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typos in msa description
fix indentation
link to QC tsv file
Write sequences section
Write self qc section
Write amplicons section
Write scheme_choice section
Write amplicon scheme name section
Write read depth section
Write reads section
Write stages completed section
Add run summary section
Start rewrite: template to be completed
Updated JSON output file (markdown)
add description of amplicon_success in viridian json
add description of finished_running
remove actual path in example json
typo fixes
write viridian section
write read_sampling section
add amplicon_scheme_name to intro list
typo
say what read_lengths is
write read_and_primer_stats section
Start writing json page. Intro and run_summary done