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Import checks that the fwd/rev FASTQ files are valid FASTQ, and have the same number of reads. The read names can mismatch between the fwd/rev files, but still import. Then the remove contam pipeline fails when BWA MEM throws an error ([mem_sam_pe] paired reads have different names...).
Could add in check during import that N^th read name matches.
The text was updated successfully, but these errors were encountered:
Import checks that the fwd/rev FASTQ files are valid FASTQ, and have the same number of reads. The read names can mismatch between the fwd/rev files, but still import. Then the remove contam pipeline fails when BWA MEM throws an error (
[mem_sam_pe] paired reads have different names...
).Could add in check during import that N^th read name matches.
The text was updated successfully, but these errors were encountered: