Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

indel support: dataloader-utility:VcfReader #5

Open
krrome opened this issue Jun 13, 2018 · 0 comments
Open

indel support: dataloader-utility:VcfReader #5

krrome opened this issue Jun 13, 2018 · 0 comments

Comments

@krrome
Copy link
Contributor

krrome commented Jun 13, 2018

The VCF reader class is designed to return variant objects compatible with VariantSeqExtractor.extract. It can either be used as an iterator starting from the beginning of the VCF file or an iterator for variants in a genomic regions defined by overlap. This functionality is all built in cyvcf2 so VcfReader is essentially a wrapper that converts vcf records to instances of our own variant class.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@krrome