From 2fc2892fc9c85969595f359fde75e174a2adc628 Mon Sep 17 00:00:00 2001
From: Carlos F Buen Abad Najar <cfbuenabadn@berkeley.edu>
Date: Fri, 18 Aug 2023 00:51:02 -0500
Subject: [PATCH] removed unnecessary checkpoints

---
 psix/junctions2psi.py | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

diff --git a/psix/junctions2psi.py b/psix/junctions2psi.py
index 35d3206..9078ee8 100644
--- a/psix/junctions2psi.py
+++ b/psix/junctions2psi.py
@@ -233,12 +233,8 @@ def junctions_dir_to_psi(
         if len(cell_list) == 0:
             cell_list = psi.columns
         mrna = tpm2mrna(tpm_file, cell_list, dtype=dtype)
-        ##### New thing
-        self.mrna_checkpoint = mrna
-        self.psi_checkpoint = psi
-        self.constitutive_sj_checkpoint = constitutive_sj
+        
         cells = psi.columns.intersection(mrna.columns)
-        self.cells_checkpoint = cells
         mrna = mrna[cells]
         psi = psi[cells]
         constitutive_sj = constitutive_sj[cells]