema Source from schema: https://w3id.org/include","title":"Type: String"},{"location":"String/#type-string","text":"A character string URI: xsd:string base : str uri : xsd:string","title":"Type: String"},{"location":"String/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"String/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"Study/","text":"Class: Study (Study) General information about the study URI: include:Study classDiagram class Study Thing <|-- Study Study : clinicalDataSourceType Study --> enum_clinicalDataSourceType : clinicalDataSourceType Study : expectedDataCategory Study --> enum_DataCategory : expectedDataCategory Study : guidType Study --> enum_guidType : guidType Study : participantLifespanStage Study --> enum_participantLifespanStage : participantLifespanStage Study : principalInvestigatorName Study : program Study --> enum_program : program Study : researchDomain Study --> enum_researchDomain : researchDomain Study : selectionCriteria Study : studyCode Study --> enum_studyCode : studyCode Study : studyContactEmail Study : studyContactInstitution Study : studyContactName Study : studyDbgap Study : studyDescription Study : studyDesign Study : studyExpectedNumberOfParticipants Study : studyPublication Study : studyTitle Study : studyWebsite Study : vbrEmail Study : vbrReadme Study : vbrUrl Inheritance Thing Study Slots Name Cardinality and Range Description Inheritance studyCode 1..1 EnumStudyCode Unique identifer for the study (generally a short acronym) direct studyTitle 1..1 String Full title of the study direct program 1..* EnumProgram Funding source(s) for the study (pipe-separated if multiple) direct studyDescription 1..1 String Brief description of the study (2-4 sentences) direct principalInvestigatorName 1..* String Name(s) of Principal Investigator(s) of this study; pipe-separated if multipl... direct studyContactName 1..* String Name of contact person for this study; pipe-separated if multiple direct studyContactInstitution 1..* String Institution of contact person for this study; pipe-separated if multiple direct studyContactEmail 1..* String Email address of contact person for this study; pipe-separated if multiple direct vbrEmail 0..1 String Email address for Virtual Biorepository requests/inquiries direct vbrUrl 0..1 Uri Link to Virtual Biorepository request form direct vbrReadme 0..1 String Instructions for contacting or requesting samples from Virtual Biorepository direct researchDomain 1..* EnumResearchDomain Main research domain(s) of the study, other than Down syndrome; pipe-separate... direct participantLifespanStage 1..* EnumParticipantLifespanStage Focus age group(s) of the study population; pipe-separated if multiple direct selectionCriteria 0..1 String Brief description of inclusion and/or exclusion criteria for the study direct studyDesign 1..1 String Overall design of study, including whether it is longitudinal and whether fam... direct clinicalDataSourceType 1..* EnumClinicalDataSourceType Source(s) of data collected from study participants; pipe-separated if multip... direct expectedDataCategory 1..* EnumDataCategory Categories of data expected to be collected in this study direct studyWebsite 0..1 Uri Website for the study direct studyDbgap 0..* String dbGaP \"phs\" accession code(s) associated with this Study, either for access o... direct studyPublication 0..* Uri URL for publication(s) describing the study's rationale and methodology (PubM... direct studyExpectedNumberOfParticipants 1..1 Integer Expected number of participants in this study direct guidType 1..1 EnumGuidType System used to generate globally unique identifiers (GUIDs) direct Usages used by used in type used Biospecimen hasStudy range Study DataFile hasStudy range Study Dataset hasStudy range Study Participant hasStudy range Study Condition hasStudy range Study Identifier and Mapping Information Annotations property value required True Schema Source from schema: https://w3id.org/include Mappings Mapping Type Mapped Value self include:Study native include:Study LinkML Source Direct name: Study definition_uri: include:Study annotations: required: tag: required value: 'True' description: General information about the study title: Study from_schema: https://w3id.org/include is_a: Thing slots: - studyCode - studyTitle - program - studyDescription - principalInvestigatorName - studyContactName - studyContactInstitution - studyContactEmail - vbrEmail - vbrUrl - vbrReadme - researchDomain - participantLifespanStage - selectionCriteria - studyDesign - clinicalDataSourceType - expectedDataCategory - studyWebsite - studyDbgap - studyPublication - studyExpectedNumberOfParticipants - guidType Induced name: Study definition_uri: include:Study annotations: required: tag: required value: 'True' description: General information about the study title: Study from_schema: https://w3id.org/include is_a: Thing attributes: studyCode: name: studyCode definition_uri: include:studyCode description: Unique identifer for the study (generally a short acronym) title: Study Code from_schema: https://w3id.org/include rank: 1000 alias: studyCode owner: Study domain_of: - Study range: enum_studyCode required: true studyTitle: name: studyTitle definition_uri: include:studyTitle description: Full title of the study title: Study Title from_schema: https://w3id.org/include rank: 1000 alias: studyTitle owner: Study domain_of: - Study range: string required: true program: name: program definition_uri: include:program description: Funding source(s) for the study (pipe-separated if multiple) title: Program from_schema: https://w3id.org/include rank: 1000 multivalued: true alias: program owner: Study domain_of: - Study range: enum_program required: true studyDescription: name: studyDescription definition_uri: include:studyDescription description: Brief description of the study (2-4 sentences). Should match description in https://includedcc.org/studies. title: Study Description from_schema: https://w3id.org/include rank: 1000 alias: studyDescription owner: Study domain_of: - Study range: string required: true principalInvestigatorName: name: principalInvestigatorName definition_uri: include:principalInvestigatorName description: Name(s) of Principal Investigator(s) of this study; pipe-separated if multiple title: Principal Investigator Name from_schema: https://w3id.org/include rank: 1000 multivalued: true alias: principalInvestigatorName owner: Study domain_of: - Study range: string required: true studyContactName: name: studyContactName definition_uri: include:studyContactName description: Name of contact person for this study; pipe-separated if multiple title: Study Contact Name from_schema: https://w3id.org/include rank: 1000 multivalued: true alias: studyContactName owner: Study domain_of: - Study range: string required: true studyContactInstitution: name: studyContactInstitution definition_uri: include:studyContactInstitution description: Institution of contact person for this study; pipe-separated if multiple title: Study Contact Institution from_schema: https://w3id.org/include rank: 1000 multivalued: true alias: studyContactInstitution owner: Study domain_of: - Study range: string required: true studyContactEmail: name: studyContactEmail definition_uri: include:studyContactEmail description: Email address of contact person for this study; pipe-separated if multiple title: Study Contact Email from_schema: https://w3id.org/include rank: 1000 multivalued: true alias: studyContactEmail owner: Study domain_of: - Study range: string required: true vbrEmail: name: vbrEmail definition_uri: include:vbrEmail description: Email address for Virtual Biorepository requests/inquiries title: VBR Email from_schema: https://w3id.org/include rank: 1000 alias: vbrEmail owner: Study domain_of: - Study range: string vbrUrl: name: vbrUrl definition_uri: include:vbrUrl description: Link to Virtual Biorepository request form title: VBR URL from_schema: https://w3id.org/include rank: 1000 alias: vbrUrl owner: Study domain_of: - Study range: uri vbrReadme: name: vbrReadme definition_uri: include:vbrReadme description: Instructions for contacting or requesting samples from Virtual Biorepository title: VBR Readme from_schema: https://w3id.org/include rank: 1000 alias: vbrReadme owner: Study domain_of: - Study range: string researchDomain: name: researchDomain definition_uri: include:researchDomain description: Main research domain(s) of the study, other than Down syndrome; pipe-separated if multiple title: Research Domain from_schema: https://w3id.org/include rank: 1000 multivalued: true alias: researchDomain owner: Study domain_of: - Study range: enum_researchDomain required: true participantLifespanStage: name: participantLifespanStage definition_uri: include:participantLifespanStage description: Focus age group(s) of the study population; pipe-separated if multiple title: Participant Lifespan Stage from_schema: https://w3id.org/include rank: 1000 multivalued: true alias: participantLifespanStage owner: Study domain_of: - Study range: enum_participantLifespanStage required: true selectionCriteria: name: selectionCriteria definition_uri: include:selectionCriteria description: Brief description of inclusion and/or exclusion criteria for the study title: Selection Criteria from_schema: https://w3id.org/include rank: 1000 alias: selectionCriteria owner: Study domain_of: - Study range: string studyDesign: name: studyDesign definition_uri: include:studyDesign description: Overall design of study, including whether it is longitudinal and whether family members/unrelated controls are also enrolled title: Study Design from_schema: https://w3id.org/include rank: 1000 alias: studyDesign owner: Study domain_of: - Study range: string required: true clinicalDataSourceType: name: clinicalDataSourceType definition_uri: include:clinicalDataSourceType description: Source(s) of data collected from study participants; pipe-separated if multiple title: Clinical Data Source Type from_schema: https://w3id.org/include rank: 1000 multivalued: true alias: clinicalDataSourceType owner: Study domain_of: - Study range: enum_clinicalDataSourceType required: true expectedDataCategory: name: expectedDataCategory definition_uri: include:expectedDataCategory description: Categories of data expected to be collected in this study title: Expected Data Category from_schema: https://w3id.org/include rank: 1000 multivalued: true alias: expectedDataCategory owner: Study domain_of: - Study range: enum_DataCategory required: true studyWebsite: name: studyWebsite definition_uri: include:studyWebsite description: Website for the study title: Study Website from_schema: https://w3id.org/include rank: 1000 alias: studyWebsite owner: Study domain_of: - Study range: uri studyDbgap: name: studyDbgap definition_uri: include:studyDbgap description: dbGaP \"phs\" accession code(s) associated with this Study, either for access or informational purposes (pipe-separated if multiple) title: Study dbGaP from_schema: https://w3id.org/include rank: 1000 multivalued: true alias: studyDbgap owner: Study domain_of: - Study range: string studyPublication: name: studyPublication definition_uri: include:studyPublication description: URL for publication(s) describing the study's rationale and methodology (PubMed Central preferred but not required; 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Age at enrollment is preferred, if available. title: Age at First Patient Engagement from_schema: https://w3id.org/include rank: 1000 alias: ageAtFirstPatientEngagement domain_of: - Participant range: integer required: true","title":"LinkML Source"},{"location":"ageAtLastVitalStatus/","text":"Slot: Age at Last Vital Status (ageAtLastVitalStatus) Age in days when participant's vital status was last recorded URI: include:ageAtLastVitalStatus Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: