Releases: microbiomedata/submission-schema
Releases · microbiomedata/submission-schema
v1.0.2
What's Changed
- schemasheets 1.2 by @turbomam in #84
- Dependencies and TSV cleanup by @turbomam in #86
- dh <-> linkml json conversion by @turbomam in #88
- Use
template
query param to select initial template if given by @pkalita-lbl in #90 - Restore lost slot attribues by @pkalita-lbl in #93
- Shorten underscores in envo enum PVs by @pkalita-lbl in #94
Full Changelog: v1.0.1...v1.0.2
v1.0.1
What's Changed
- project.Makefile with fewer yq commands by @turbomam in #45
- Sample soil data with and without elev values by @turbomam in #46
- jgi and emsl sample data by @turbomam in #52
- more shuttling less defining by @turbomam in #54
- Add DataHarmonizer-based interactive testing interface by @pkalita-lbl in #55
- Update README.md by @turbomam in #56
- linkml2sheets output -> schema_sheets/populated_tsv/slot_usage_minimal.tsv by @turbomam in #58
- Misc minor updates by @pkalita-lbl in #60
- regen by @turbomam in #61
- Commented out deploy in Makefile by @turbomam in #67
- add playground link to about.md by @turbomam in #68
- cp src/docs/*md docs/ before poetry run mkdocs build -d dist by @turbomam in #70
- updated slot class assignments, esp regarding mixins by @turbomam in #69
- Illustrations of LinkML and DH JSON differences by @turbomam in #73
- more direct path to playground by @turbomam in #74
- enum reuse by @turbomam in #76
- Soil mixs env* enums by @turbomam in #79
- Remove dna/rna organisms and collect_site slots by @turbomam in #80
Full Changelog: v1.0.0...v1.0.1
v1.0.0
Initial release of the NMDC submission schema from this repository (previously was built in https://github.com/microbiomedata/sheets_and_friends)
Migration Concerns
Renamed Classes
Previous Name | New Name |
---|---|
air | AirInterface |
biofilm | BiofilmInterface |
built_env | BuiltEnvInterface |
emsl | EmslInterface |
hcr-cores | HcrCoresInterface |
hcr-fluids-swabs | HcrFluidsSwabsInterface |
host-associated | HostAssociatedInterface |
jgi_mg | JgiMgInterface |
jgi_mt | JgiMtInterface |
misc-envs | MiscEnvsInterface |
plant-associated | PlantAssociatedInterface |
sediment | SedimentInterface |
soil | SoilInterface |
wastewater_sludge | WastewaterSludgeInterface |
water | WaterInterface |
dh_mutliview_common_columns | DhMultiviewCommonColumnsMixin |
samp_id_new_terms_mixin | SampIdNewTermsMixin |
soil_mixs_inspired_mixin | SoilMixsInspiredMixin |
dh_interface | DhInterface |
emsl | EmslInterface |
jgi_mg | JgiMgInterface |
jgi_mt | JgiMtInterface |
Renamed Slots
Previous Name | New Name |
---|---|
hcr-cores_data | hcr_cores_data |
hcr-fluids-swabs_data | hcr_fluids_swabs_data |
host-associated_data | host_associated_data |
misc-envs_data | misc_envs_data |
plant-associated_data | plant_associated_data |
Removed classes
- bioscales
Removed slots
- bioscales_data
v1.0.0-rc.3
Test publishing workflow
v1.0.0-rc.2
Test publishing pipeline
v1.0.0-rc.1
Test release pipeline