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Installation failure #8

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SPPearce opened this issue Apr 20, 2020 · 1 comment
Open

Installation failure #8

SPPearce opened this issue Apr 20, 2020 · 1 comment

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@SPPearce
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Hi,

I'm getting a failure to install the package. This seems to be related to the error message that your goldmine package gives related to a conflict between IRanges and data.table. Which then causes a failure.

Error: package or namespace load failed for ‘goldmine’:
 (converted from warning) replacing previous import ‘IRanges::shift’ by ‘data.table::shift’ when loading ‘goldmine’
Error: package ‘goldmine’ could not be loaded
Execution halted
ERROR: lazy loading failed for package ‘methylaction’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/methylaction’
Error: Failed to install 'methylaction' from GitHub:
  (converted from warning) installation of package ‘/var/folders/68/jm_n_lvx5q79bdkjj16lnxfw0000gr/T//RtmpUoJ4ez/file12a7befcc38/methylaction_2.0.tar.gz’ had non-zero exit status
@SPPearce
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SPPearce commented May 11, 2020

I have got round this by installing from a local library, as the blocking issue is in install_github turning the warning into an error. It would be good for it to be fixed directly though.

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