Integer Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: ageAtLastVitalStatus definition_uri: include:ageAtLastVitalStatus description: Age in days when participant's vital status was last recorded title: Age at Last Vital Status from_schema: https://w3id.org/include rank: 1000 alias: ageAtLastVitalStatus domain_of: - Participant range: integer","title":"Slot: Age at Last Vital Status (ageAtLastVitalStatus)"},{"location":"ageAtLastVitalStatus/#slot-age-at-last-vital-status-ageatlastvitalstatus","text":"Age in days when participant's vital status was last recorded URI: include:ageAtLastVitalStatus","title":"Slot: Age at Last Vital Status (ageAtLastVitalStatus)"},{"location":"ageAtLastVitalStatus/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"ageAtLastVitalStatus/#properties","text":"Range: Integer","title":"Properties"},{"location":"ageAtLastVitalStatus/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"ageAtLastVitalStatus/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"ageAtLastVitalStatus/#linkml-source","text":"name: ageAtLastVitalStatus definition_uri: include:ageAtLastVitalStatus description: Age in days when participant's vital status was last recorded title: Age at Last Vital Status from_schema: https://w3id.org/include rank: 1000 alias: ageAtLastVitalStatus domain_of: - Participant range: integer","title":"LinkML Source"},{"location":"biospecimenStorage/","text":"Slot: Biospecimen Storage (biospecimenStorage) Method by which Container is stored (e.g. Minus 80 degrees Celsius, Liquid nitrogen storage) URI: include:biospecimenStorage Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: biospecimenStorage definition_uri: include:biospecimenStorage description: Method by which Container is stored (e.g. Minus 80 degrees Celsius, Liquid nitrogen storage) title: Biospecimen Storage from_schema: https://w3id.org/include rank: 1000 alias: biospecimenStorage domain_of: - Biospecimen range: string","title":"Slot: Biospecimen Storage (biospecimenStorage)"},{"location":"biospecimenStorage/#slot-biospecimen-storage-biospecimenstorage","text":"Method by which Container is stored (e.g. Minus 80 degrees Celsius, Liquid nitrogen storage) URI: include:biospecimenStorage","title":"Slot: Biospecimen Storage (biospecimenStorage)"},{"location":"biospecimenStorage/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"biospecimenStorage/#properties","text":"Range: String","title":"Properties"},{"location":"biospecimenStorage/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"biospecimenStorage/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"biospecimenStorage/#linkml-source","text":"name: biospecimenStorage definition_uri: include:biospecimenStorage description: Method by which Container is stored (e.g. Minus 80 degrees Celsius, Liquid nitrogen storage) title: Biospecimen Storage from_schema: https://w3id.org/include rank: 1000 alias: biospecimenStorage domain_of: - Biospecimen range: string","title":"LinkML Source"},{"location":"clinicalDataSourceType/","text":"Slot: Clinical Data Source Type (clinicalDataSourceType) Source(s) of data collected from study participants; pipe-separated if multiple URI: include:clinicalDataSourceType Applicable Classes Name Description Modifies Slot Study General information about the study no Properties Range: EnumClinicalDataSourceType Multivalued: True Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: clinicalDataSourceType definition_uri: include:clinicalDataSourceType description: Source(s) of data collected from study participants; pipe-separated if multiple title: Clinical Data Source Type from_schema: https://w3id.org/include rank: 1000 multivalued: true alias: clinicalDataSourceType domain_of: - Study range: enum_clinicalDataSourceType required: true","title":"Slot: Clinical Data Source Type (clinicalDataSourceType)"},{"location":"clinicalDataSourceType/#slot-clinical-data-source-type-clinicaldatasourcetype","text":"Source(s) of data collected from study participants; pipe-separated if multiple URI: include:clinicalDataSourceType","title":"Slot: Clinical Data Source Type (clinicalDataSourceType)"},{"location":"clinicalDataSourceType/#applicable-classes","text":"Name Description Modifies Slot Study General information about the study no","title":"Applicable Classes"},{"location":"clinicalDataSourceType/#properties","text":"Range: EnumClinicalDataSourceType Multivalued: True Required: True","title":"Properties"},{"location":"clinicalDataSourceType/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"clinicalDataSourceType/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"clinicalDataSourceType/#linkml-source","text":"name: clinicalDataSourceType definition_uri: include:clinicalDataSourceType description: Source(s) of data collected from study participants; pipe-separated if multiple title: Clinical Data Source Type from_schema: https://w3id.org/include rank: 1000 multivalued: true alias: clinicalDataSourceType domain_of: - Study range: enum_clinicalDataSourceType required: true","title":"LinkML Source"},{"location":"collectionExternalId/","text":"Slot: Collection External ID (collectionExternalId) Identifier for the eldest sample in a lineage of processed, pooled, or aliquoted samples - typically the material actually collected from the Participant. This may be the same as Parent Sample ID or Sample ID (if no processing was performed). Assigned by data contributor. URI: include:collectionExternalId Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: collectionExternalId definition_uri: include:collectionExternalId description: Identifier for the eldest sample in a lineage of processed, pooled, or aliquoted samples - typically the material actually collected from the Participant. This may be the same as Parent Sample ID or Sample ID (if no processing was performed). Assigned by data contributor. title: Collection External ID from_schema: https://w3id.org/include rank: 1000 alias: collectionExternalId domain_of: - Biospecimen range: string","title":"Slot: Collection External ID (collectionExternalId)"},{"location":"collectionExternalId/#slot-collection-external-id-collectionexternalid","text":"Identifier for the eldest sample in a lineage of processed, pooled, or aliquoted samples - typically the material actually collected from the Participant. This may be the same as Parent Sample ID or Sample ID (if no processing was performed). Assigned by data contributor. URI: include:collectionExternalId","title":"Slot: Collection External ID (collectionExternalId)"},{"location":"collectionExternalId/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"collectionExternalId/#properties","text":"Range: String","title":"Properties"},{"location":"collectionExternalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"collectionExternalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"collectionExternalId/#linkml-source","text":"name: collectionExternalId definition_uri: include:collectionExternalId description: Identifier for the eldest sample in a lineage of processed, pooled, or aliquoted samples - typically the material actually collected from the Participant. This may be the same as Parent Sample ID or Sample ID (if no processing was performed). Assigned by data contributor. title: Collection External ID from_schema: https://w3id.org/include rank: 1000 alias: collectionExternalId domain_of: - Biospecimen range: string","title":"LinkML Source"},{"location":"collectionGlobalId/","text":"Slot: Collection Global ID (collectionGlobalId) INCLUDE global identifier for the eldest sample in a lineage, assigned by DCC URI: include:collectionGlobalId Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: collectionGlobalId definition_uri: include:collectionGlobalId description: INCLUDE global identifier for the eldest sample in a lineage, assigned by DCC title: Collection Global ID from_schema: https://w3id.org/include rank: 1000 alias: collectionGlobalId domain_of: - Biospecimen range: string","title":"Slot: Collection Global ID (collectionGlobalId)"},{"location":"collectionGlobalId/#slot-collection-global-id-collectionglobalid","text":"INCLUDE global identifier for the eldest sample in a lineage, assigned by DCC URI: include:collectionGlobalId","title":"Slot: Collection Global ID (collectionGlobalId)"},{"location":"collectionGlobalId/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"collectionGlobalId/#properties","text":"Range: String","title":"Properties"},{"location":"collectionGlobalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"collectionGlobalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"collectionGlobalId/#linkml-source","text":"name: collectionGlobalId definition_uri: include:collectionGlobalId description: INCLUDE global identifier for the eldest sample in a lineage, assigned by DCC title: Collection Global ID from_schema: https://w3id.org/include rank: 1000 alias: collectionGlobalId domain_of: - Biospecimen range: string","title":"LinkML Source"},{"location":"collectionSampleType/","text":"Slot: Collection Sample Type (collectionSampleType) Type of biological material comprising the Collected Sample (e.g. Whole blood, Not reported, Saliva, Derived cell line) URI: include:collectionSampleType Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: collectionSampleType definition_uri: include:collectionSampleType description: Type of biological material comprising the Collected Sample (e.g. Whole blood, Not reported, Saliva, Derived cell line) title: Collection Sample Type from_schema: https://w3id.org/include rank: 1000 alias: collectionSampleType domain_of: - Biospecimen range: string","title":"Slot: Collection Sample Type (collectionSampleType)"},{"location":"collectionSampleType/#slot-collection-sample-type-collectionsampletype","text":"Type of biological material comprising the Collected Sample (e.g. Whole blood, Not reported, Saliva, Derived cell line) URI: include:collectionSampleType","title":"Slot: Collection Sample Type (collectionSampleType)"},{"location":"collectionSampleType/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"collectionSampleType/#properties","text":"Range: String","title":"Properties"},{"location":"collectionSampleType/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"collectionSampleType/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"collectionSampleType/#linkml-source","text":"name: collectionSampleType definition_uri: include:collectionSampleType description: Type of biological material comprising the Collected Sample (e.g. Whole blood, Not reported, Saliva, Derived cell line) title: Collection Sample Type from_schema: https://w3id.org/include rank: 1000 alias: collectionSampleType domain_of: - Biospecimen range: string","title":"LinkML Source"},{"location":"concentration/","text":"Slot: Concentration (concentration) Concentration of sample in container URI: include:concentration Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: Float Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: concentration definition_uri: include:concentration description: Concentration of sample in container title: Concentration from_schema: https://w3id.org/include rank: 1000 alias: concentration domain_of: - Biospecimen range: float","title":"Slot: Concentration (concentration)"},{"location":"concentration/#slot-concentration-concentration","text":"Concentration of sample in container URI: include:concentration","title":"Slot: Concentration (concentration)"},{"location":"concentration/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"concentration/#properties","text":"Range: Float","title":"Properties"},{"location":"concentration/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"concentration/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"concentration/#linkml-source","text":"name: concentration definition_uri: include:concentration description: Concentration