.peco.snippet.bioinfo

#
# file: .peco.snippets.bioinfo
#

# awk
# bamtools
# fastqc
# grep
[remove header] grep -v "^#"
# perl
[print TSV header]perl -e 'for(split(/\t/, <STDIN>)){$i++; print "$i $_\n"}' <
# python
# ruby
# samtools
[bam to sam] samtools view
[sam to bam] samtools view -bS
[sort bam] samtools sort
[make fasta index] samtools faidx
# sed
# sort
[sort BED file] sort -V -k1 -k2n