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CMakeLists.txt
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CMakeLists.txt
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cmake_minimum_required(VERSION 2.8)
project(Dendro-5.0 C CXX Fortran)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++11")
find_package(OpenMP REQUIRED)
find_package(MPI REQUIRED)
find_package(GSL REQUIRED)
# For now we just make it compulsory to have LAPACK installed.
#Later we will make it possible if LAPACK is not present to automaticall install before compiling dendro5
if(OPENMP_FOUND)
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}")
endif()
if(MPI_COMPILE_FLAGS)
set(COMPILE_FLAGS "${COMPILE_FLAGS} ${MPI_COMPILE_FLAGS}")
endif()
if(MPI_LINK_FLAGS)
set(LINK_FLAGS "${LINK_FLAGS} ${MPI_LINK_FLAGS}")
endif()
## options for dendro
option(USE_64BIT_INDICES "Use 64-Bit indices. Reverts to 32-bit if turned off" ON)
option(HILBERT_ORDERING "Use Hilbert ordering instead of Morton" ON)
option(RUN_WEAK_SCALING "Run Entire Weak Scaling" ON)
option(ALLTOALLV_FIX "Use K-way all to all v" OFF)
option(SPLITTER_SELECTION_FIX "Turn on Splitter Selection fix" ON)
option(DIM_2 "use the two dimentional sorting" OFF)
option(PROFILE_TREE_SORT "Profile the tree sort code, construction and balancing. " OFF)
option(WITH_BLAS_LAPACK "build using BLAS and LAPACk" ON)
option(MANUAL_BLAS_LAPACK "configure BLAS and LAPACK Manually" OFF)
option(DENDRO_VTK_BINARY "write vtk/vtu files in binary mode " ON)
option(DENDRO_VTK_ZLIB_COMPRES "write vtk/vtu files in binary mode with zlib compression (only compatible with binary mode) " OFF)
option(ALLTOALL_SPARSE "uses isend irecv for ghost exchange (for some mpi implementations this might be efficient)" OFF)
option(ENABLE_DENDRO_PROFILE_COUNTERS " enables dendro internal profile counters. " OFF)
option(RK_SOLVER_OVERLAP_COMM_AND_COMP " enables RK solver comm. & comp. overlap. (might be good in large scale runs) " ON)
option(WITH_CUDA " build dendro with cuda " OFF)
option(BUILD_WITH_PETSC " build dendro with PETSC " OFF)
option(USE_FD_INTERP_FOR_UNZIP "use FD style interpolation for unzip" OFF)
#option(KWAY "K parameter for alltoallv_kway" 128)
set(KWAY 128 CACHE STRING 128)
set(NUM_NPES_THRESHOLD 2 CACHE STRING 2)
#set the build type to release by default.
if(NOT CMAKE_BUILD_TYPE)
set(CMAKE_BUILD_TYPE "Release" CACHE STRING
"Choose the type of build, options are: Debug Release " FORCE)
endif()
if(WITH_CUDA)
find_package(CUDA REQUIRED)
if(CUDA_FOUND)
set(CUDA_PROPAGATE_HOST_FLAGS OFF)
set(CUDA_SEPARABLE_COMPILATION ON)
#list( APPEND CUDA_NVCC_FLAGS -gencode arch=compute_30,code=sm_30)
#list( APPEND CUDA_NVCC_FLAGS -gencode arch=compute_50,code=sm_50)
#list( APPEND CUDA_NVCC_FLAGS -gencode arch=compute_60,code=sm_60)
#list( APPEND CUDA_NVCC_FLAGS --generate-line-info)
#list( APPEND CUDA_NVCC_FLAGS -gencode arch=compute_61,code=sm_61)
#list( APPEND CUDA_NVCC_FLAGS -use_fast_math )
#list( APPEND CUDA_NVCC_FLAGS -maxrregcount 64 )
list( APPEND CUDA_NVCC_FLAGS -std=c++11)
endif()
endif()
#set_source_files_properties( tags PROPERTIES GENERATED true)
#add_custom_command ( OUTPUT tags
#COMMAND ctags -R --c++-kinds=+p --fields=+iaS --extra=+q .
#WORKING_DIRECTORY ${CMAKE_SOURCE_DIR} )
#add_definitions(-DDEBUG_UNZIP_OP_3PT)
if(WITH_BLAS_LAPACK)
add_definitions(-DWITH_BLAS_LAPACK)
if(MANUAL_BLAS_LAPACK)
if("$ENV{BLAS}" STREQUAL "")
message("Environment Variable BLAS is not set. Please set it to BLAS directory")
endif()
if( "$ENV{LAPACK}" STREQUAL "" )
message("Enviroment Variable LAPACK is note set. Please set it to LAPACK directory. ")
endif()
set(LAPACKE_DIR $ENV{LAPACK}/LAPACKE)
set(BLAS_LIBS $ENV{BLAS}/lib )
set(LAPACK_LIBS $ENV{LAPACK}/lib)
set(LAPACK_LINKER_FLAGS -llapacke -llapack -lblas -lgfortran -lquadmath)
set(LAPACK_LIBRARIES ${LAPACK_LIBS}/liblapacke.a ${LAPACK_LIBS}/liblapack.a ${BLAS_LIBS}/libblas.a -static libgfortran.a libquadmath.a)
set(LINK_FLAGS "${LINK_FLAGS} ${LAPACK_LINKER_FLAGS}")
else ()
find_package(BLAS REQUIRED)
find_package(LAPACK REQUIRED)
set(LAPACK_LINKER_FLAGS -llapacke -llapack -lblas -lgfortran -lquadmath)
set(LAPACKE_DIR $ENV{LAPACK}/LAPACKE)
set(LINK_FLAGS "${LINK_FLAGS} ${LAPACK_LINKER_FLAGS}")
# LAPACKE is not used anymore.
#find_library(LAPACKE_LIB
# NAMES lapacke lapackelib liblapacke
# HINTS "/usr/lib/"
# )
set(LAPACK_LIBRARIES ${LAPACK_LIBRARIES} ${LAPACKE_LIB})
message(STATUS ${LAPACK_LIBRARIES})
if (CMAKE_CXX_COMPILER_ID STREQUAL "Intel")
message("${CMAKE_CXX_COMPILER_ID} compiler detected adding -mkl flag for BLAS LAPACK")
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -mkl")
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -mkl")
endif()
endif()
endif()
if(BUILD_WITH_PETSC)
list (APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake-modules")
find_package(PETSc REQUIRED)
add_definitions(-DBUILD_WITH_PETSC)
endif()
if(DIM_2)
add_definitions(-DDIM_2)
endif()
if(PROFILE_TREE_SORT)
add_definitions(-DPROFILE_TREE_SORT)
endif()
if(USE_64BIT_INDICES)
add_definitions(-DUSE_64BIT_INDICES)
#message('Configuring 64BIT indices')
endif()
if(HILBERT_ORDERING)
add_definitions(-DHILBERT_ORDERING)
#message (Configuring with HIlbert)
endif()
if(RUN_WEAK_SCALING)
add_definitions(-DRUN_WEAK_SCALING)
#message('Configuring with Weak Scaling')
endif()
if(ALLTOALLV_FIX)
add_definitions(-DALLTOALLV_FIX)
add_definitions(-DKWAY=${KWAY})
endif()
if(SPLITTER_SELECTION_FIX)
add_definitions(-DSPLITTER_SELECTION_FIX)
add_definitions(-DNUM_NPES_THRESHOLD=${NUM_NPES_THRESHOLD})
endif()
if(ALLTOALL_SPARSE)
add_definitions(-DALLTOALL_SPARSE)
endif()
if(ENABLE_DENDRO_PROFILE_COUNTERS)
add_definitions(-DENABLE_DENDRO_PROFILE_COUNTERS)
endif()
if(RK_SOLVER_OVERLAP_COMM_AND_COMP)
add_definitions(-DRK_SOLVER_OVERLAP_COMM_AND_COMP)
endif()
if(DENDRO_VTK_BINARY)
else()
set(DENDRO_VTK_ZLIB_COMPRES OFF)
endif()
if(DENDRO_VTK_BINARY)
add_definitions(-DDENDRO_VTU_BINARY)
if(DENDRO_VTK_ZLIB_COMPRES)
add_definitions(-DDENDRO_VTU_ZLIB)
endif()
else()
add_definitions(-DDENDRO_VTU_ASCII)
endif()
if(USE_FD_INTERP_FOR_UNZIP)
add_definitions(-DUSE_FD_INTERP_FOR_UNZIP)
endif()
#set(NUFFT_SRC ${CMAKE_CURRENT_SOURCE_DIR}/external/nufft3d-1.3.2/nufft3df90.f
# ${CMAKE_CURRENT_SOURCE_DIR}/external/nufft3d-1.3.2/dirft3d.f
# ${CMAKE_CURRENT_SOURCE_DIR}/external/nufft3d-1.3.2/dfftpack.f
# ${CMAKE_CURRENT_SOURCE_DIR}/external/nufft3d-1.3.2/next235.f
#)
#add_library(nufft3d_v1.3 STATIC ${NUFFT_SRC})
add_definitions(-DMATVEC_PROFILE)
set(LAPACK_INC /home/milinda/Programs/lapack-3.7.0/LAPACKE/include/)
set(DENDRO_INCLUDE_FILES
include/point.h
include/pointT.h
include/seqUtils.h
include/seqUtils.tcc
include/ompUtils.h
include/ompUtils.tcc
include/dendro.h
include/binUtils.h
include/hcurvedata.h
include/genPts_par.h
include/TreeNode.h
include/key.h
include/skey.h
include/node.h
include/treenode2vtk.h
include/parUtils.h
include/parUtils.tcc
include/mesh.h
include/mesh.tcc
