From 5fd2db1e9c0151aa7771735331f9d74ec41bd80b Mon Sep 17 00:00:00 2001
From: Max Cummins <max.l.cummins@gmail.com>
Date: Mon, 16 Sep 2024 12:02:13 +0930
Subject: [PATCH] add main.nf.test.snap and update main.nf.test as per pull
 request #6636

---
 modules/nf-core/shigapass/tests/main.nf.test  |  8 +---
 .../nf-core/shigapass/tests/main.nf.test.snap | 44 ++++++++++++++-----
 2 files changed, 35 insertions(+), 17 deletions(-)

diff --git a/modules/nf-core/shigapass/tests/main.nf.test b/modules/nf-core/shigapass/tests/main.nf.test
index 2e4044a8333f..e68e454190fe 100644
--- a/modules/nf-core/shigapass/tests/main.nf.test
+++ b/modules/nf-core/shigapass/tests/main.nf.test
@@ -10,9 +10,6 @@ nextflow_process {
     test("candidatus_portiera_aleyrodidarum - genome.fasta") {
 
         when {
-            params {
-                outdir = "$outputDir"
-            }
             process {
                 """
                 input[0] = [
@@ -36,9 +33,6 @@ nextflow_process {
         options "-stub"
 
         when {
-            params {
-                outdir = "$outputDir"
-            }
             process {
                 """
                 input[0] = [
@@ -58,4 +52,4 @@ nextflow_process {
 
     }
 
-}
+}
\ No newline at end of file
diff --git a/modules/nf-core/shigapass/tests/main.nf.test.snap b/modules/nf-core/shigapass/tests/main.nf.test.snap
index 4b1f311904dc..15409e2ac394 100644
--- a/modules/nf-core/shigapass/tests/main.nf.test.snap
+++ b/modules/nf-core/shigapass/tests/main.nf.test.snap
@@ -3,16 +3,28 @@
         "content": [
             {
                 "0": [
-                    
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.csv:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
                 ],
                 "1": [
-                    
+                    "versions.yml:md5,cbfa0021091852d8fa9a1ce14f95b669"
                 ],
                 "report": [
-                    
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.csv:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
                 ],
                 "versions": [
-                    
+                    "versions.yml:md5,cbfa0021091852d8fa9a1ce14f95b669"
                 ]
             }
         ],
@@ -20,22 +32,34 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-09-13T11:41:51.692438"
+        "timestamp": "2024-09-16T12:00:38.954924"
     },
     "candidatus_portiera_aleyrodidarum - genome.fasta": {
         "content": [
             {
                 "0": [
-                    
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.csv:md5,7bfae0e8ac3429194b3c1c2addd2e1ea"
+                    ]
                 ],
                 "1": [
-                    
+                    "versions.yml:md5,cbfa0021091852d8fa9a1ce14f95b669"
                 ],
                 "report": [
-                    
+                    [
+                        {
+                            "id": "test",
+                            "single_end": false
+                        },
+                        "test.csv:md5,7bfae0e8ac3429194b3c1c2addd2e1ea"
+                    ]
                 ],
                 "versions": [
-                    
+                    "versions.yml:md5,cbfa0021091852d8fa9a1ce14f95b669"
                 ]
             }
         ],
@@ -43,6 +67,6 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-09-13T11:41:48.121725"
+        "timestamp": "2024-09-16T12:00:24.613691"
     }
 }
\ No newline at end of file