diff --git a/CHANGELOG.md b/CHANGELOG.md index fa640ab..0315868 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,4 +1,14 @@ # CHANGELOG +v1.3.7 (May 2020) +- Enhancement: check that provided phenotypes are of numeric type +- Bugfix: properly report all filtered variants +- Bugfix: don't crash if regression fails for missing data +- Bugfix for whole genome regression and lineages +- Bugfix/docs: properly report that the covariates file should have a header +- scripts/summarise_annotations.py can work with unadjusted p-values (new option, thanks to Lindsay Clark) +- scripts/phylogeny_distance.py: no need to reroot twice with updated dendropy +- CI: transition to GitHub actions + v1.3.6 (May 2020) - Bugfix for missing variants in VCF files (now properly handled) - Bugfixes for k-mer mapping (lack of annotation, bwa fastmap with many hits diff --git a/docs/conf.py b/docs/conf.py index e65a7f4..8044010 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -76,9 +76,9 @@ # built documents. # # The short X.Y version. -version = '1.3.6' +version = '1.3.7' # The full version, including alpha/beta/rc tags. -release = '1.3.6' +release = '1.3.7' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/pyseer/__init__.py b/pyseer/__init__.py index da16aa1..8bb3696 100644 --- a/pyseer/__init__.py +++ b/pyseer/__init__.py @@ -2,4 +2,4 @@ '''Python reimplementation of SEER for bacterial GWAS''' -__version__ = '1.3.7-dev' +__version__ = '1.3.7' diff --git a/setup.py b/setup.py index 3324010..80cb6e9 100644 --- a/setup.py +++ b/setup.py @@ -37,7 +37,7 @@ def find_version(*file_paths): long_description_content_type='text/markdown', url='https://github.com/mgalardini/pyseer', author='Marco Galardini and John Lees', - author_email='marco@ebi.ac.uk', + author_email='galardini.marco@mh-hannover.de', license='Apache Software License', classifiers=[ 'Development Status :: 4 - Beta',