of sample in container title: Concentration from_schema: https://w3id.org/include rank: 1000 alias: concentration domain_of: - Biospecimen range: float","title":"LinkML Source"},{"location":"concentrationUnit/","text":"Slot: Concentration Unit (concentrationUnit) Unit of sample concentration URI: include:concentrationUnit Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: concentrationUnit definition_uri: include:concentrationUnit description: Unit of sample concentration title: Concentration Unit from_schema: https://w3id.org/include rank: 1000 alias: concentrationUnit domain_of: - Biospecimen range: string","title":"Slot: Concentration Unit (concentrationUnit)"},{"location":"concentrationUnit/#slot-concentration-unit-concentrationunit","text":"Unit of sample concentration URI: include:concentrationUnit","title":"Slot: Concentration Unit (concentrationUnit)"},{"location":"concentrationUnit/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"concentrationUnit/#properties","text":"Range: String","title":"Properties"},{"location":"concentrationUnit/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"concentrationUnit/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"concentrationUnit/#linkml-source","text":"name: concentrationUnit definition_uri: include:concentrationUnit description: Unit of sample concentration title: Concentration Unit from_schema: https://w3id.org/include rank: 1000 alias: concentrationUnit domain_of: - Biospecimen range: string","title":"LinkML Source"},{"location":"conditionDataSource/","text":"Slot: Condition Data Source (conditionDataSource) Whether Condition information was obtained by the investigator or reported by participant/family member URI: include:conditionDataSource Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: EnumConditionDataSource Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: conditionDataSource definition_uri: include:conditionDataSource description: Whether Condition information was obtained by the investigator or reported by participant/family member title: Condition Data Source from_schema: https://w3id.org/include rank: 1000 alias: conditionDataSource domain_of: - Condition range: enum_conditionDataSource","title":"Slot: Condition Data Source (conditionDataSource)"},{"location":"conditionDataSource/#slot-condition-data-source-conditiondatasource","text":"Whether Condition information was obtained by the investigator or reported by participant/family member URI: include:conditionDataSource","title":"Slot: Condition Data Source (conditionDataSource)"},{"location":"conditionDataSource/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"conditionDataSource/#properties","text":"Range: EnumConditionDataSource","title":"Properties"},{"location":"conditionDataSource/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"conditionDataSource/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"conditionDataSource/#linkml-source","text":"name: conditionDataSource definition_uri: include:conditionDataSource description: Whether Condition information was obtained by the investigator or reported by participant/family member title: Condition Data Source from_schema: https://w3id.org/include rank: 1000 alias: conditionDataSource domain_of: - Condition range: enum_conditionDataSource","title":"LinkML Source"},{"location":"conditionInterpretation/","text":"Slot: Condition Interpretation (conditionInterpretation) Whether Condition was observed or not URI: include:conditionInterpretation Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: EnumConditionInterpretation Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: conditionInterpretation definition_uri: include:conditionInterpretation description: Whether Condition was observed or not title: Condition Interpretation from_schema: https://w3id.org/include rank: 1000 alias: conditionInterpretation domain_of: - Condition range: enum_conditionInterpretation","title":"Slot: Condition Interpretation (conditionInterpretation)"},{"location":"conditionInterpretation/#slot-condition-interpretation-conditioninterpretation","text":"Whether Condition was observed or not URI: include:conditionInterpretation","title":"Slot: Condition Interpretation (conditionInterpretation)"},{"location":"conditionInterpretation/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"conditionInterpretation/#properties","text":"Range: EnumConditionInterpretation","title":"Properties"},{"location":"conditionInterpretation/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"conditionInterpretation/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"conditionInterpretation/#linkml-source","text":"name: conditionInterpretation definition_uri: include:conditionInterpretation description: Whether Condition was observed or not title: Condition Interpretation from_schema: https://w3id.org/include rank: 1000 alias: conditionInterpretation domain_of: - Condition range: enum_conditionInterpretation","title":"LinkML Source"},{"location":"conditionMeasureSourceText/","text":"Slot: Condition or Measure Source Text (conditionMeasureSourceText) Co-occurring Condition (phenotype or diagnosis) or Measure (observation with numeric value), as described by data contributor. The Down Syndrome Genetic Diagnosis will be rolled into this field. URI: include:conditionMeasureSourceText Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: NONE Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: conditionMeasureSourceText definition_uri: include:conditionMeasureSourceText description: Co-occurring Condition (phenotype or diagnosis) or Measure (observation with numeric value), as described by data contributor. The Down Syndrome Genetic Diagnosis will be rolled into this field. title: Condition or Measure Source Text from_schema: https://w3id.org/include rank: 1000 alias: conditionMeasureSourceText domain_of: - Condition","title":"Slot: Condition or Measure Source Text (conditionMeasureSourceText)"},{"location":"conditionMeasureSourceText/#slot-condition-or-measure-source-text-conditionmeasuresourcetext","text":"Co-occurring Condition (phenotype or diagnosis) or Measure (observation with numeric value), as described by data contributor. The Down Syndrome Genetic Diagnosis will be rolled into this field. URI: include:conditionMeasureSourceText","title":"Slot: Condition or Measure Source Text (conditionMeasureSourceText)"},{"location":"conditionMeasureSourceText/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"conditionMeasureSourceText/#properties","text":"Range: NONE","title":"Properties"},{"location":"conditionMeasureSourceText/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"conditionMeasureSourceText/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"conditionMeasureSourceText/#linkml-source","text":"name: conditionMeasureSourceText definition_uri: include:conditionMeasureSourceText description: Co-occurring Condition (phenotype or diagnosis) or Measure (observation with numeric value), as described by data contributor. The Down Syndrome Genetic Diagnosis will be rolled into this field. title: Condition or Measure Source Text from_schema: https://w3id.org/include rank: 1000 alias: conditionMeasureSourceText domain_of: - Condition","title":"LinkML Source"},{"location":"conditionStatus/","text":"Slot: Condition Status (conditionStatus) Whether the Condition is ongoing, has been resolved, or this is a general history of the condition without known dates URI: include:conditionStatus Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: EnumConditionStatus Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: conditionStatus definition_uri: include:conditionStatus description: Whether the Condition is ongoing, has been resolved, or this is a general history of the condition without known dates title: Condition Status from_schema: https://w3id.org/include rank: 1000 alias: conditionStatus domain_of: - Condition range: enum_conditionStatus","title":"Slot: Condition Status (conditionStatus)"},{"location":"conditionStatus/#slot-condition-status-conditionstatus","text":"Whether the Condition is ongoing, has been resolved, or this is a general history of the condition without known dates URI: include:conditionStatus","title":"Slot: Condition Status (conditionStatus)"},{"location":"conditionStatus/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"conditionStatus/#properties","text":"Range: EnumConditionStatus","title":"Properties"},{"location":"conditionStatus/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"conditionStatus/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"conditionStatus/#linkml-source","text":"name: conditionStatus definition_uri: include:conditionStatus description: Whether the Condition is ongoing, has been resolved, or this is a general history of the condition without known dates title: Condition Status from_schema: https://w3id.org/include rank: 1000 alias: conditionStatus domain_of: - Condition range: enum_conditionStatus","title":"LinkML Source"},{"location":"containerAvailability/","text":"Slot: Container Availability (containerAvailability) Whether or not the container is potentially available for sharing through the Virtual Biorepository URI: include:containerAvailability Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: EnumContainerAvailability Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: containerAvailability definition_uri: include:containerAvailability description: Whether or not the container is potentially available for sharing through the Virtual Biorepository title: Container Availability from_schema: https://w3id.org/include rank: 1000 alias: containerAvailability domain_of: - Biospecimen range: enum_containerAvailability","title":"Slot: Container Availability (containerAvailability)"},{"location":"containerAvailability/#slot-container-availability-containeravailability","text":"Whether or not the container is potentially available for sharing through the Virtual Biorepository URI: include:containerAvailability","title":"Slot: Container Availability (containerAvailability)"},{"location":"containerAvailability/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"containerAvailability/#properties","text":"Range: EnumContainerAvailability","title":"Properties"},{"location":"containerAvailability/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"containerAvailability/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"containerAvailability/#linkml-source","text":"name: containerAvailability definition_uri: include:containerAvailability description: Whether or not the container is potentially available for sharing through the Virtual Biorepository title: Container Availability from_schema: https://w3id.org/include rank: 1000 alias: containerAvailability domain_of: - Biospecimen range: enum_containerAvailability","title":"LinkML Source"},{"location":"containerExternalId/","text":"Slot: Container External ID (containerExternalId) Identifier for specific container/aliquot of sample, assigned by data contributor. For example, distinct aliquots of a sample will have the same Sample ID but different Container IDs. URI: include:containerExternalId Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: containerExternalId definition_uri: include:containerExternalId description: Identifier for specific container/aliquot of sample, assigned by data contributor. For example, distinct aliquots of a sample will have the same Sample ID but different Container IDs. title: Container External ID from_schema: https://w3id.org/include rank: 1000 alias: containerExternalId domain_of: - Biospecimen range: string","title":"Slot: Container External ID (containerExternalId)"},{"location":"containerExternalId/#slot-container-external-id-containerexternalid","text":"Identifier for specific container/aliquot of sample, assigned by data contributor. For example, distinct aliquots of a sample will have the same Sample ID but different Container IDs. URI: include:containerExternalId","title":"Slot: Container External ID (containerExternalId)"},{"location":"containerExternalId/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"containerExternalId/#properties","text":"Range: String","title":"Properties"},{"location":"containerExternalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"containerExternalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"containerExternalId/#linkml-source","text":"name: containerExternalId definition_uri: include:containerExternalId description: Identifier for specific container/aliquot of sample, assigned by data contributor. 