diff --git a/.DS_Store b/.DS_Store deleted file mode 100644 index 4336322..0000000 Binary files a/.DS_Store and /dev/null differ diff --git a/README.md b/README.md index b0a6349..c75780d 100644 --- a/README.md +++ b/README.md @@ -46,8 +46,8 @@ Rscript get_model.R (--adaptive | --markovian) --order --input - ### Output The output of the execution will be stored in the in a CSV file with the following format: -- **The first _norder_ columns**: contain the encoding of the source following the format described in[1]. -- **The next _norder_ columns**: contain the encoding of the destination following the format described in[1]. +- **The first _norder_ columns**: contain the encoding of the source following the format Src1, Src2,..., SrcN, being the last one the most recent position. +- **The next _norder_ columns**: contain the encoding of the destination following the format Target1, Target2,..., TargetN, being the last one the most recent position. - **Transition probability**: the last column contain the transition from source to destination. ### Example diff --git a/test.csv b/test.csv deleted file mode 100644 index 4dbeae9..0000000 --- a/test.csv +++ /dev/null @@ -1,3349 +0,0 @@ -"src1","target1","prob" -1,1,0.481618987292874 -1,4,0.0741719703939696 -1,3,0.125884449690281 -1,2,0.0882487715973533 -1,5,0.0848235919986239 -1,6,0.0445207147895701 -1,15,0.00160559534043267 -1,9,0.00726065834872948 -1,7,0.0310347957091703 -1,8,0.0294058373494861 -1,10,0.00813558173807294 -1,14,0.00140908127918281 -1,20,0.000361189044733706 -1,12,0.00408230399703542 -1,13,7.23589001447178e-05 -1,22,0.000716381480022961 -1,25,0.00161512236289551 -1,26,0.000930050840029014 -1,33,0.000639173888306297 -1,19,0.00290335294160234 -1,56,0.000199315133675274 -1,87,1.28981996692902e-06 -1,89,3.34994908077397e-05 -1,34,7.53738543174144e-06 -1,40,8.79361633703168e-05 -1,29,9.83687566941386e-06 -1,58,2.19625929978547e-05 -1,48,9.24585946293616e-05 -1,119,0.000180897250361794 -1,116,2.00996944846438e-05 -1,73,0.00066093344217836 -1,96,8.34910386285205e-05 -1,118,5.02492362116096e-06 -1,86,3.54700490905479e-06 -1,44,0.00042461732504495 -1,52,1.57873963952112e-05 -1,54,0.00104503860298289 -1,53,5.62161921658572e-05 -1,107,0.000121635055909055 -1,11,0.00155682184371872 -1,42,9.69984053234872e-05 -1,49,0.000491370001531708 -1,64,3.84666566861287e-05 -1,38,3.0922606899452e-06 -1,50,0.000649890121670151 -1,74,8.03987779385753e-05 -1,47,0.00072885509870346 -1,39,9.0912464284389e-05 -1,36,0.000539165488895095 -1,101,0.000482392667631452 -1,108,2.67995926461918e-05 -1,70,0.000241196333815726 -1,43,2.00996944846438e-05 -1,63,0.000120598166907863 -1,28,0.00122041690420851 -1,21,8.93319754873059e-06 -1,72,4.01993889692877e-05 -1,81,0.000241196333815726 -1,100,1.4577800395456e-05 -1,102,0.000120598166907863 -1,67,0.000241196333815726 -1,27,1.72283095582661e-05 -1,68,1.75184705613527e-05 -1,41,9.56980831395215e-06 -1,62,1.46179596251955e-06 -1,35,6.18452137989041e-06 -1,90,0.000120598166907863 -1,109,9.64785335262904e-06 -1,121,6.02990834539315e-05 -1,45,2.84168094438068e-05 -1,59,4.82392667631452e-05 -1,16,2.13448083022766e-06 -1,30,4.01993889692877e-05 -1,32,7.78052689728148e-06 -1,57,3.86532586243151e-05 -1,55,2.67995926461918e-05 -2,2,0.442490448959191 -2,1,0.16840727862028 -2,3,0.139624401440498 -2,5,0.0271987456327447 -2,4,0.118396795858061 -2,6,0.0267390013983384 -2,7,0.0242055266776595 -2,10,0.00671943859921278 -2,54,0.00152970256908988 -2,8,0.0182786365428555 -2,11,0.000530631620470362 -2,9,0.00875986918726935 -2,12,0.00447186702799172 -2,19,0.00179449096943537 -2,20,0.00068949923688338 -2,33,7.38279195455514e-05 -2,73,0.00061662009190499 -2,43,0.000232329756663415 -2,108,0.000256379537517951 -2,26,0.000185549295212188 -2,84,1.08864866041782e-05 -2,100,4.95933072519506e-05 -2,16,0.000484912337574628 -2,29,1.00360309965285e-05 -2,15,0.000868237443729785 -2,22,0.000269259493658045 -2,44,0.000376003767688669 -2,59,7.29394602479942e-05 -2,42,0.0029158627640134 -2,53,8.75112508714897e-05 -2,38,9.11743253099927e-06 -2,101,9.11743253099927e-05 -2,98,1.25757690082749e-05 -2,50,4.73632858753209e-06 -2,21,1.49619405636911e-05 -2,58,0.000364697301239971 -2,25,0.000451801015258346 -2,14,0.000403733419780101 -2,28,0.000569670691844288 -2,41,2.85987837477425e-05 -2,115,2.80536385569208e-05 -2,71,1.45878920495988e-05 -2,45,2.27935813274982e-05 -2,64,2.43131534159981e-05 -2,119,0.000410284463894967 -2,123,6.07828835399951e-05 -2,55,3.64697301239971e-05 -2,122,0.000182348650619985 -2,35,4.77421921623235e-05 -2,39,0.000364697301239971 -2,46,0.000364697301239971 -2,34,3.03914417699976e-05 -2,51,2.43131534159981e-05 -2,40,9.11743253099927e-05 -3,4,0.140317382490988 -3,1,0.148476699268589 -3,6,0.0571768754684457 -3,3,0.411385033442064 -3,2,0.0703943524922839 -3,8,0.0335249048068277 -3,5,0.0440763131469702 -3,9,0.0114806645617688 -3,7,0.0446560488766861 -3,28,0.000874732622722876 -3,25,0.00123781447633608 -3,54,0.001510843481954 -3,22,0.000922486465638347 -3,19,0.00434758108253894 -3,11,0.00108003033797824 -3,10,0.00998721884017208 -3,26,0.000992627714553797 -3,14,0.000898797152587502 -3,12,0.00723525352606395 -3,33,0.000939054659588153 -3,15,0.0015773230812618 -3,38,2.92300189516702e-05 -3,89,2.84738041002278e-05 -3,32,0.00022128213472177 -3,119,7.59301442672741e-05 -3,100,8.95568933723831e-05 -3,44,0.000343086040684468 -3,36,0.000165949133037343 -3,73,0.000698134285399256 -3,107,0.000564874255079266 -3,42,0.000254655152149457 -3,84,5.48892609161018e-06 -3,35,0.000417615793470008 -3,70,0.000189825360668185 -3,87,1.42369020501139e-05 -3,52,4.3219573381321e-05 -3,90,8.68152348790162e-06 -3,13,5.89457698916996e-05 -3,16,0.000388464041653108 -3,47,2.84738041002278e-05 -3,29,0.000226294272323649 -3,98,2.0708221163802e-05 -3,74,7.34807847747814e-06 -3,20,0.00117852531686206 -3,58,3.06075000147151e-05 -3,39,6.32751202227284e-06 -3,108,0.000240445456846368 -3,30,1.26550240445457e-05 -3,43,2.49948313729635e-05 -3,59,0.000239779402949287 -3,55,1.62707452001302e-05 -3,118,7.59301442672741e-05 -3,53,0.000203384315001627 -3,56,7.59301442672741e-05 -3,64,0.000227790432801822 -3,116,0.000227790432801822 -3,78,1.57096850208153e-05 -3,93,5.84078032825185e-06 -3,101,7.59301442672741e-05 -3,24,1.0354110581901e-05 -3,18,4.55580865603645e-05 -3,46,1.26550240445457e-05 -3,45,1.62707452001302e-05 -3,80,5.69476082004556e-05 -3,96,0.000227790432801822 -4,1,0.0887561926083412 -4,4,0.488736105301811 -4,3,0.144869350606156 -4,2,0.0707403142892763 -4,7,0.0390810101882156 -4,6,0.0408390464030847 -4,8,0.0286674654733674 -4,5,0.0411034741837129 -4,10,0.00813799969750427 -4,19,0.00336347805704597 -4,20,0.00123682111034405 -4,12,0.010840178616164 -4,97,9.54653937947494e-06 -4,9,0.0144994032305436 -4,13,0.00026549069571303 -4,40,5.4241701019744e-06 -4,22,0.00328512833744678 -4,36,0.000594275469986894 -4,17,0.000202295715422207 -4,100,0.000989127552373376 -4,11,0.00124200218223687 -4,25,0.000955880383014805 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