Files deployed that were not updated

[bbarnwell]

Hi - we have this script running and it works great for both our Dev and Prod environments. A strange thing happened today - I deployed a couple of changes to our Dev and it worked fine. Then I merged those changes with our Master branch and deployed to Prod. This time it deployed the changed files, but the whole folder of one of our plugins that was not touched. Any ideas?

Update: on closer inspection it looks like folders were updated, but not files themselves. Strange.