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DataFile range: string","title":"LinkML Source"},{"location":"experimentalStrategy/","text":"Slot: Experimental Strategy (experimentalStrategy) Experimental method used to obtain data in file (e.g. Whole genome sequencing, RNAseq, Multiplex immunoassay, Mass spec metabolomics) URI: include:experimentalStrategy Applicable Classes Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: experimentalStrategy definition_uri: include:experimentalStrategy description: Experimental method used to obtain data in file (e.g. Whole genome sequencing, RNAseq, Multiplex immunoassay, Mass spec metabolomics) title: Experimental Strategy from_schema: https://w3id.org/include rank: 1000 alias: experimentalStrategy domain_of: - DataFile range: string","title":"Slot: Experimental Strategy (experimentalStrategy)"},{"location":"experimentalStrategy/#slot-experimental-strategy-experimentalstrategy","text":"Experimental method used to obtain data in file (e.g. Whole genome sequencing, RNAseq, Multiplex immunoassay, Mass spec metabolomics) URI: include:experimentalStrategy","title":"Slot: Experimental Strategy (experimentalStrategy)"},{"location":"experimentalStrategy/#applicable-classes","text":"Name Description Modifies Slot DataFile A DataFile Associated with a Participant or Study or Biospecimen no","title":"Applicable Classes"},{"location":"experimentalStrategy/#properties","text":"Range: String","title":"Properties"},{"location":"experimentalStrategy/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"experimentalStrategy/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"experimentalStrategy/#linkml-source","text":"name: experimentalStrategy definition_uri: include:experimentalStrategy description: Experimental method used to obtain data in file (e.g. Whole genome sequencing, RNAseq, Multiplex immunoassay, Mass spec metabolomics) title: Experimental Strategy from_schema: https://w3id.org/include rank: 1000 alias: experimentalStrategy domain_of: - DataFile range: string","title":"LinkML Source"},{"location":"familyId/","text":"Slot: Family ID (familyId) Unique identifer for family to which Participant belongs, assigned by data contributor URI: include:familyId Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: familyId definition_uri: include:familyId description: Unique identifer for family to which Participant belongs, assigned by data contributor title: Family ID from_schema: https://w3id.org/include rank: 1000 alias: familyId domain_of: - Participant range: string","title":"Slot: Family ID (familyId)"},{"location":"familyId/#slot-family-id-familyid","text":"Unique identifer for family to which Participant belongs, assigned by data contributor URI: include:familyId","title":"Slot: Family ID (familyId)"},{"location":"familyId/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"familyId/#properties","text":"Range: String","title":"Properties"},{"location":"familyId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"familyId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"familyId/#linkml-source","text":"name: familyId definition_uri: include:familyId description: Unique identifer for family to which Participant belongs, assigned by data contributor title: Family ID from_schema: https://w3id.org/include rank: 1000 alias: familyId domain_of: - 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Condition range: integer","title":"LinkML Source"},{"location":"mondoCode/","text":"Slot: MONDO Code (mondoCode) Code for Condition in the Mondo Disease Ontology (Mondo) URI: include:mondoCode Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: mondoCode definition_uri: include:mondoCode description: Code for Condition in the Mondo Disease Ontology (Mondo) title: MONDO Code from_schema: https://w3id.org/include rank: 1000 alias: mondoCode domain_of: - Condition range: string","title":"Slot: MONDO Code (mondoCode)"},{"location":"mondoCode/#slot-mondo-code-mondocode","text":"Code for Condition in the Mondo Disease Ontology (Mondo) URI: include:mondoCode","title":"Slot: MONDO Code (mondoCode)"},{"location":"mondoCode/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"mondoCode/#properties","text":"Range: String","title":"Properties"},{"location":"mondoCode/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"mondoCode/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"mondoCode/#linkml-source","text":"name: mondoCode definition_uri: include:mondoCode description: Code for Condition in the Mondo Disease Ontology (Mondo) title: MONDO Code from_schema: https://w3id.org/include rank: 1000 alias: mondoCode domain_of: - Condition range: string","title":"LinkML Source"},{"location":"mondoLabel/","text":"Slot: MONDO Label (mondoLabel) Label for Condition in the Mondo Disease Ontology (MONDO) URI: include:mondoLabel Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: mondoLabel definition_uri: include:mondoLabel description: Label for Condition in the Mondo Disease Ontology (MONDO) title: MONDO Label from_schema: https://w3id.org/include rank: 1000 alias: mondoLabel domain_of: - Condition range: string","title":"Slot: MONDO Label (mondoLabel)"},{"location":"mondoLabel/#slot-mondo-label-mondolabel","text":"Label for Condition in the Mondo Disease Ontology (MONDO) URI: include:mondoLabel","title":"Slot: MONDO Label (mondoLabel)"},{"location":"mondoLabel/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"mondoLabel/#properties","text":"Range: String","title":"Properties"},{"location":"mondoLabel/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"mondoLabel/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"mondoLabel/#linkml-source","text":"name: mondoLabel definition_uri: include:mondoLabel description: Label for Condition in the Mondo Disease Ontology (MONDO) title: MONDO Label from_schema: https://w3id.org/include rank: 1000 alias: mondoLabel domain_of: - Condition range: string","title":"LinkML Source"},{"location":"motherId/","text":"Slot: Mother ID (motherId) Participant External ID for Participant's mother (NA if Participant is not the proband) URI: include:motherId Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: motherId definition_uri: include:motherId description: Participant External ID for Participant's mother (NA if Participant is not the proband) title: Mother ID from_schema: https://w3id.org/include rank: 1000 alias: motherId domain_of: - Participant range: string","title":"Slot: Mother ID (motherId)"},{"location":"motherId/#slot-mother-id-motherid","text":"Participant External ID for Participant's mother (NA if Participant is not the proband) URI: include:motherId","title":"Slot: Mother ID (motherId)"},{"location":"motherId/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"motherId/#properties","text":"Range: String","title":"Properties"},{"location":"motherId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"motherId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"motherId/#linkml-source","text":"name: motherId definition_uri: include:motherId description: Participant External ID for Participant's mother (NA if Participant is not the proband) title: Mother ID from_schema: https://w3id.org/include rank: 1000 alias: motherId domain_of: - Participant range: string","title":"LinkML Source"},{"location":"otherAccessAuthority/","text":"Slot: Other Access Authority (otherAccessAuthority) Email or URL for dataset's Access Authority, if not dbGaP URI: include:otherAccessAuthority Applicable Classes Name Description Modifies Slot Dataset Information about a specific grouping of data files no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: otherAccessAuthority definition_uri: include:otherAccessAuthority description: Email or URL for dataset's Access Authority, if not dbGaP title: Other Access Authority from_schema: https://w3id.org/include rank: 1000 alias: otherAccessAuthority domain_of: - Dataset range: string","title":"Slot: Other Access Authority (otherAccessAuthority)"},{"location":"otherAccessAuthority/#slot-other-access-authority-otheraccessauthority","text":"Email or URL for dataset's Access Authority, if not dbGaP URI: include:otherAccessAuthority","title":"Slot: Other Access Authority (otherAccessAuthority)"},{"location":"otherAccessAuthority/#applicable-classes","text":"Name Description Modifies Slot Dataset Information about a specific grouping of data files no","title":"Applicable Classes"},{"location":"otherAccessAuthority/#properties","text":"Range: String","title":"Properties"},{"location":"otherAccessAuthority/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"otherAccessAuthority/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"otherAccessAuthority/#linkml-source","text":"name: otherAccessAuthority definition_uri: include:otherAccessAuthority description: Email or URL for dataset's Access Authority, if not dbGaP title: Other Access Authority from_schema: https://w3id.org/include rank: 1000 alias: otherAccessAuthority domain_of: - Dataset range: string","title":"LinkML Source"},{"location":"otherCode/","text":"Slot: Other Code (otherCode) Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) URI: include:otherCode Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: otherCode definition_uri: include:otherCode description: Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Code from_schema: https://w3id.org/include rank: 1000 alias: otherCode domain_of: - Condition range: string","title":"Slot: Other Code (otherCode)"},{"location":"otherCode/#slot-other-code-othercode","text":"Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) URI: include:otherCode","title":"Slot: Other Code (otherCode)"},{"location":"otherCode/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"otherCode/#properties","text":"Range: String","title":"Properties"},{"location":"otherCode/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"otherCode/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"otherCode/#linkml-source","text":"name: otherCode definition_uri: include:otherCode description: Code for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Code from_schema: https://w3id.org/include rank: 1000 alias: otherCode domain_of: - Condition range: string","title":"LinkML Source"},{"location":"otherFamilyMemberId/","text":"Slot: Other Family Member ID (otherFamilyMemberId) Participant External ID for Participant's other family members (NA if Participant is not the proband) URI: include:otherFamilyMemberId Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: otherFamilyMemberId definition_uri: include:otherFamilyMemberId description: Participant External ID for Participant's other family members (NA if Participant is not the proband) title: Other Family Member ID from_schema: https://w3id.org/include rank: 1000 alias: otherFamilyMemberId domain_of: - Participant range: string","title":"Slot: Other Family Member ID (otherFamilyMemberId)"},{"location":"otherFamilyMemberId/#slot-other-family-member-id-otherfamilymemberid","text":"Participant External ID for Participant's other family members (NA if Participant is not the proband) URI: include:otherFamilyMemberId","title":"Slot: Other Family Member ID (otherFamilyMemberId)"},{"location":"otherFamilyMemberId/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"otherFamilyMemberId/#properties","text":"Range: String","title":"Properties"},{"location":"otherFamilyMemberId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"otherFamilyMemberId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"otherFamilyMemberId/#linkml-source","text":"name: otherFamilyMemberId definition_uri: include:otherFamilyMemberId description: Participant External ID for Participant's other family members (NA if Participant is not the proband) title: Other Family Member ID from_schema: https://w3id.org/include rank: 1000 alias: otherFamilyMemberId domain_of: - Participant range: string","title":"LinkML Source"},{"location":"otherLabel/","text":"Slot: Other Label (otherLabel) Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) URI: include:otherLabel Applicable Classes Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: otherLabel definition_uri: include:otherLabel description: Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Label from_schema: https://w3id.org/include rank: 1000 alias: otherLabel domain_of: - Condition range: string","title":"Slot: Other Label (otherLabel)"},{"location":"otherLabel/#slot-other-label-otherlabel","text":"Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) URI: include:otherLabel","title":"Slot: Other Label (otherLabel)"},{"location":"otherLabel/#applicable-classes","text":"Name Description Modifies Slot Condition Co-occurring conditions and other observations for the participant no","title":"Applicable Classes"},{"location":"otherLabel/#properties","text":"Range: String","title":"Properties"},{"location":"otherLabel/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"otherLabel/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"otherLabel/#linkml-source","text":"name: otherLabel definition_uri: include:otherLabel description: Label for Condition in another ontology (if no match in HPO, MONDO, or MAXO) title: Other Label from_schema: https://w3id.org/include rank: 1000 alias: otherLabel domain_of: - Condition range: string","title":"LinkML Source"},{"location":"otherRepository/","text":"Slot: Other Repository (otherRepository) URL if dataset is already deposited in a public repository other than dbGaP (e.g. LONI, Metabolomics Workbench, etc.) URI: include:otherRepository Applicable Classes Name Description Modifies Slot Dataset Information about a specific grouping of data files no Properties Range: Uri Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: otherRepository definition_uri: include:otherRepository description: URL if dataset is already deposited in a public repository other than dbGaP (e.g. LONI, Metabolomics Workbench, etc.) title: Other Repository from_schema: https://w3id.org/include rank: 1000 alias: otherRepository domain_of: - Dataset range: uri","title":"Slot: Other Repository (otherRepository)"},{"location":"otherRepository/#slot-other-repository-otherrepository","text":"URL if dataset is already deposited in a public repository other than dbGaP (e.g. LONI, Metabolomics Workbench, etc.) URI: include:otherRepository","title":"Slot: Other Repository (otherRepository)"},{"location":"otherRepository/#applicable-classes","text":"Name Description Modifies Slot Dataset Information about a specific grouping of data files no","title":"Applicable Classes"},{"location":"otherRepository/#properties","text":"Range: Uri","title":"Properties"},{"location":"otherRepository/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"otherRepository/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"otherRepository/#linkml-source","text":"name: otherRepository definition_uri: include:otherRepository description: URL if dataset is already deposited in a public repository other than dbGaP (e.g. LONI, Metabolomics Workbench, etc.) title: Other Repository from_schema: https://w3id.org/include rank: 1000 alias: otherRepository domain_of: - Dataset range: uri","title":"LinkML Source"},{"location":"outcomesVitalStatus/","text":"Slot: Outcomes Vital Status (outcomesVitalStatus) Whether participant is alive or dead URI: include:outcomesVitalStatus Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: EnumVitalStatus Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: outcomesVitalStatus definition_uri: include:outcomesVitalStatus description: Whether participant is alive or dead title: Outcomes Vital Status from_schema: https://w3id.org/include rank: 1000 alias: outcomesVitalStatus domain_of: - Participant range: enum_vital_status","title":"Slot: Outcomes Vital Status (outcomesVitalStatus)"},{"location":"outcomesVitalStatus/#slot-outcomes-vital-status-outcomesvitalstatus","text":"Whether participant is alive or dead URI: include:outcomesVitalStatus","title":"Slot: Outcomes Vital Status (outcomesVitalStatus)"},{"location":"outcomesVitalStatus/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"outcomesVitalStatus/#properties","text":"Range: EnumVitalStatus","title":"Properties"},{"location":"outcomesVitalStatus/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"outcomesVitalStatus/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"outcomesVitalStatus/#linkml-source","text":"name: outcomesVitalStatus definition_uri: include:outcomesVitalStatus description: Whether participant is alive or dead title: Outcomes Vital Status from_schema: https://w3id.org/include rank: 1000 alias: outcomesVitalStatus domain_of: - Participant range: enum_vital_status","title":"LinkML Source"},{"location":"parentSampleExternalId/","text":"Slot: Parent Sample External ID (parentSampleExternalId) Identifier for the direct parent from which Sample was derived, processed, pooled, etc. (if applicable); assigned by data contributor URI: include:parentSampleExternalId Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: parentSampleExternalId definition_uri: include:parentSampleExternalId description: Identifier for the direct parent from which Sample was derived, processed, pooled, etc. (if applicable); assigned by data contributor title: Parent Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleExternalId domain_of: - Biospecimen range: string","title":"Slot: Parent Sample External ID (parentSampleExternalId)"},{"location":"parentSampleExternalId/#slot-parent-sample-external-id-parentsampleexternalid","text":"Identifier for the direct parent from which Sample was derived, processed, pooled, etc. (if applicable); assigned by data contributor URI: include:parentSampleExternalId","title":"Slot: Parent Sample External ID (parentSampleExternalId)"},{"location":"parentSampleExternalId/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"parentSampleExternalId/#properties","text":"Range: String","title":"Properties"},{"location":"parentSampleExternalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"parentSampleExternalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"parentSampleExternalId/#linkml-source","text":"name: parentSampleExternalId definition_uri: include:parentSampleExternalId description: Identifier for the direct parent from which Sample was derived, processed, pooled, etc. (if applicable); assigned by data contributor title: Parent Sample External ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleExternalId domain_of: - Biospecimen range: string","title":"LinkML Source"},{"location":"parentSampleGlobalId/","text":"Slot: Parent Sample Global ID (parentSampleGlobalId) INCLUDE global identifier for the direct parent from which Sample was derived, assigned by DCC URI: include:parentSampleGlobalId Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: parentSampleGlobalId definition_uri: include:parentSampleGlobalId description: INCLUDE global identifier for the direct parent from which Sample was derived, assigned by DCC title: Parent Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleGlobalId domain_of: - Biospecimen range: string","title":"Slot: Parent Sample Global ID (parentSampleGlobalId)"},{"location":"parentSampleGlobalId/#slot-parent-sample-global-id-parentsampleglobalid","text":"INCLUDE global identifier for the direct parent from which Sample was derived, assigned by DCC URI: include:parentSampleGlobalId","title":"Slot: Parent Sample Global ID (parentSampleGlobalId)"},{"location":"parentSampleGlobalId/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"parentSampleGlobalId/#properties","text":"Range: String","title":"Properties"},{"location":"parentSampleGlobalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"parentSampleGlobalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"parentSampleGlobalId/#linkml-source","text":"name: parentSampleGlobalId definition_uri: include:parentSampleGlobalId description: INCLUDE global identifier for the direct parent from which Sample was derived, assigned by DCC title: Parent Sample Global ID from_schema: https://w3id.org/include rank: 1000 alias: parentSampleGlobalId domain_of: - Biospecimen range: string","title":"LinkML Source"},{"location":"parentSampleType/","text":"Slot: Parent Sample Type (parentSampleType) Type of biological material comprising the Parent Sample (e.g. Peripheral Whole Blood, Derived Cell Line, Saliva, Whole blood, WBCs) URI: include:parentSampleType Applicable Classes Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no Properties Range: String Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: parentSampleType definition_uri: include:parentSampleType description: Type of biological material comprising the Parent Sample (e.g. Peripheral Whole Blood, Derived Cell Line, Saliva, Whole blood, WBCs) title: Parent Sample Type from_schema: https://w3id.org/include rank: 1000 alias: parentSampleType domain_of: - Biospecimen range: string","title":"Slot: Parent Sample Type (parentSampleType)"},{"location":"parentSampleType/#slot-parent-sample-type-parentsampletype","text":"Type of biological material comprising the Parent Sample (e.g. Peripheral Whole Blood, Derived Cell Line, Saliva, Whole blood, WBCs) URI: include:parentSampleType","title":"Slot: Parent Sample Type (parentSampleType)"},{"location":"parentSampleType/#applicable-classes","text":"Name Description Modifies Slot Biospecimen A Biospecimen Collected from A Participant no","title":"Applicable Classes"},{"location":"parentSampleType/#properties","text":"Range: String","title":"Properties"},{"location":"parentSampleType/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"parentSampleType/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"parentSampleType/#linkml-source","text":"name: parentSampleType definition_uri: include:parentSampleType description: Type of biological material comprising the Parent Sample (e.g. Peripheral Whole Blood, Derived Cell Line, Saliva, Whole blood, WBCs) title: Parent Sample Type from_schema: https://w3id.org/include rank: 1000 alias: parentSampleType domain_of: - Biospecimen range: string","title":"LinkML Source"},{"location":"participantExternalId/","text":"Slot: Participant External ID (participantExternalId) Unique, de-identified identifier for the participant, assigned by data contributor. External IDs must be two steps removed from personal information in the study records. URI: include:participantExternalId Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: participantExternalId definition_uri: include:participantExternalId description: Unique, de-identified identifier for the participant, assigned by data contributor. External IDs must be two steps removed from personal information in the study records. title: Participant External ID from_schema: https://w3id.org/include rank: 1000 alias: participantExternalId domain_of: - Participant range: string required: true","title":"Slot: Participant External ID (participantExternalId)"},{"location":"participantExternalId/#slot-participant-external-id-participantexternalid","text":"Unique, de-identified identifier