include/meshE2NUtils.tcc
include/dendro.h
include/colors.h
include/dtypes.h
include/sfcSort.h
include/sfcSearch.h
include/octUtils.h
include/dendroIO.h
include/mathMeshUtils.h
include/mathUtils.h
include/mathUtils.tcc
include/stencil.h
include/dollar.hpp
include/block.h
include/sc_flops.h
include/wavelet.h
include/profiler.h
include/dendroProfileParams.h
include/daUtils.h
include/daUtils.tcc
include/cuda/block_cu.h
include/oda.h
include/oda.tcc
include/odaUtils.h
include/asyncExchangeContex.h
include/matRecord.h
include/nufft.h
include/sub_oda.h
include/sub_oda.tcc
include/dvec.h
include/meshUtils.h
test/include/testUtils.h
test/include/testUtils.tcc
test/include/meshTestUtils.h
)
set(DENDRO_SOURCE_FILES
src/dendro.cpp
src/point.cpp
src/binUtils.cpp
src/hcurvedata.cpp
src/genPts_par.cpp
src/TreeNode.cpp
src/treenode2vtk.cpp
src/parUtils.cpp
src/mesh.cpp
src/octUtils.cpp
src/dendroIO.cpp
src/block.cpp
src/sc_flops.cpp
src/profiler.cpp
src/dendroProfileParams.cpp
src/oda.cpp
src/odaUtils.cpp
src/sub_oda.cpp
src/meshUtils.cpp
test/src/meshTestUtils.cpp
)
set(FEM_INC FEM/include/basis.h
FEM/include/lapac.h
FEM/include/tensor.h
FEM/include/matvec.h
FEM/include/workspace.h
FEM/include/operators.h
FEM/include/feMat.h
FEM/include/feMatrix.h
FEM/include/feVec.h
FEM/include/feVector.h
)
set(FEM_SRC FEM/examples/src/laplace.cpp
FEM/src/basis.cpp
FEM/src/refel.cpp
FEM/src/tensor.cpp
FEM/src/workspace.cpp
)
set(LINALG_INC
LinAlg/include/cg.h
)
set(ODE_INC ODE/include/fdCoefficient.h
ODE/include/rk.h
ODE/include/rkMaxwell.h
ODE/include/rkTransport.h
ODE/include/rkTransportUtils.h
ODE/include/ts.h
ODE/include/blkAsync.h
ODE/include/ctx.h
ODE/include/ets.h
ODE/include/enuts.h
ODE/include/asyncCtxByLev.h
ODE/include/subSM.h
ODE/include/enutsOp.h
)
set(ODE_SRC ODE/src/rk.cpp
ODE/src/subSM.cpp
ODE/src/rkMaxwell.cpp
ODE/src/rkTransport.cpp
ODE/src/enutsOp.cpp
)
set(IO_INC IO/vtk/include/oct2vtk.h
IO/vtk/include/json.hpp
IO/vtk/include/checkPoint.h
IO/vtk/include/cencode.h
IO/include/rawIO.h)
set(IO_SRC IO/vtk/src/oct2vtk.cpp
IO/vtk/src/checkPoint.cpp )
set(ZLIB_INC IO/zlib/inc/crc32.h
IO/zlib/inc/deflate.h
IO/zlib/inc/gzguts.h
IO/zlib/inc/inffast.h
IO/zlib/inc/inffixed.h
IO/zlib/inc/inflate.h
IO/zlib/inc/inftrees.h
IO/zlib/inc/trees.h
IO/zlib/inc/zlib.h
IO/zlib/inc/zconf.h
IO/zlib/inc/zutil.h
)
set(ZLIB_SRC
IO/zlib/src/adler32.c
IO/zlib/src/compress.c
IO/zlib/src/crc32.c
IO/zlib/src/deflate.c
IO/zlib/src/gzclose.c
IO/zlib/src/gzlib.c
IO/zlib/src/gzread.c
IO/zlib/src/gzwrite.c
IO/zlib/src/infback.c
IO/zlib/src/inffast.c
IO/zlib/src/inflate.c
IO/zlib/src/inftrees.c
IO/zlib/src/trees.c
IO/zlib/src/uncompr.c
IO/zlib/src/zutil.c
)
if(WITH_CUDA)
set(DENDRO_INCLUDE_FILES ${DENDRO_INCLUDE_FILES} include/cudaUtils.h)
set(DENDRO_SOURCE_FILES ${DENDRO_SOURCE_FILES} src/cudaUtils.cpp src/oda.cpp FEM/examples/src/heatMat.cpp)
endif()
add_library(dendro5 ${DENDRO_INCLUDE_FILES} ${DENDRO_SOURCE_FILES} ${LINALG_INC} ${FEM_INC} ${FEM_SRC} ${ODE_INC} ${ODE_SRC} ${IO_INC} ${IO_SRC} ${ZLIB_INC} ${ZLIB_SRC} )
target_include_directories(dendro5 PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(dendro5 PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(dendro5 PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(dendro5 PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(dendro5 PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/FEM/examples/include)
target_include_directories(dendro5 PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(dendro5 PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(dendro5 PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(dendro5 PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(dendro5 PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/IO/include)
