From 40ad84e0622805f0007d1fe188b6baa0ca88e1bf Mon Sep 17 00:00:00 2001 From: Mark Andrew Miller Date: Wed, 4 Oct 2023 15:33:57 -0400 Subject: [PATCH] builds locally --- src/schema/mixs.yaml | 1500 +++++++++++++++++++++--------------------- src/schema/nmdc.yaml | 2 +- 2 files changed, 751 insertions(+), 751 deletions(-) diff --git a/src/schema/mixs.yaml b/src/schema/mixs.yaml index 59db008b49..2cb2b65957 100644 --- a/src/schema/mixs.yaml +++ b/src/schema/mixs.yaml @@ -33,54 +33,79 @@ subsets: description: A combination of a checklist and a package from_schema: http://w3id.org/mixs/terms enums: - hcr_enum: + samp_md_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Oil Reservoir: {} - Gas Reservoir: {} - Oil Sand: {} - Coalbed: {} - Shale: {} - Tight Oil Reservoir: {} - Tight Gas Reservoir: {} + DF: {} + RT: {} + KB: {} + MSL: {} other: {} - rel_samp_loc_enum: + filter_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - edge of car: {} - center of car: {} - under a seat: {} - ceil_finish_mat_enum: + particulate air filter: {} + chemical air filter: {} + low-MERV pleated media: {} + HEPA: {} + electrostatic: {} + gas-phase or ultraviolet air treatments: {} + vis_media_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - drywall: {} - mineral fibre: {} - tiles: {} - PVC: {} - plasterboard: {} - metal: {} - fiberglass: {} - stucco: {} - mineral wool/calcium silicate: {} - wood: {} - floor_water_mold_enum: + photos: {} + videos: {} + commonly of the building: {} + site context (adjacent buildings, vegetation, terrain, streets): {} + interiors: {} + equipment: {} + 3D scans: {} + ceil_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - mold odor: {} - wet floor: {} - water stains: {} - wall discoloration: {} - floor discoloration: {} - ceiling discoloration: {} - peeling paint or wallpaper: {} - bulging walls: {} - condensation: {} - substructure_type_enum: + cathedral: {} + dropped: {} + concave: {} + barrel-shaped: {} + coffered: {} + cove: {} + stretched: {} + soil_horizon_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - crawlspace: {} - slab on grade: {} - basement: {} + O horizon: {} + A horizon: {} + E horizon: {} + B horizon: {} + C horizon: {} + R layer: {} + Permafrost: {} + M horizon: {} + drainage_class_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + very poorly: {} + poorly: {} + somewhat poorly: {} + moderately well: {} + well: {} + excessively drained: {} + build_docs_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + building information model: {} + commissioning report: {} + complaint logs: {} + contract administration: {} + cost estimate: {} + janitorial schedules or logs: {} + maintenance plans: {} + schedule: {} + sections: {} + shop drawings: {} + submittals: {} + ventilation system: {} + windows: {} indoor_surf_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -92,17 +117,22 @@ enums: vent cover: {} window: {} wall: {} - ext_wall_orient_enum: + organism_count_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} - northeast: {} - southeast: {} - southwest: {} - northwest: {} + ATP: {} + MPN: {} + other: {} + floor_struc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + balcony: {} + floating floor: {} + glass floor: {} + raised floor: {} + sprung floor: {} + wood-framed: {} + concrete: {} plant_growth_med_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -115,144 +145,168 @@ enums: soil: {} vermiculite: {} water: {} - room_loc_enum: + door_direct_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - corner room: {} - interior room: {} - exterior wall: {} - sr_geol_age_enum: + inward: {} + outward: {} + sideways: {} + quad_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Archean: {} - Cambrian: {} - Carboniferous: {} - Cenozoic: {} - Cretaceous: {} - Devonian: {} - Jurassic: {} - Mesozoic: {} - Neogene: {} - Ordovician: {} - Paleogene: {} - Paleozoic: {} - Permian: {} - Precambrian: {} - Proterozoic: {} - Silurian: {} - Triassic: {} + North side: {} + West side: {} + South side: {} + East side: {} + build_occup_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + office: {} + market: {} + restaurant: {} + residence: {} + school: {} + residential: {} + commercial: {} + low rise: {} + high rise: {} + wood framed: {} + health care: {} + airport: {} + sports complex: {} + samp_capt_status_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + active surveillance in response to an outbreak: {} + active surveillance not initiated by an outbreak: {} + farm sample: {} + market sample: {} other: {} - mech_struc_enum: + door_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - subway: {} - coach: {} - carriage: {} - elevator: {} - escalator: {} - boat: {} - train: {} - car: {} - bus: {} - ext_window_orient_enum: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible wear: {} + room_samp_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} - northeast: {} - southeast: {} - southwest: {} - northwest: {} - season_use_enum: + north corner: {} + south corner: {} + west corner: {} + east corner: {} + northeast corner: {} + northwest corner: {} + southeast corner: {} + southwest corner: {} + center: {} + depos_env_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Spring: {} - Summer: {} - Fall: {} - Winter: {} - samp_weather_enum: + Continental - Alluvial: {} + Continental - Aeolian: {} + Continental - Fluvial: {} + Continental - Lacustrine: {} + Transitional - Deltaic: {} + Transitional - Tidal: {} + Transitional - Lagoonal: {} + Transitional - Beach: {} + Transitional - Lake: {} + Marine - Shallow: {} + Marine - Deep: {} + Marine - Reef: {} + Other - Evaporite: {} + Other - Glacial: {} + Other - Volcanic: {} + other: {} + rel_samp_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - clear sky: {} - cloudy: {} - foggy: {} - hail: {} - rain: {} - snow: {} - sleet: {} - sunny: {} - windy: {} - room_condt_enum: + edge of car: {} + center of car: {} + under a seat: {} + window_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - new: {} - visible wear: {} - needs repair: {} damaged: {} + needs repair: {} + new: {} rupture: {} - visible signs of mold/mildew: {} - host_sex_enum: + visible wear: {} + specific_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - female: {} - hermaphrodite: {} - male: {} - neuter: {} - biol_stat_enum: + operation: {} + as built: {} + construction: {} + bid: {} + design: {} + photos: {} + lithology_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - wild: {} - natural: {} - semi-natural: {} - inbred line: {} - breeder's line: {} - hybrid: {} - clonal selection: {} - mutant: {} - floor_finish_mat_enum: + Basement: {} + Chalk: {} + Chert: {} + Coal: {} + Conglomerate: {} + Diatomite: {} + Dolomite: {} + Limestone: {} + Sandstone: {} + Shale: {} + Siltstone: {} + Volcanic: {} + other: {} + floor_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - tile: {} - wood strip or parquet: {} - carpet: {} - rug: {} - laminate wood: {} - lineoleum: {} - vinyl composition tile: {} - sheet vinyl: {} - stone: {} - bamboo: {} - cork: {} - terrazo: {} - concrete: {} - none: {} - sealed: {} - clear finish: {} - paint: {} - none or unfinished: {} - tidal_stage_enum: + new: {} + visible wear: {} + needs repair: {} + damaged: {} + rupture: {} + door_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - low tide: {} - ebb tide: {} - flood tide: {} - high tide: {} - profile_position_enum: + north: {} + south: {} + east: {} + west: {} + furniture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - summit: {} - shoulder: {} - backslope: {} - footslope: {} - toeslope: {} - train_line_enum: + cabinet: {} + chair: {} + desks: {} + window_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - red: {} - green: {} - orange: {} + single-hung sash window: {} + horizontal sash window: {} + fixed window: {} + sr_kerog_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + Type I: {} + Type II: {} + Type III: {} + Type IV: {} + other: {} + mech_struc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + subway: {} + coach: {} + carriage: {} + elevator: {} + escalator: {} + boat: {} + train: {} + car: {} + bus: {} hc_produced_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -262,21 +316,14 @@ enums: Bitumen: {} Coalbed Methane: {} other: {} - window_cond_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - damaged: {} - needs repair: {} - new: {} - rupture: {} - visible wear: {} - growth_habit_enum: + door_type_metal_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - erect: {} - semi-erect: {} - spreading: {} - prostrate: {} + collapsible: {} + corrugated steel: {} + hollow: {} + rolling shutters: {} + steel plate: {} fao_class_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -306,48 +353,6 @@ enums: Solonetz: {} Vertisols: {} Yermosols: {} - freq_clean_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - Daily: {} - Weekly: {} - Monthly: {} - Quarterly: {} - Annually: {} - other: {} - floor_struc_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - balcony: {} - floating floor: {} - glass floor: {} - raised floor: {} - sprung floor: {} - wood-framed: {} - concrete: {} - quad_pos_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - North side: {} - West side: {} - South side: {} - East side: {} - lithology_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - Basement: {} - Chalk: {} - Chert: {} - Coal: {} - Conglomerate: {} - Diatomite: {} - Dolomite: {} - Limestone: {} - Sandstone: {} - Shale: {} - Siltstone: {} - Volcanic: {} - other: {} door_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -361,31 +366,28 @@ enums: vinyl: {} wood: {} wood/plastic composite: {} - shading_device_cond_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - damaged: {} - needs repair: {} - new: {} - rupture: {} - visible wear: {} - build_occup_type_enum: + sr_geol_age_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - office: {} - market: {} - restaurant: {} - residence: {} - school: {} - residential: {} - commercial: {} - low rise: {} - high rise: {} - wood framed: {} - health care: {} - airport: {} - sports complex: {} - floor_cond_enum: + Archean: {} + Cambrian: {} + Carboniferous: {} + Cenozoic: {} + Cretaceous: {} + Devonian: {} + Jurassic: {} + Mesozoic: {} + Neogene: {} + Ordovician: {} + Paleogene: {} + Paleozoic: {} + Permian: {} + Precambrian: {} + Proterozoic: {} + Silurian: {} + Triassic: {} + other: {} + room_condt_enum: from_schema: http://w3id.org/mixs/terms permissible_values: new: {} @@ -393,13 +395,43 @@ enums: needs repair: {} damaged: {} rupture: {} - samp_capt_status_enum: + visible signs of mold/mildew: {} + train_stop_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - active surveillance in response to an outbreak: {} - active surveillance not initiated by an outbreak: {} - farm sample: {} - market sample: {} + end: {} + mid: {} + downtown: {} + window_loc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + north: {} + south: {} + east: {} + west: {} + heat_cool_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + radiant system: {} + heat pump: {} + forced air system: {} + steam forced heat: {} + wood stove: {} + water_feat_type_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + fountain: {} + pool: {} + standing feature: {} + stream: {} + waterfall: {} + sr_lithology_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + Clastic: {} + Carbonate: {} + Coal: {} + Biosilicieous: {} other: {} biotic_relationship_enum: from_schema: http://w3id.org/mixs/terms @@ -408,11 +440,19 @@ enums: parasite: {} commensal: {} symbiont: {} - cur_land_use_enum: + samp_subtype_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - badlands: {} - cities: {} + oil phase: {} + water phase: {} + biofilm: {} + not applicable: {} + other: {} + cur_land_use_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + badlands: {} + cities: {} conifers: annotations: originally: conifers (e.g. pine,spruce,fir,cypress) @@ -534,50 +574,48 @@ enums: originally: vine crops (grapes) examples: - value: grapes - wall_finish_mat_enum: + oxy_stat_samp_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - plaster: {} - gypsum plaster: {} - veneer plaster: {} - gypsum board: {} - tile: {} - terrazzo: {} - stone facing: {} - acoustical treatment: {} - wood: {} - metal: {} - masonry: {} - ceil_type_enum: + aerobic: {} + anaerobic: {} + other: {} + window_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - cathedral: {} - dropped: {} - concave: {} - barrel-shaped: {} - coffered: {} - cove: {} - stretched: {} - gender_restroom_enum: + clad: {} + fiberglass: {} + metal: {} + vinyl: {} + wood: {} + window_horiz_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - all gender: {} - female: {} - gender neurtral: {} - male: {} - male and female: {} - unisex: {} - vis_media_enum: + left: {} + middle: {} + right: {} + floor_finish_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - photos: {} - videos: {} - commonly of the building: {} - site context (adjacent buildings, vegetation, terrain, streets): {} - interiors: {} - equipment: {} - 3D scans: {} - room_type_enum: + tile: {} + wood strip or parquet: {} + carpet: {} + rug: {} + laminate wood: {} + lineoleum: {} + vinyl composition tile: {} + sheet vinyl: {} + stone: {} + bamboo: {} + cork: {} + terrazo: {} + concrete: {} + none: {} + sealed: {} + clear finish: {} + paint: {} + none or unfinished: {} + room_connected_enum: from_schema: http://w3id.org/mixs/terms permissible_values: attic: {} @@ -589,47 +627,76 @@ enums: hallway: {} kitchen: {} mail room: {} - private office: {} - open office: {} + office: {} stairwell: {} - ',restroom': {} - lobby: {} - vestibule: {} - mechanical or electrical room: {} - data center: {} - laboratory_wet: {} - laboratory_dry: {} - gymnasium: {} - natatorium: {} - auditorium: {} - lockers: {} - cafe: {} - warehouse: {} - ceil_texture_enum: + ext_wall_orient_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - crows feet: {} - crows-foot stomp: {} - double skip: {} - hawk and trowel: {} - knockdown: {} - popcorn: {} - orange peel: {} - rosebud stomp: {} - Santa-Fe texture: {} - skip trowel: {} - smooth: {} - stomp knockdown: {} - swirl: {} - drainage_class_enum: + north: {} + south: {} + east: {} + west: {} + northeast: {} + southeast: {} + southwest: {} + northwest: {} + biol_stat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - very poorly: {} - poorly: {} - somewhat poorly: {} - moderately well: {} - well: {} - excessively drained: {} + wild: {} + natural: {} + semi-natural: {} + inbred line: {} + breeder's line: {} + hybrid: {} + clonal selection: {} + mutant: {} + door_type_wood_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + bettened and ledged: {} + battened: {} + ledged and braced: {} + ledged and framed: {} + ledged, braced and frame: {} + framed and paneled: {} + glashed or sash: {} + flush: {} + louvered: {} + wire gauged: {} + hcr_geol_age_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + Archean: {} + Cambrian: {} + Carboniferous: {} + Cenozoic: {} + Cretaceous: {} + Devonian: {} + Jurassic: {} + Mesozoic: {} + Neogene: {} + Ordovician: {} + Paleogene: {} + Paleozoic: {} + Permian: {} + Precambrian: {} + Proterozoic: {} + Silurian: {} + Triassic: {} + other: {} + floor_water_mold_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + mold odor: {} + wet floor: {} + water stains: {} + wall discoloration: {} + floor discoloration: {} + ceiling discoloration: {} + peeling paint or wallpaper: {} + bulging walls: {} + condensation: {} light_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -638,24 +705,22 @@ enums: desk lamp: {} flourescent lights: {} none: {} - oxy_stat_samp_enum: + int_wall_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - aerobic: {} - anaerobic: {} - other: {} - tillage_enum: + new: {} + visible wear: {} + needs repair: {} + damaged: {} + rupture: {} + shading_device_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - drill: {} - cutting disc: {} - ridge till: {} - strip tillage: {} - zonal tillage: {} - chisel: {} - tined: {} - mouldboard: {} - disc plough: {} + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible wear: {} ceil_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -664,182 +729,29 @@ enums: needs repair: {} damaged: {} rupture: {} - weekday_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - Monday: {} - Tuesday: {} - Wednesday: {} - Thursday: {} - Friday: {} - Saturday: {} - Sunday: {} - handidness_enum: + door_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - ambidexterity: {} - left handedness: {} - mixed-handedness: {} - right handedness: {} - indoor_space_enum: + composite: {} + metal: {} + wooden: {} + door_move_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - bedroom: {} - office: {} - bathroom: {} - foyer: {} - kitchen: {} - locker room: {} - hallway: {} - elevator: {} - window_vert_pos_enum: + collapsible: {} + folding: {} + revolving: {} + rolling shutter: {} + sliding: {} + swinging: {} + growth_habit_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - bottom: {} - middle: {} - top: {} - low: {} - high: {} - door_loc_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - north: {} - south: {} - east: {} - west: {} - door_comp_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - metal covered: {} - revolving: {} - sliding: {} - telescopic: {} - building_setting_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - urban: {} - suburban: {} - exurban: {} - rural: {} - heat_deliv_loc_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - north: {} - south: {} - east: {} - west: {} - window_cover_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - blinds: {} - curtains: {} - none: {} - sr_lithology_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - Clastic: {} - Carbonate: {} - Coal: {} - Biosilicieous: {} - other: {} - samp_subtype_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - oil phase: {} - water phase: {} - biofilm: {} - not applicable: {} - other: {} - room_connected_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - attic: {} - bathroom: {} - closet: {} - conference room: {} - elevator: {} - examining room: {} - hallway: {} - kitchen: {} - mail room: {} - office: {} - stairwell: {} - hcr_geol_age_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - Archean: {} - Cambrian: {} - Carboniferous: {} - Cenozoic: {} - Cretaceous: {} - Devonian: {} - Jurassic: {} - Mesozoic: {} - Neogene: {} - Ordovician: {} - Paleogene: {} - Paleozoic: {} - Permian: {} - Precambrian: {} - Proterozoic: {} - Silurian: {} - Triassic: {} - other: {} - build_docs_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - building information model: {} - commissioning report: {} - complaint logs: {} - contract administration: {} - cost estimate: {} - janitorial schedules or logs: {} - maintenance plans: {} - schedule: {} - sections: {} - shop drawings: {} - submittals: {} - ventilation system: {} - windows: {} - depos_env_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - Continental - Alluvial: {} - Continental - Aeolian: {} - Continental - Fluvial: {} - Continental - Lacustrine: {} - Transitional - Deltaic: {} - Transitional - Tidal: {} - Transitional - Lagoonal: {} - Transitional - Beach: {} - Transitional - Lake: {} - Marine - Shallow: {} - Marine - Deep: {} - Marine - Reef: {} - Other - Evaporite: {} - Other - Glacial: {} - Other - Volcanic: {} - other: {} - soil_horizon_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - O horizon: {} - A horizon: {} - E horizon: {} - B horizon: {} - C horizon: {} - R layer: {} - Permafrost: {} - M horizon: {} - train_stat_loc_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - south station above ground: {} - south station underground: {} - south station amtrak: {} - forest hills: {} - riverside: {} - surf_material_enum: + erect: {} + semi-erect: {} + spreading: {} + prostrate: {} + surf_material_enum: from_schema: http://w3id.org/mixs/terms permissible_values: adobe: {} @@ -857,49 +769,17 @@ enums: tile: {} vinyl: {} wood: {} - int_wall_cond_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - new: {} - visible wear: {} - needs repair: {} - damaged: {} - rupture: {} - door_type_metal_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - collapsible: {} - corrugated steel: {} - hollow: {} - rolling shutters: {} - steel plate: {} - door_type_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - composite: {} - metal: {} - wooden: {} - door_type_wood_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - bettened and ledged: {} - battened: {} - ledged and braced: {} - ledged and framed: {} - ledged, braced and frame: {} - framed and paneled: {} - glashed or sash: {} - flush: {} - louvered: {} - wire gauged: {} - door_cond_enum: + drawings_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - damaged: {} - needs repair: {} - new: {} - rupture: {} - visible wear: {} + operation: {} + as built: {} + construction: {} + bid: {} + design: {} + building navigation map: {} + diagram: {} + sketch: {} sr_dep_env_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -908,14 +788,28 @@ enums: Fluviomarine: {} Marine: {} other: {} - samp_md_enum: + gender_restroom_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - DF: {} - RT: {} - KB: {} - MSL: {} - other: {} + all gender: {} + female: {} + gender neurtral: {} + male: {} + male and female: {} + unisex: {} + ceil_finish_mat_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + drywall: {} + mineral fibre: {} + tiles: {} + PVC: {} + plasterboard: {} + metal: {} + fiberglass: {} + stucco: {} + mineral wool/calcium silicate: {} + wood: {} samp_collect_point_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -926,142 +820,212 @@ enums: separator: {} storage tank: {} other: {} - window_mat_enum: + samp_weather_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - clad: {} - fiberglass: {} - metal: {} - vinyl: {} - wood: {} + clear sky: {} + cloudy: {} + foggy: {} + hail: {} + rain: {} + snow: {} + sleet: {} + sunny: {} + windy: {} + weekday_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + Monday: {} + Tuesday: {} + Wednesday: {} + Thursday: {} + Friday: {} + Saturday: {} + Sunday: {} + profile_position_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + summit: {} + shoulder: {} + backslope: {} + footslope: {} + toeslope: {} + occup_document_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + automated count: {} + estimate: {} + manual count: {} + videos: {} + ext_window_orient_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + north: {} + south: {} + east: {} + west: {} + northeast: {} + southeast: {} + southwest: {} + northwest: {} arch_struc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: building: {} shed: {} home: {} - furniture_enum: - from_schema: http://w3id.org/mixs/terms - permissible_values: - cabinet: {} - chair: {} - desks: {} - samp_dis_stage_enum: + wall_texture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - dissemination: {} - growth and reproduction: {} - infection: {} - inoculation: {} - penetration: {} - other: {} - door_move_enum: + crows feet: {} + crows-foot stomp: {} + '': {} + double skip: {} + hawk and trowel: {} + knockdown: {} + popcorn: {} + orange peel: {} + rosebud stomp: {} + Santa-Fe texture: {} + skip trowel: {} + smooth: {} + stomp knockdown: {} + swirl: {} + door_comp_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - collapsible: {} - folding: {} + metal covered: {} revolving: {} - rolling shutter: {} sliding: {} - swinging: {} - occup_document_enum: + telescopic: {} + wall_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - automated count: {} - estimate: {} - manual count: {} - videos: {} - plant_sex_enum: + north: {} + south: {} + east: {} + west: {} + season_use_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Androdioecious: {} - Androecious: {} - Androgynous: {} - Androgynomonoecious: {} - Andromonoecious: {} - Bisexual: {} - Dichogamous: {} - Diclinous: {} - Dioecious: {} - Gynodioecious: {} - Gynoecious: {} - Gynomonoecious: {} - Hermaphroditic: {} - Imperfect: {} - Monoclinous: {} - Monoecious: {} - Perfect: {} - Polygamodioecious: {} - Polygamomonoecious: {} - Polygamous: {} - Protandrous: {} - Protogynous: {} - Subandroecious: {} - Subdioecious: {} - Subgynoecious: {} - Synoecious: {} - Trimonoecious: {} - Trioecious: {} - Unisexual: {} - drawings_enum: + Spring: {} + Summer: {} + Fall: {} + Winter: {} + tillage_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - operation: {} - as built: {} - construction: {} - bid: {} - design: {} - building navigation map: {} - diagram: {} - sketch: {} - window_type_enum: + drill: {} + cutting disc: {} + ridge till: {} + strip tillage: {} + zonal tillage: {} + chisel: {} + tined: {} + mouldboard: {} + disc plough: {} + samp_floor_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - single-hung sash window: {} - horizontal sash window: {} - fixed window: {} - wall_const_type_enum: + 1st floor: {} + 2nd floor: {} + basement: {} + lobby: {} + handidness_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - frame construction: {} - joisted masonry: {} - light noncombustible: {} - masonry noncombustible: {} - modified fire resistive: {} - fire resistive: {} - heat_cool_type_enum: + ambidexterity: {} + left handedness: {} + mixed-handedness: {} + right handedness: {} + surf_air_cont_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - radiant system: {} - heat pump: {} - forced air system: {} - steam forced heat: {} - wood stove: {} - room_samp_pos_enum: + dust: {} + organic matter: {} + particulate matter: {} + volatile organic compounds: {} + biological contaminants: {} + radon: {} + nutrients: {} + biocides: {} + shading_device_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north corner: {} - south corner: {} - west corner: {} - east corner: {} - northeast corner: {} - northwest corner: {} - southeast corner: {} - southwest corner: {} - center: {} - window_horiz_pos_enum: + bahama shutters: {} + exterior roll blind: {} + gambrel awning: {} + hood awning: {} + porchroller awning: {} + sarasota shutters: {} + slatted aluminum: {} + solid aluminum awning: {} + sun screen: {} + tree: {} + trellis: {} + venetian awning: {} + room_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - left: {} - middle: {} - right: {} - window_loc_enum: + corner room: {} + interior room: {} + exterior wall: {} + wall_surf_treatment_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + painted: {} + wall paper: {} + no treatment: {} + paneling: {} + stucco: {} + fabric: {} + ceil_texture_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + crows feet: {} + crows-foot stomp: {} + double skip: {} + hawk and trowel: {} + knockdown: {} + popcorn: {} + orange peel: {} + rosebud stomp: {} + Santa-Fe texture: {} + skip trowel: {} + smooth: {} + stomp knockdown: {} + swirl: {} + heat_deliv_loc_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + north: {} + south: {} + east: {} + west: {} + tidal_stage_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + low tide: {} + ebb tide: {} + flood tide: {} + high tide: {} + window_cover_enum: + from_schema: http://w3id.org/mixs/terms + permissible_values: + blinds: {} + curtains: {} + none: {} + indoor_space_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} + bedroom: {} + office: {} + bathroom: {} + foyer: {} + kitchen: {} + locker room: {} + hallway: {} + elevator: {} sediment_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: @@ -1069,124 +1033,160 @@ enums: cosmogenous: {} hydrogenous: {} lithogenous: {} - train_stop_loc_enum: + plant_sex_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - end: {} - mid: {} - downtown: {} - samp_floor_enum: + Androdioecious: {} + Androecious: {} + Androgynous: {} + Androgynomonoecious: {} + Andromonoecious: {} + Bisexual: {} + Dichogamous: {} + Diclinous: {} + Dioecious: {} + Gynodioecious: {} + Gynoecious: {} + Gynomonoecious: {} + Hermaphroditic: {} + Imperfect: {} + Monoclinous: {} + Monoecious: {} + Perfect: {} + Polygamodioecious: {} + Polygamomonoecious: {} + Polygamous: {} + Protandrous: {} + Protogynous: {} + Subandroecious: {} + Subdioecious: {} + Subgynoecious: {} + Synoecious: {} + Trimonoecious: {} + Trioecious: {} + Unisexual: {} + host_sex_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - 1st floor: {} - 2nd floor: {} - basement: {} - lobby: {} - door_direct_enum: + female: {} + hermaphrodite: {} + male: {} + neuter: {} + samp_dis_stage_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - inward: {} - outward: {} - sideways: {} - sr_kerog_type_enum: + dissemination: {} + growth and reproduction: {} + infection: {} + inoculation: {} + penetration: {} + other: {} + train_line_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - Type I: {} - Type II: {} - Type III: {} - Type IV: {} - other: {} - wall_loc_enum: + red: {} + green: {} + orange: {} + wall_const_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - north: {} - south: {} - east: {} - west: {} - organism_count_enum: + frame construction: {} + joisted masonry: {} + light noncombustible: {} + masonry noncombustible: {} + modified fire resistive: {} + fire resistive: {} + building_setting_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - ATP: {} - MPN: {} - other: {} - wall_texture_enum: + urban: {} + suburban: {} + exurban: {} + rural: {} + wall_finish_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - crows feet: {} - crows-foot stomp: {} - '': {} - double skip: {} - hawk and trowel: {} - knockdown: {} - popcorn: {} - orange peel: {} - rosebud stomp: {} - Santa-Fe texture: {} - skip trowel: {} - smooth: {} - stomp knockdown: {} - swirl: {} - shading_device_type_enum: + plaster: {} + gypsum plaster: {} + veneer plaster: {} + gypsum board: {} + tile: {} + terrazzo: {} + stone facing: {} + acoustical treatment: {} + wood: {} + metal: {} + masonry: {} + hcr_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - bahama