for the participant, assigned by data contributor. External IDs must be two steps removed from personal information in the study records. URI: include:participantExternalId","title":"Slot: Participant External ID (participantExternalId)"},{"location":"participantExternalId/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"participantExternalId/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"participantExternalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"participantExternalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"participantExternalId/#linkml-source","text":"name: participantExternalId definition_uri: include:participantExternalId description: Unique, de-identified identifier for the participant, assigned by data contributor. External IDs must be two steps removed from personal information in the study records. title: Participant External ID from_schema: https://w3id.org/include rank: 1000 alias: participantExternalId domain_of: - Participant range: string required: true","title":"LinkML Source"},{"location":"participantGlobalId/","text":"Slot: Participant Global ID (participantGlobalId) Unique INCLUDE global identifier for the participant, assigned by DCC URI: include:participantGlobalId Applicable Classes Name Description Modifies Slot Participant Demographic and clinical information about the participant no Properties Range: String Required: True Identifier and Mapping Information Schema Source from schema: https://w3id.org/include LinkML Source name: participantGlobalId definition_uri: include:participantGlobalId description: Unique INCLUDE global identifier for the participant, assigned by DCC title: Participant Global ID from_schema: https://w3id.org/include rank: 1000 alias: participantGlobalId domain_of: - Participant range: string required: true","title":"Slot: Participant Global ID (participantGlobalId)"},{"location":"participantGlobalId/#slot-participant-global-id-participantglobalid","text":"Unique INCLUDE global identifier for the participant, assigned by DCC URI: include:participantGlobalId","title":"Slot: Participant Global ID (participantGlobalId)"},{"location":"participantGlobalId/#applicable-classes","text":"Name Description Modifies Slot Participant Demographic and clinical information about the participant no","title":"Applicable Classes"},{"location":"participantGlobalId/#properties","text":"Range: String Required: True","title":"Properties"},{"location":"participantGlobalId/#identifier-and-mapping-information","text":"","title":"Identifier and Mapping Information"},{"location":"participantGlobalId/#schema-source","text":"from schema: https://w3id.org/include","title":"Schema Source"},{"location":"participantGlobalId/#linkml-source","text":"name: participantGlobalId definition_uri: include:participantGlobalId description: Unique INCLUDE global identifier for the participant, assigned by DCC title: Participant Global ID from_schema: https://w3id.org/include rank: 1000 alias: participantGlobalId domain_of: - 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2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/Time/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/Uri/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/Uriorcurie/ - 2024-01-16 + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/accessLimitations/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/accessRequirements/ + 2024-03-25 daily https://include-dcc.github.io/include_linkml/accessUrl/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/ageAtBiospecimenCollection/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/ageAtConditionMeasureObservation/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/ageAtFirstPatientEngagement/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/ageAtLastVitalStatus/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/biospecimenStorage/ - 2024-01-16 + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/clinicalDataSourceType/ + 2024-03-25 daily https://include-dcc.github.io/include_linkml/collectionExternalId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/collectionGlobalId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/collectionSampleType/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/concentration/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/concentrationUnit/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/conditionDataSource/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/conditionInterpretation/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/conditionMeasureSourceText/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/conditionStatus/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/containerAvailability/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/containerExternalId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/containerGlobalId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/dataAccess/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/dataCategory/ - 2024-01-16 + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/dataCollectionEndYear/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/dataCollectionStartYear/ + 2024-03-25 daily https://include-dcc.github.io/include_linkml/dataType/ - 2024-01-16 + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/datasetDataCategory/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/datasetDataType/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/datasetDbgap/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/datasetExpectedNumberOfParticipants/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/datasetExperimentalPlatform/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/datasetExperimentalStrategy/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/datasetExternalId/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/datasetGlobalId/ + 2024-03-25 daily - https://include-dcc.github.io/include_linkml/dbgap/ - 2024-01-16 + https://include-dcc.github.io/include_linkml/datasetName/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/datasetPublication/ + 2024-03-25 daily https://include-dcc.github.io/include_linkml/downSyndromeStatus/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/ethnicity/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/eventId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/eventType/ - 2024-01-16 + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/expectedDataCategory/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/expectedNumberOfFiles/ + 2024-03-25 daily https://include-dcc.github.io/include_linkml/experimentalPlatform/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/experimentalStrategy/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/familyId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/familyRelationship/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/familyType/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/fatherId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/fileExternalId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/fileFormat/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/fileGlobalId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/fileHash/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/fileName/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/fileSize/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/fileSizeUnit/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/firstPatientEngagementEvent/ - 2024-01-16 + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/guidType/ + 2024-03-25 daily https://include-dcc.github.io/include_linkml/hasBiospecimen/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/hasParticipant/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/hasStudy/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/hpoCode/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/hpoLabel/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/include-schema/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/laboratoryProcedure/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/maxoCode/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/maxoLabel/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/measureUnit/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/measureValue/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/mondoCode/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/mondoLabel/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/motherId/ - 2024-01-16 + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/otherAccessAuthority/ + 2024-03-25 daily https://include-dcc.github.io/include_linkml/otherCode/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/otherFamilyMemberId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/otherLabel/ - 2024-01-16 + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/otherRepository/ + 2024-03-25 daily https://include-dcc.github.io/include_linkml/outcomesVitalStatus/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/parentSampleExternalId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/parentSampleGlobalId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/parentSampleType/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/participantExternalId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/participantGlobalId/ - 2024-01-16 + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/participantLifespanStage/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/principalInvestigatorName/ + 2024-03-25 daily https://include-dcc.github.io/include_linkml/program/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/publicationDoi/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/race/ - 2024-01-16 + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/researchDomain/ + 2024-03-25 daily https://include-dcc.github.io/include_linkml/sampleAvailability/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/sampleExternalId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/sampleGlobalId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/sampleType/ - 2024-01-16 + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/selectionCriteria/ + 2024-03-25 daily https://include-dcc.github.io/include_linkml/sex/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/siblingId/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/studyCode/ - 2024-01-16 + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/studyContactEmail/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/studyContactInstitution/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/studyContactName/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/studyDbgap/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/studyDescription/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/studyDesign/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/studyExpectedNumberOfParticipants/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/studyPublication/ + 2024-03-25 + daily + + + https://include-dcc.github.io/include_linkml/studyTitle/ + 2024-03-25 daily - https://include-dcc.github.io/include_linkml/studyName/ - 2024-01-16 + https://include-dcc.github.io/include_linkml/studyWebsite/ + 2024-03-25 daily https://include-dcc.github.io/include_linkml/vbrEmail/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/vbrReadme/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/vbrUrl/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/volume/ - 2024-01-16 + 2024-03-25 daily https://include-dcc.github.io/include_linkml/volumeUnit/ - 2024-01-16 + 2024-03-25 daily \ No newline at end of file diff --git a/sitemap.xml.gz b/sitemap.xml.gz index 63caac3..fbf2493 100644 Binary files a/sitemap.xml.gz and b/sitemap.xml.gz differ diff --git a/studyCode/index.html b/studyCode/index.html index c001440..da9fe50 100644 --- a/studyCode/index.html +++ b/studyCode/index.html @@ -345,7 +345,7 @@