target_include_directories(dendro5 PUBLIC ${MPI_INCLUDE_PATH})
target_include_directories(dendro5 PUBLIC ${GSL_INCLUDE_DIRS})
if(WITH_CUDA)
target_include_directories(dendro5 PUBLIC ${CUDA_INCLUDE_DIRS})
endif()
if(WITH_BLAS_LAPACK)
if(MANUAL_BLAS_LAPACK)
#target_include_directories(dendro5 PUBLIC ${LAPACKE_DIR}/include)
else()
target_include_directories(dendro5 PUBLIC ${LAPACK_INCLUDE_DIR})
#target_include_directories(dendro5 PUBLIC ${LAPACKE_DIR}/include)
endif()
endif()
if(BUILD_WITH_PETSC)
target_include_directories(dendro5 PUBLIC ${PETSC_INCLUDES})
target_link_libraries(dendro5 PUBLIC ${PETSC_LIBRARIES})
endif()
set(SOURCE_FILES Hilbert/src/genHTables.cpp include/radix.h)
add_executable(genHtables ${SOURCE_FILES})
install(TARGETS genHtables RUNTIME DESTINATION bin)
target_include_directories(genHtables PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
set(SOURCE_FILES Hilbert/src/sfcMatvecTable.cpp include/dendro.h)
add_executable(genSFCMatVecTables ${SOURCE_FILES})
install(TARGETS genSFCMatVecTables RUNTIME DESTINATION bin)
target_link_libraries(genSFCMatVecTables m)
target_include_directories(genSFCMatVecTables PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
set(SOURCE_FILES examples/src/ptsSort.cpp)
add_executable(ptsSort ${SOURCE_FILES})
install(TARGETS ptsSort RUNTIME DESTINATION bin)
target_include_directories(ptsSort PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(ptsSort PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(ptsSort PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(ptsSort PRIVATE ${MPI_INCLUDE_PATH})
target_link_libraries(ptsSort dendro5 ${MPI_LIBRARIES} m)
set(SOURCE_FILES
examples/include/testOctUtils.h
examples/src/testOCtUtils.cpp
)
add_executable(testOctUtils ${SOURCE_FILES})
install(TARGETS testOctUtils RUNTIME DESTINATION bin)
target_link_libraries(testOctUtils dendro5 ${MPI_LIBRARIES} m)
target_include_directories(testOctUtils PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(testOctUtils PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(testOctUtils PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(testOctUtils PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(testOctUtils PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(testOctUtils PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(testOctUtils PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(testOctUtils PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(testOctUtils PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(testOctUtils PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES examples/src/tstTreeSearch.cpp)
add_executable(tstTreeSearch ${SOURCE_FILES})
install(TARGETS tstTreeSearch RUNTIME DESTINATION bin)
target_link_libraries(tstTreeSearch dendro5 ${MPI_LIBRARIES} m)
target_include_directories(tstTreeSearch PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(tstTreeSearch PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(tstTreeSearch PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(tstTreeSearch PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(tstTreeSearch PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(tstTreeSearch PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(tstTreeSearch PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(tstTreeSearch PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(tstTreeSearch PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(tstTreeSearch PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES
examples/include/octUtilsBenchmark.h
examples/src/octUtilsBenchmark.cpp
)
#set_source_files_properties( tags PROPERTIES GENERATED true)
