diff --git a/CHANGELOG.md b/CHANGELOG.md index 90f3628..621d2ae 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -6,14 +6,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [Unreleased] -## [0.5.0] - 2023-07-18 - -### Fixed - -- Properly handling Ns in the MSA, and in the denovo sequences (see [PR #60](https://github.com/iqbal-lab-org/make_prg/pull/60) -and [PR #61](https://github.com/iqbal-lab-org/make_prg/pull/61) for more details); - -## [0.4.0] - 2022-11-22 +## [0.4.0] - 2022-22-11 ### Added - `make_prg update` command, that updates PRGs without requiring to rebuild MSAs and the PRG itself from scratch; @@ -110,9 +103,8 @@ operations. source project CHANGELOG. -[Unreleased]: https://github.com/iqbal-lab-org/make_prg/compare/0.5.0...HEAD +[Unreleased]: https://github.com/iqbal-lab-org/make_prg/compare/0.4.0...HEAD -[0.5.0]: https://github.com/iqbal-lab-org/make_prg/compare/0.4.0...0.5.0 [0.4.0]: https://github.com/iqbal-lab-org/make_prg/compare/0.2.0...0.4.0 [0.2.0]: https://github.com/iqbal-lab-org/make_prg/compare/0.1.1...0.2.0 [0.1.1]: https://github.com/iqbal-lab-org/make_prg/compare/0.1.0...0.1.1 diff --git a/Dockerfile b/Dockerfile index 2e8e989..e73106e 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,6 +1,6 @@ -# To build: docker build . -t make_prg:0.5.0 +# To build: docker build . -t make_prg:0.4.0 # Tagged as such, it can be used in scripts/build_precompiled_binary/build_precompiled_binary.sh to build the precompiled binary -FROM python:3.8-slim +FROM python:3.10-slim ENV DEBIAN_FRONTEND=noninteractive diff --git a/README.md b/README.md index 57bfe36..38e29e3 100644 --- a/README.md +++ b/README.md @@ -37,13 +37,13 @@ In this binary, all libraries are linked statically. Compilation is done using [ #### Download ``` -wget https://github.com/iqbal-lab-org/make_prg/releases/download/0.5.0/make_prg_0.5.0 +wget https://github.com/iqbal-lab-org/make_prg/releases/download/0.4.0/make_prg_0.4.0 ``` #### Run ``` -chmod +x make_prg_0.5.0 -./make_prg_0.5.0 -h +chmod +x make_prg_0.4.0 +./make_prg_0.4.0 -h ``` ### pip @@ -77,7 +77,7 @@ The above will use the latest version. If you want to specify a version then use [tag][quay.io] (or commit) like so. ```sh -VERSION="0.5.0" +VERSION="0.4.0" URI="docker://quay.io/iqballab/make_prg:${VERSION}" ``` diff --git a/pyproject.toml b/pyproject.toml index 29b9df6..0f09cf0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "make_prg" -version = "0.5.0" +version = "0.4.0" description = "Code to create a PRG from a Multiple Sequence Alignment file" authors = ["Michael Hall ", "Leandro Ishi ", "Brice Letcher ", "Rachel Colquhoun "] diff --git a/sample_example/run_make_prg_on_sample_example.sh b/sample_example/run_make_prg_on_sample_example.sh index dc7bf7b..828fd07 100755 --- a/sample_example/run_make_prg_on_sample_example.sh +++ b/sample_example/run_make_prg_on_sample_example.sh @@ -2,9 +2,9 @@ set -eu # configs -version="0.5.0" +version="0.4.0" make_prg="./make_prg_${version}" -make_prg_URL="https://github.com/iqbal-lab-org/make_prg/releases/download/${version}/make_prg_${version}" +make_prg_URL="https://github.com/iqbal-lab-org/make_prg/releases/download/0.4.0/make_prg_0.4.0" if [ ! -f ${make_prg} ]; then diff --git a/scripts/build_precompiled_binary/build_precompiled_binary.sh b/scripts/build_precompiled_binary/build_precompiled_binary.sh index 4eb0892..f4a4924 100755 --- a/scripts/build_precompiled_binary/build_precompiled_binary.sh +++ b/scripts/build_precompiled_binary/build_precompiled_binary.sh @@ -1,7 +1,7 @@ #!/usr/bin/env bash set -eu -version="0.5.0" +version="0.4.0" CURRENT_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" SCRIPTS_DIR="$(dirname "${CURRENT_DIR}")"