Slot: Study Code (studyCode)

-

Unique identifer for the study, assigned by DCC

+

Unique identifer for the study (generally a short acronym)

URI: include:studyCode

@@ -385,7 +385,7 @@

LinkML Source

name: studyCode
 definition_uri: include:studyCode
-description: Unique identifer for the study, assigned by DCC
+description: Unique identifer for the study (generally a short acronym)
 title: Study Code
 from_schema: https://w3id.org/include
 rank: 1000
diff --git a/studyContactEmail/index.html b/studyContactEmail/index.html
new file mode 100644
index 0000000..fd03344
--- /dev/null
+++ b/studyContactEmail/index.html
@@ -0,0 +1,450 @@
+
+
+
+  
+    
+      
+      
+      
+      
+      
+        
+      
+      
+      
+    
+    
+      
+        Slot: Study Contact Email (studyContactEmail) - INCLUDE V2 Data Model
+      
+    
+    
+      
+      
+        
+        
+        
+      
+      
+
+    
+    
+    
+      
+        
+        
+        
+        
+        
+      
+    
+    
+    
+    
+      
+
+    
+    
+    
+  
+  
+  
+    
+    
+      
+    
+    
+    
+    
+    
+  
+    
+    
+      
+    
+    
+    
+    
+    
+ + + + Skip to content + + +
+
+ +
+ + + + +
+ + +
+ +
+ + + + + + +
+
+ + + +
+
+
+ + + + +
+
+
+ + + +
+
+
+ + + +
+
+
+ + + +
+
+ + + + + + + + + +

Slot: Study Contact Email (studyContactEmail)

+

Email address of contact person for this study; pipe-separated if multiple

+

URI: include:studyContactEmail

+ + +

Applicable Classes

+ + + + + + + + + + + + + + + +
NameDescriptionModifies Slot
StudyGeneral information about the studyno
+

Properties

+
    +
  • +

    Range: String

    +
  • +
  • +

    Multivalued: True

    +
  • +
  • +

    Required: True

    +
  • +
+

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: studyContactEmail
+definition_uri: include:studyContactEmail
+description: Email address of contact person for this study; pipe-separated if multiple
+title: Study Contact Email
+from_schema: https://w3id.org/include
+rank: 1000
+multivalued: true
+alias: studyContactEmail
+domain_of:
+- Study
+range: string
+required: true
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/studyContactInstitution/index.html b/studyContactInstitution/index.html new file mode 100644 index 0000000..acdded2 --- /dev/null +++ b/studyContactInstitution/index.html @@ -0,0 +1,450 @@ + + + + + + + + + + + + + + + + + + Slot: Study Contact Institution (studyContactInstitution) - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
+
+ +
+ + + + +
+ + +
+ +
+ + + + + + +
+
+ + + +
+
+
+ + + + +
+
+
+ + + +
+
+
+ + + +
+
+
+ + + +
+
+ + + + + + + + + +

Slot: Study Contact Institution (studyContactInstitution)

+

Institution of contact person for this study; pipe-separated if multiple

+

URI: include:studyContactInstitution

+ + +

Applicable Classes

+ + + + + + + + + + + + + + + +
NameDescriptionModifies Slot
StudyGeneral information about the studyno
+

Properties

+
    +
  • +

    Range: String

    +
  • +
  • +

    Multivalued: True

    +
  • +
  • +

    Required: True

    +
  • +
+

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: studyContactInstitution
+definition_uri: include:studyContactInstitution
+description: Institution of contact person for this study; pipe-separated if multiple
+title: Study Contact Institution
+from_schema: https://w3id.org/include
+rank: 1000
+multivalued: true
+alias: studyContactInstitution
+domain_of:
+- Study
+range: string
+required: true
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/studyContactName/index.html b/studyContactName/index.html new file mode 100644 index 0000000..760c97b --- /dev/null +++ b/studyContactName/index.html @@ -0,0 +1,450 @@ + + + + + + + + + + + + + + + + + + Slot: Study Contact Name (studyContactName) - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
+
+ +
+ + + + +
+ + +
+ +
+ + + + + + +
+
+ + + +
+
+
+ + + + +
+
+
+ + + +
+
+
+ + + +
+
+
+ + + +
+
+ + + + + + + + + +

Slot: Study Contact Name (studyContactName)

+

Name of contact person for this study; pipe-separated if multiple

+

URI: include:studyContactName

+ + +

Applicable Classes

+ + + + + + + + + + + + + + + +
NameDescriptionModifies Slot
StudyGeneral information about the studyno
+

Properties

+
    +
  • +

    Range: String

    +
  • +
  • +

    Multivalued: True

    +
  • +
  • +

    Required: True

    +
  • +
+

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: studyContactName
+definition_uri: include:studyContactName
+description: Name of contact person for this study; pipe-separated if multiple
+title: Study Contact Name
+from_schema: https://w3id.org/include
+rank: 1000
+multivalued: true
+alias: studyContactName
+domain_of:
+- Study
+range: string
+required: true
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/studyDbgap/index.html b/studyDbgap/index.html new file mode 100644 index 0000000..f3c273e --- /dev/null +++ b/studyDbgap/index.html @@ -0,0 +1,447 @@ + + + + + + + + + + + + + + + + + + Slot: Study dbGaP (studyDbgap) - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
+
+ +
+ + + + +
+ + +
+ +
+ + + + + + +
+
+ + + +
+
+
+ + + + +
+
+
+ + + +
+
+
+ + + +
+
+
+ + + +
+
+ + + + + + + + + +

Slot: Study dbGaP (studyDbgap)

+

dbGaP "phs" accession code(s) associated with this Study, either for access or informational purposes (pipe-separated if multiple)

+

URI: include:studyDbgap

+ + +

Applicable Classes

+ + + + + + + + + + + + + + + +
NameDescriptionModifies Slot
StudyGeneral information about the studyno
+

Properties

+
    +
  • +

    Range: String

    +
  • +
  • +

    Multivalued: True

    +
  • +
+

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: studyDbgap
+definition_uri: include:studyDbgap
+description: dbGaP "phs" accession code(s) associated with this Study, either for
+  access or informational purposes (pipe-separated if multiple)
+title: Study dbGaP
+from_schema: https://w3id.org/include
+rank: 1000
+multivalued: true
+alias: studyDbgap
+domain_of:
+- Study
+range: string
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/studyDescription/index.html b/studyDescription/index.html new file mode 100644 index 0000000..3057b6f --- /dev/null +++ b/studyDescription/index.html @@ -0,0 +1,447 @@ + + + + + + + + + + + + + + + + + + Slot: Study Description (studyDescription) - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
+
+ +
+ + + + +
+ + +
+ +
+ + + + + + +
+
+ + + +
+
+
+ + + + +
+
+
+ + + +
+
+
+ + + +
+
+
+ + + +
+
+ + + + + + + + + +

Slot: Study Description (studyDescription)

+

Brief description of the study (2-4 sentences). Should match description in https://includedcc.org/studies.

+

URI: include:studyDescription

+ + +

Applicable Classes

+ + + + + + + + + + + + + + + +
NameDescriptionModifies Slot
StudyGeneral information about the studyno
+

Properties

+
    +
  • +

    Range: String

    +
  • +
  • +

    Required: True

    +
  • +
+

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: studyDescription
+definition_uri: include:studyDescription
+description: Brief description of the study (2-4 sentences). Should match description
+  in https://includedcc.org/studies.
+title: Study Description
+from_schema: https://w3id.org/include
+rank: 1000
+alias: studyDescription
+domain_of:
+- Study
+range: string
+required: true
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/studyDesign/index.html b/studyDesign/index.html new file mode 100644 index 0000000..2864ff7 --- /dev/null +++ b/studyDesign/index.html @@ -0,0 +1,447 @@ + + + + + + + + + + + + + + + + + + Slot: Study Design (studyDesign) - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
+
+ +
+ + + + +
+ + +
+ +
+ + + + + + +
+
+ + + +
+
+
+ + + + +
+
+
+ + + +
+
+
+ + + +
+
+
+ + + +
+
+ + + + + + + + + +

Slot: Study Design (studyDesign)

+

Overall design of study, including whether it is longitudinal and whether family members/unrelated controls are also enrolled

+

URI: include:studyDesign

+ + +

Applicable Classes

+ + + + + + + + + + + + + + + +
NameDescriptionModifies Slot
StudyGeneral information about the studyno
+

Properties

+
    +
  • +

    Range: String

    +
  • +
  • +

    Required: True

    +
  • +
+

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: studyDesign
+definition_uri: include:studyDesign
+description: Overall design of study, including whether it is longitudinal and whether
+  family members/unrelated controls are also enrolled
+title: Study Design
+from_schema: https://w3id.org/include
+rank: 1000
+alias: studyDesign
+domain_of:
+- Study
+range: string
+required: true
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/studyExpectedNumberOfParticipants/index.html b/studyExpectedNumberOfParticipants/index.html new file mode 100644 index 0000000..8bd2c5d --- /dev/null +++ b/studyExpectedNumberOfParticipants/index.html @@ -0,0 +1,446 @@ + + + + + + + + + + + + + + + + + + Slot: Study Expected Number of Participants (studyExpectedNumberOfParticipants) - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
+
+ +
+ + + + +
+ + +
+ +
+ + + + + + +
+
+ + + +
+
+
+ + + + +
+
+
+ + + +
+
+
+ + + +
+
+
+ + + +
+
+ + + + + + + + + +