#add_custom_command ( OUTPUT tags
# COMMAND ctags -R --c++-kinds=+p --fields=+iaS --extra=+q .
# WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )
add_executable(octUtilBenchmark ${SOURCE_FILES})
install(TARGETS octUtilBenchmark RUNTIME DESTINATION bin)
target_link_libraries(octUtilBenchmark dendro5 ${MPI_LIBRARIES} m)
target_include_directories(octUtilBenchmark PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(octUtilBenchmark PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(octUtilBenchmark PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(octUtilBenchmark PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(octUtilBenchmark PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(octUtilBenchmark PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(octUtilBenchmark PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(octUtilBenchmark PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(octUtilBenchmark PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(octUtilBenchmark PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES
examples/include/bucketBench.h
examples/src/bucketBench.cpp FEM/examples/include/heatMat.h)
#set_source_files_properties( tags PROPERTIES GENERATED true)
#add_custom_command ( OUTPUT tags
# COMMAND ctags -R --c++-kinds=+p --fields=+iaS --extra=+q .
# WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )
add_executable(bucketBench ${SOURCE_FILES})
install(TARGETS bucketBench RUNTIME DESTINATION bin)
target_link_libraries(bucketBench dendro5 ${MPI_LIBRARIES} m)
target_include_directories(bucketBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(bucketBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(bucketBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(bucketBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(bucketBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(bucketBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(bucketBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(bucketBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(bucketBench PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(bucketBench PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES
examples/include/mfreeTest.h
examples/src/mfreeTest.cpp)
add_executable(mfreeBench ${SOURCE_FILES})
install(TARGETS mfreeBench RUNTIME DESTINATION bin)
target_link_libraries(mfreeBench dendro5 ${LAPACK_LIBRARIES} ${MPI_LIBRARIES} m)
target_include_directories(mfreeBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(mfreeBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(mfreeBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(mfreeBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(mfreeBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(mfreeBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(mfreeBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(mfreeBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(mfreeBench PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(mfreeBench PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES
examples/include/meshBenchmark.h
examples/src/meshBenchmark.cpp
)
add_executable(meshBench ${SOURCE_FILES})
install(TARGETS meshBench RUNTIME DESTINATION bin)
target_link_libraries(meshBench dendro5 ${LAPACK_LIBRARIES} ${MPI_LIBRARIES} m)
target_include_directories(meshBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(meshBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(meshBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(meshBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(meshBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(meshBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(meshBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(meshBench PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(meshBench PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(meshBench PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES examples/src/meshE2NCheck.cpp)
add_executable(meshE2NCheck ${SOURCE_FILES})
install(TARGETS meshE2NCheck RUNTIME DESTINATION bin)
target_link_libraries(meshE2NCheck dendro5 ${LAPACK_LIBRARIES} ${MPI_LIBRARIES} m)
target_include_directories(meshE2NCheck PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(meshE2NCheck PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(meshE2NCheck PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(meshE2NCheck PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(meshE2NCheck PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(meshE2NCheck PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(meshE2NCheck PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(meshE2NCheck PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(meshE2NCheck PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(meshE2NCheck PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES FEM/examples/src/stencilExample.cpp)
add_executable(stencilExample ${SOURCE_FILES})
install(TARGETS stencilExample RUNTIME DESTINATION bin)
target_link_libraries(stencilExample dendro5 ${LAPACK_LIBRARIES} ${MPI_LIBRARIES} m)
target_include_directories(stencilExample PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(stencilExample PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(stencilExample PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(stencilExample PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(stencilExample PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(stencilExample PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(stencilExample PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(stencilExample PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(stencilExample PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(stencilExample PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES FEM/examples/src/testInterp.cpp)
add_executable(testInterp ${SOURCE_FILES})
install(TARGETS testInterp RUNTIME DESTINATION bin)
target_link_libraries(testInterp dendro5 ${LAPACK_LIBRARIES} ${MPI_LIBRARIES} m)
target_include_directories(testInterp PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(testInterp PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(testInterp PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(testInterp PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(testInterp PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(testInterp PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(testInterp PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(testInterp PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(testInterp PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(testInterp PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES examples/src/meshLooping.cpp )