shutters: {} - exterior roll blind: {} - gambrel awning: {} - hood awning: {} - porchroller awning: {} - sarasota shutters: {} - slatted aluminum: {} - solid aluminum awning: {} - sun screen: {} - tree: {} - trellis: {} - venetian awning: {} - surf_air_cont_enum: + Oil Reservoir: {} + Gas Reservoir: {} + Oil Sand: {} + Coalbed: {} + Shale: {} + Tight Oil Reservoir: {} + Tight Gas Reservoir: {} + other: {} + room_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - dust: {} - organic matter: {} - particulate matter: {} - volatile organic compounds: {} - biological contaminants: {} - radon: {} - nutrients: {} - biocides: {} - water_feat_type_enum: + attic: {} + bathroom: {} + closet: {} + conference room: {} + elevator: {} + examining room: {} + hallway: {} + kitchen: {} + mail room: {} + private office: {} + open office: {} + stairwell: {} + ',restroom': {} + lobby: {} + vestibule: {} + mechanical or electrical room: {} + data center: {} + laboratory_wet: {} + laboratory_dry: {} + gymnasium: {} + natatorium: {} + auditorium: {} + lockers: {} + cafe: {} + warehouse: {} + substructure_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - fountain: {} - pool: {} - standing feature: {} - stream: {} - waterfall: {} - wall_surf_treatment_enum: + crawlspace: {} + slab on grade: {} + basement: {} + train_stat_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - painted: {} - wall paper: {} - no treatment: {} - paneling: {} - stucco: {} - fabric: {} - filter_type_enum: + south station above ground: {} + south station underground: {} + south station amtrak: {} + forest hills: {} + riverside: {} + freq_clean_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - particulate air filter: {} - chemical air filter: {} - low-MERV pleated media: {} - HEPA: {} - electrostatic: {} - gas-phase or ultraviolet air treatments: {} - specific_enum: + Daily: {} + Weekly: {} + Monthly: {} + Quarterly: {} + Annually: {} + other: {} + window_vert_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: - operation: {} - as built: {} - construction: {} - bid: {} - design: {} - photos: {} + bottom: {} + middle: {} + top: {} + low: {} + high: {} slots: abs_air_humidity: annotations: @@ -11212,22 +11212,14 @@ slots: slot_uri: MIXS:0000156 multivalued: false range: QuantityValue - nucleic acid sequence source field: + sequencing field: from_schema: http://w3id.org/mixs/terms abstract: true - has unit: - description: Example "m" - from_schema: http://w3id.org/mixs/ranges - owner: QuantityValue has raw value: from_schema: http://w3id.org/mixs/ranges string_serialization: '{has numeric value} {has unit}' owner: QuantityValue - sequencing field: - from_schema: http://w3id.org/mixs/terms - abstract: true - environment field: - description: field describing environmental aspect of a sample + nucleic acid sequence source field: from_schema: http://w3id.org/mixs/terms abstract: true core field: @@ -11238,8 +11230,16 @@ slots: description: field describing aspect of the investigation/study to which the sample belongs from_schema: http://w3id.org/mixs/terms abstract: true + environment field: + description: field describing environmental aspect of a sample + from_schema: http://w3id.org/mixs/terms + abstract: true has numeric value: from_schema: http://w3id.org/mixs/ranges owner: QuantityValue range: double + has unit: + description: Example "m" + from_schema: http://w3id.org/mixs/ranges + owner: QuantityValue source_file: assets/other_mixs_yaml_files/mixs_template.yaml diff --git a/src/schema/nmdc.yaml b/src/schema/nmdc.yaml index c3e239e309..bd906174d4 100644 --- a/src/schema/nmdc.yaml +++ b/src/schema/nmdc.yaml @@ -58,6 +58,7 @@ prefixes: MetaNetX: http://example.org/metanetx/ NCBITaxon: "http://purl.obolibrary.org/obo/NCBITaxon_" NCIT: "http://purl.obolibrary.org/obo/NCIT_" + OBI: http://purl.obolibrary.org/obo/OBI_ PANTHER.FAMILY: "https://bioregistry.io/panther.family:" # https://bioregistry.io/panther.family:PTHR12345 PFAM: "https://bioregistry.io/pfam:" # https://bioregistry.io/pfam:PF11779 PO: "http://purl.obolibrary.org/obo/PO_" @@ -184,7 +185,6 @@ classes: - read_based_taxonomy_analysis_activity_set - read_qc_analysis_activity_set - study_set - - microbial_biomass_set #- microbial_biomass_set slot_usage: date_created: