Recover Archer Fusion Events

[averyniceday]

Done Condition (What do we need? Why do we need it? Keep this is small as possible!)

SV Records with or without Site1/2 Gene
Indicate whether event is from Archer - check annotation on frontend, confirm with Angelica
RNA Support - unknown

Technical Description (How are we going to achieve the above)

Potential Issues

Dependencies

Technical Requirements

Outside People/Teams

Changes

[averyniceday]

Appears that cases without Site1/Site2 gene are due to actual runs where test was run and no fusions found --

Validated by doing a check for all samples without Site1/Site2 Hugo Symbol --
Total ~4000/30000

Checked data to see if there was an issue with processing noticed comment like --
DIAGNOSTIC INTERPRETATION: NEGATIVE FOR GENE FUSIONS IN THE CLINICALLY VALIDATED PANEL NEGATIVE FOR GENE FUSIONS IN THE INVESTIGATIONAL PANE

did a check for comments across all samples without site1/site2 -- all had similar comments. "NEGATIVE FOR GENE FUSIONS" cases were removed and check redone - total remaining cases: 42.

[averyniceday]

Pinged Mihir Sept 25 about the above ^