add_executable(meshLoop ${SOURCE_FILES})
install(TARGETS meshLoop RUNTIME DESTINATION bin)
target_link_libraries(meshLoop dendro5 ${LAPACK_LIBRARIES} ${MPI_LIBRARIES} m)
target_include_directories(meshLoop PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(meshLoop PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(meshLoop PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(meshLoop PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(meshLoop PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(meshLoop PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(meshLoop PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(meshLoop PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(meshLoop PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(meshLoop PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES FEM/examples/src/refelExample.cpp)
add_executable(refEl ${SOURCE_FILES})
install(TARGETS refEl RUNTIME DESTINATION bin)
target_link_libraries(refEl dendro5 ${LAPACK_LIBRARIES} ${MPI_LIBRARIES} m)
target_include_directories(refEl PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(refEl PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(refEl PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(refEl PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(refEl PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(refEl PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(refEl PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(refEl PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(refEl PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(refEl PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES FEM/examples/src/refelOctreeExample.cpp)
add_executable(refElOctree ${SOURCE_FILES})
install(TARGETS refElOctree RUNTIME DESTINATION bin)
target_link_libraries(refElOctree dendro5 ${LAPACK_LIBRARIES} ${MPI_LIBRARIES} m)
target_include_directories(refElOctree PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(refElOctree PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(refElOctree PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(refElOctree PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(refElOctree PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(refElOctree PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(refElOctree PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(refElOctree PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(refElOctree PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(refElOctree PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES ODE/examples/transportEq.cpp)
add_executable(transportEq ${SOURCE_FILES})
install(TARGETS transportEq RUNTIME DESTINATION bin)
target_link_libraries(transportEq dendro5 ${LAPACK_LIBRARIES} ${MPI_LIBRARIES} m)
target_include_directories(transportEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(transportEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(transportEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(transportEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(transportEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(transportEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(transportEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(transportEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(transportEq PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(transportEq PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES FEM/examples/src/laplace.cpp)
add_executable(laplaceEq ${SOURCE_FILES})
install(TARGETS laplaceEq RUNTIME DESTINATION bin)
target_link_libraries(laplaceEq dendro5 ${LAPACK_LIBRARIES} ${MPI_LIBRARIES} m)
target_include_directories(laplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(laplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(laplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(laplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(laplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(laplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(laplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(laplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(laplaceEq PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(laplaceEq PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES FEM/examples/include/heatMat.h
FEM/examples/include/heatVec.h
FEM/examples/src/heatMat.cpp
FEM/examples/src/heatVec.cpp
FEM/examples/src/heatEq.cpp)
add_executable(heatEq ${SOURCE_FILES})
install(TARGETS heatEq RUNTIME DESTINATION bin)
target_link_libraries(heatEq dendro5 ${LAPACK_LIBRARIES} ${MPI_LIBRARIES} m)
target_include_directories(heatEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(heatEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(heatEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(heatEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(heatEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/examples/include)
target_include_directories(heatEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(heatEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(heatEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(heatEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(heatEq PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(heatEq PRIVATE ${GSL_INCLUDE_DIRS})
set(SOURCE_FILES FEM/examples/src/sfcLaplace.cpp)
add_executable(sfcLaplaceEq ${SOURCE_FILES})
install(TARGETS sfcLaplaceEq RUNTIME DESTINATION bin)
target_link_libraries(sfcLaplaceEq dendro5 ${LAPACK_LIBRARIES} ${MPI_LIBRARIES} m)
target_include_directories(sfcLaplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
target_include_directories(sfcLaplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/test/include)
target_include_directories(sfcLaplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/examples/include)
target_include_directories(sfcLaplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/FEM/include)
target_include_directories(sfcLaplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/ODE/include)
target_include_directories(sfcLaplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/LinAlg/include)
target_include_directories(sfcLaplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/vtk/include)
target_include_directories(sfcLaplaceEq PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/IO/zlib/inc)
target_include_directories(sfcLaplaceEq PRIVATE ${MPI_INCLUDE_PATH})
target_include_directories(sfcLaplaceEq PRIVATE ${GSL_INCLUDE_DIRS})
add_subdirectory(NLSigma)
add_subdirectory(QuadGrav)
add_subdirectory(MassGrav)