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run.sh
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run.sh
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#./mini_chrom_nocov_single ../../links/DIPG29T.combined_min3_v2 /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ../../links/DIPG29T.bps ../../links/DIPG29N.bps > debug100
#./mini_chrom_cov_single ../../links/DIPG29T.combined_min3_v2 /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ../../links/DIPG29T.bps ../../links/DIPG29N.bps > debug101
#./mini_chrom_cov_multi ../../links/DIPG29T.combined_min3_v2 /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ../../links/DIPG29T.bps ../../links/DIPG29N.bps > debug102
#./mini_chrom_nocov_multi ../../links/DIPG29T.combined_min3_v2 /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ../../links/DIPG29T.bps ../../links/DIPG29N.bps > debug103
#./mini_chrom_nocov_single ../../links/DIPG29T.combined_min3_v2 /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ../../links/DIPG29T.bps ../../links/DIPG29N.bps > debug104
#./mini_chrom_cov_single ../../links/DIPG29T.combined_min3_v2 /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ../../links/DIPG29T.bps ../../links/DIPG29N.bps > debug105
#./mini_chrom_cov_multi ../../links/DIPG29T.combined_min3_v2 /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ../../links/DIPG29T.bps ../../links/DIPG29N.bps > debug106
#./mini_chrom_nocov_multi ../../links/DIPG29T.combined_min3_v2 /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ../../links/DIPG29T.bps ../../links/DIPG29N.bps > debug107
#./mini_chrom_nocov_single ../../links/DIPG29T.combined_min3_v2 /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ../../links/DIPG29T.bps ../../links/DIPG29N.bps > debug108
#./mini_chrom_cov_single ../../links/DIPG29T.combined_min3_v2 /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ../../links/DIPG29T.bps ../../links/DIPG29N.bps > debug109
#./mini_chrom_cov_multi ../../links/DIPG29T.combined_min3_v2 /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ../../links/DIPG29T.bps ../../links/DIPG29N.bps > debug110
#./mini_chrom_nocov_multi ../../links/DIPG29T.combined_min3_v2 /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ../../links/DIPG29T.bps ../../links/DIPG29N.bps > debug111
#clusters_mq10_s10_v2_formatted
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ./dipg29t_cov_f ./dipg29n_cov_f > debug200
#./mini_chrom_cov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ./dipg29t_cov_f ./dipg29n_cov_f > debug201
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ./dipg29t_cov_f ./dipg29n_cov_f > debug202
#./mini_chrom_cov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov.gz /dev/shm/DIPG29N_replacement.cov.gz ./dipg29t_cov_f ./dipg29n_cov_f > debug203
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug210
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug212
#./mini_chrom_cov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug211
#./mini_chrom_cov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug213
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug230
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug231
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug240
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug241
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug250
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug251
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug261
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug260
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug261
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug260
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug271
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug270
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug291
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug290
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug301
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug300
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug311
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug310
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug321
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug320
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug331
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug330
#./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug341
#./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug340
./mini_chrom_nocov_multi ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug371
./mini_chrom_nocov_single ./clusters_mq10_s10_v2_formatted /dev/shm/DIPG29T.cov /dev/shm/DIPG29N_replacement.cov ./dipg29t_cov_f ./dipg29n_cov_f > debug370