Slot: Study Expected Number of Participants (studyExpectedNumberOfParticipants)

+

Expected number of participants in this study

+

URI: include:studyExpectedNumberOfParticipants

+ + +

Applicable Classes

+ + + + + + + + + + + + + + + +
NameDescriptionModifies Slot
StudyGeneral information about the studyno
+

Properties

+
    +
  • +

    Range: Integer

    +
  • +
  • +

    Required: True

    +
  • +
+

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: studyExpectedNumberOfParticipants
+definition_uri: include:studyExpectedNumberOfParticipants
+description: Expected number of participants in this study
+title: Study Expected Number of Participants
+from_schema: https://w3id.org/include
+rank: 1000
+alias: studyExpectedNumberOfParticipants
+domain_of:
+- Study
+range: integer
+required: true
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/studyPublication/index.html b/studyPublication/index.html new file mode 100644 index 0000000..f1cdf35 --- /dev/null +++ b/studyPublication/index.html @@ -0,0 +1,447 @@ + + + + + + + + + + + + + + + + + + Slot: Study Publication (studyPublication) - INCLUDE V2 Data Model + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + Skip to content + + +
+
+ +
+ + + + +
+ + +
+ +
+ + + + + + +
+
+ + + +
+
+
+ + + + +
+
+
+ + + +
+
+
+ + + +
+
+
+ + + +
+
+ + + + + + + + + +

Slot: Study Publication (studyPublication)

+

URL for publication(s) describing the study's rationale and methodology (PubMed Central preferred but not required; pipe-separated if multiple)

+

URI: include:studyPublication

+ + +

Applicable Classes

+ + + + + + + + + + + + + + + +
NameDescriptionModifies Slot
StudyGeneral information about the studyno
+

Properties

+
    +
  • +

    Range: Uri

    +
  • +
  • +

    Multivalued: True

    +
  • +
+

Identifier and Mapping Information

+

Schema Source

+
    +
  • from schema: https://w3id.org/include
  • +
+

LinkML Source

+
+ +
name: studyPublication
+definition_uri: include:studyPublication
+description: URL for publication(s) describing the study's rationale and methodology
+  (PubMed Central preferred but not required; pipe-separated if multiple)
+title: Study Publication
+from_schema: https://w3id.org/include
+rank: 1000
+multivalued: true
+alias: studyPublication
+domain_of:
+- Study
+range: uri
+
+
+ +
+ + + + + + +
+
+ + +
+ +
+ + + +
+
+
+
+ + + + + + + + + + \ No newline at end of file diff --git a/studyName/index.html b/studyTitle/index.html similarity index 95% rename from studyName/index.html rename to studyTitle/index.html index 811c63b..b761f8d 100644 --- a/studyName/index.html +++ b/studyTitle/index.html @@ -8,14 +8,14 @@ - + - Slot: Study Name (studyName) - INCLUDE V2 Data Model + Slot: Study Title (studyTitle) - INCLUDE V2 Data Model @@ -68,7 +68,7 @@
- + Skip to content @@ -101,7 +101,7 @@
- Slot: Study Name (studyName) + Slot: Study Title (studyTitle)
@@ -338,15 +338,15 @@ - + -

Slot: Study Name (studyName)

-

Full name of the study, chosen by data contributor

-

URI: include:studyName

+

Slot: Study Title (studyTitle)

+

Full title of the study

+

URI: include:studyTitle

Applicable Classes

@@ -383,13 +383,13 @@

Schema Source

LinkML Source

-
name: studyName
-definition_uri: include:studyName
-description: Full name of the study, chosen by data contributor
-title: Study Name
+
name: studyTitle
+definition_uri: include:studyTitle
+description: Full title of the study
+title: Study Title
 from_schema: https://w3id.org/include
 rank: 1000
-alias: studyName
+alias: studyTitle
 domain_of:
 - Study
 range: string
diff --git a/dbgap/index.html b/studyWebsite/index.html
similarity index 95%
rename from dbgap/index.html
rename to studyWebsite/index.html
index b7d7094..f1f192b 100644
--- a/dbgap/index.html
+++ b/studyWebsite/index.html
@@ -8,14 +8,14 @@
       
       
       
-        
+        
       
       
       
     
     
       
-        Slot: dbGaP (dbgap) - INCLUDE V2 Data Model
+        Slot: Study Website (studyWebsite) - INCLUDE V2 Data Model
       
     
     
@@ -68,7 +68,7 @@
     
- + Skip to content @@ -101,7 +101,7 @@
- Slot: dbGaP (dbgap) + Slot: Study Website (studyWebsite)
@@ -338,15 +338,15 @@ - + -

Slot: dbGaP (dbgap)

-

dbGaP study accession code

-

URI: include:dbgap

+

Slot: Study Website (studyWebsite)

+

Website for the study

+

URI: include:studyWebsite

Applicable Classes

@@ -368,7 +368,7 @@

Applicable Classes

Properties

Identifier and Mapping Information

Schema Source

@@ -378,16 +378,16 @@

Schema Source

LinkML Source

-
name: dbgap
-definition_uri: include:dbgap
-description: dbGaP study accession code
-title: dbGaP
+
name: studyWebsite
+definition_uri: include:studyWebsite
+description: Website for the study
+title: Study Website
 from_schema: https://w3id.org/include
 rank: 1000
-alias: dbgap
+alias: studyWebsite
 domain_of:
 - Study
-range: string
+range: uri
 
 
diff --git a/vbrEmail/index.html b/vbrEmail/index.html index 1fb346c..991861f 100644 --- a/vbrEmail/index.html +++ b/vbrEmail/index.html @@ -15,7 +15,7 @@ - Slot: Virtual Biorepository Email (vbrEmail) - INCLUDE V2 Data Model + Slot: VBR Email (vbrEmail) - INCLUDE V2 Data Model @@ -68,7 +68,7 @@
- + Skip to content @@ -101,7 +101,7 @@
- Slot: Virtual Biorepository Email (vbrEmail) + Slot: VBR Email (vbrEmail)
@@ -344,7 +344,7 @@ -

Slot: Virtual Biorepository Email (vbrEmail)

+

Slot: VBR Email (vbrEmail)

Email address for Virtual Biorepository requests/inquiries

URI: include:vbrEmail

@@ -381,7 +381,7 @@

LinkML Source

name: vbrEmail
 definition_uri: include:vbrEmail
 description: Email address for Virtual Biorepository requests/inquiries
-title: Virtual Biorepository Email
+title: VBR Email
 from_schema: https://w3id.org/include
 rank: 1000
 alias: vbrEmail
diff --git a/vbrReadme/index.html b/vbrReadme/index.html
index 4902389..41063cb 100644
--- a/vbrReadme/index.html
+++ b/vbrReadme/index.html
@@ -15,7 +15,7 @@
     
     
       
-        Slot: Virtual Biorepository Readme (vbrReadme) - INCLUDE V2 Data Model
+        Slot: VBR Readme (vbrReadme) - INCLUDE V2 Data Model
       
     
     
@@ -68,7 +68,7 @@
     
- + Skip to content @@ -101,7 +101,7 @@
- Slot: Virtual Biorepository Readme (vbrReadme) + Slot: VBR Readme (vbrReadme)
@@ -344,7 +344,7 @@ -

Slot: Virtual Biorepository Readme (vbrReadme)

+

Slot: VBR Readme (vbrReadme)

Instructions for contacting or requesting samples from Virtual Biorepository

URI: include:vbrReadme

@@ -381,7 +381,7 @@

LinkML Source

name: vbrReadme
 definition_uri: include:vbrReadme
 description: Instructions for contacting or requesting samples from Virtual Biorepository
-title: Virtual Biorepository Readme
+title: VBR Readme
 from_schema: https://w3id.org/include
 rank: 1000
 alias: vbrReadme
diff --git a/vbrUrl/index.html b/vbrUrl/index.html
index 1829622..352c05d 100644
--- a/vbrUrl/index.html
+++ b/vbrUrl/index.html
@@ -15,7 +15,7 @@
     
     
       
-        Slot: Virtual Biorepository URL (vbrUrl) - INCLUDE V2 Data Model
+        Slot: VBR URL (vbrUrl) - INCLUDE V2 Data Model
       
     
     
@@ -68,7 +68,7 @@
     
- + Skip to content @@ -101,7 +101,7 @@
- Slot: Virtual Biorepository URL (vbrUrl) + Slot: VBR URL (vbrUrl)
@@ -344,7 +344,7 @@ -

Slot: Virtual Biorepository URL (vbrUrl)

+

Slot: VBR URL (vbrUrl)

Link to Virtual Biorepository request form

URI: include:vbrUrl

@@ -368,7 +368,7 @@

Applicable Classes

Properties

Identifier and Mapping Information

Schema Source

@@ -381,13 +381,13 @@

LinkML Source

name: vbrUrl
 definition_uri: include:vbrUrl
 description: Link to Virtual Biorepository request form
-title: Virtual Biorepository URL
+title: VBR URL
 from_schema: https://w3id.org/include
 rank: 1000
 alias: vbrUrl
 domain_of:
 - Study
-range: string
+range: uri