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phipo.owl
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phipo.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/phipo.owl#"
xml:base="http://purl.obolibrary.org/obo/phipo.owl"
xmlns:chebi="http://purl.obolibrary.org/obo/chebi/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:oboInOWL="http://www.geneontology.org/formats/oboInOWL#"
xmlns:go="http://purl.obolibrary.org/obo/go#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#"
xmlns:chebi1="http://purl.obolibrary.org/obo/chebi#"
xmlns:chebi2="http://purl.obolibrary.org/obo/chebi#3"
xmlns:chebi3="http://purl.obolibrary.org/obo/chebi#1"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:pato="http://purl.obolibrary.org/obo/pato#"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/phipo.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/phipo/releases/2018-11-09/phipo.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/phipo/imports/chebi_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/phipo/imports/ido_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/phipo/imports/go_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/phipo/imports/so_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/phipo/imports/ro_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/phipo/imports/pato_import.owl"/>
<obo:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">alaynecuzick</obo:created_by>
<obo:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2018-07-09T13:43:00Z</obo:creation_date>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
<!-- http://purl.obolibrary.org/obo/created_by -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/created_by"/>
<!-- http://purl.obolibrary.org/obo/creation_date -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/creation_date"/>
<!-- http://purl.obolibrary.org/obo/def -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/def"/>
<!-- http://purl.obolibrary.org/obo/namespace -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/namespace"/>
<!-- http://www.geneontology.org/formats/oboInOWL#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOWL#hasExactSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOWL#hasRelatedSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOWL#hasRelatedSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOWL#inSubset -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOWL#inSubset"/>
<!-- http://www.geneontology.org/formats/oboInOwl#created_by -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by"/>
<!-- http://www.geneontology.org/formats/oboInOwl#creation_date -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#creation_date"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasOBONamespace -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"/>
<!-- http://www.w3.org/2000/01/rdf-schema#comment -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://www.purl.obolibrary.org/obo/phipo.owl/PHIPO_0000304 -->
<owl:ObjectProperty rdf:about="http://www.purl.obolibrary.org/obo/phipo.owl/PHIPO_0000304">
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">alaynecuzick</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-10-12T13:24:02Z</oboInOwl:creation_date>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Used in FYPO as described in PATO best practices; placeholder relation to indicate normality/abnormality.
which namespace? do we need all 3 triplicated again?</rdfs:comment>
<rdfs:label xml:lang="en">qualifier</rdfs:label>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000001 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000001">
<rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000002 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000003 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000004 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000015 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000015">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000016 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000016">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000017 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000020 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000020">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000023 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000023">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000031 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000031">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000040 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CARO_0000000 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CARO_0000000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0030000"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CARO_0000003 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CARO_0000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000006"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CARO_0000006 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CARO_0000006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CARO_0030000 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CARO_0030000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_10545 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_10545">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_36338"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_22712 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_22712">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33836"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_23116 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_23116">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_24473"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_23117 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_23117">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_24471"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_23132 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_23132">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_22712"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_36683"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_23367 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_24431"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_23924 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_23924">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_35222"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_52206"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_24127 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_24127">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_25944"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_35718"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_24431 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_24431">
<rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_24432 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_24432">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_50906"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_24433 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_24433">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_24431"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_24471 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_24471">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33675"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/CHEBI_24473 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_24473">
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<!-- http://purl.obolibrary.org/obo/CHEBI_33559 -->
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<!-- http://purl.obolibrary.org/obo/CHEBI_33582 -->
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<!-- http://purl.obolibrary.org/obo/CHEBI_36340 -->
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