-
Notifications
You must be signed in to change notification settings - Fork 651
707 lines (684 loc) · 30.3 KB
/
ci.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
name: ci
on:
pull_request:
paths:
# NOTE: keep these paths in sync with the paths that trigger the
# fuzzydata Github Actions in .github/workflows/fuzzydata-test.yml
- .github/workflows/**
- .github/actions/**
- '!.github/workflows/push-to-main.yml'
- asv_bench/**
- modin/**
- requirements/**
- scripts/**
- environment-dev.yml
- requirements-dev.txt
- setup.cfg
- setup.py
- versioneer.py
push:
schedule:
- cron: "30 2 * * WED"
- cron: "30 2 * * THU"
concurrency:
# Cancel other jobs in the same branch. We don't care whether CI passes
# on old commits.
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
env:
MODIN_GITHUB_CI: true
jobs:
python-filter:
runs-on: ubuntu-latest
outputs:
python-version: ${{ steps.choose.outputs.python-version }}
steps:
- id: choose
run: |
if [[ "${{ github.event.schedule }}" = "30 2 * * WED" ]]
then
echo "python-version=3.10" >> "$GITHUB_OUTPUT"
elif [[ "${{ github.event.schedule }}" = "30 2 * * THU" ]]
then
echo "python-version=3.11" >> "$GITHUB_OUTPUT"
else
echo "python-version=3.9" >> "$GITHUB_OUTPUT"
fi
lint-mypy:
needs: [python-filter]
name: lint (mypy)
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./.github/actions/python-only
with:
python-version: ${{ needs.python-filter.outputs.python-version }}
- run: pip install -r requirements-dev.txt
- run: mypy --config-file mypy.ini
lint-flake8:
needs: [python-filter]
name: lint (flake8)
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: ./.github/actions/python-only
with:
python-version: ${{ needs.python-filter.outputs.python-version }}
# NOTE: If you are changing the set of packages installed here, make sure that
# the dev requirements match them.
- run: pip install flake8 flake8-print flake8-no-implicit-concat
# NOTE: keep the flake8 command here in sync with the pre-commit hook in
# /contributing/pre-commit
- run: flake8 modin/ asv_bench/benchmarks scripts/doc_checker.py
test-api-and-no-engine:
needs: [python-filter]
name: Test API, headers and no-engine mode
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
- uses: ./.github/actions/mamba-env
with:
environment-file: requirements/requirements-no-engine.yml
python-version: ${{ needs.python-filter.outputs.python-version }}
- run: python -m pytest modin/tests/pandas/test_api.py
- run: python -m pytest modin/tests/test_executions_api.py
- run: python -m pytest modin/tests/test_headers.py
- run: python -m pytest modin/tests/core/test_dispatcher.py::test_add_option
- uses: ./.github/actions/upload-coverage
test-clean-install:
needs: [lint-flake8, python-filter]
strategy:
matrix:
os:
- ubuntu
- windows
runs-on: ${{ matrix.os }}-latest
defaults:
run:
shell: bash -l {0}
name: test-clean-install-${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- uses: ./.github/actions/python-only
with:
python-version: ${{ needs.python-filter.outputs.python-version }}
- run: python -m pip install -e ".[all]"
- name: Ensure Ray and Dask engines start up
run: |
MODIN_ENGINE=dask python -c "import modin.pandas as pd; print(pd.DataFrame([1,2,3]))"
MODIN_ENGINE=ray python -c "import modin.pandas as pd; print(pd.DataFrame([1,2,3]))"
- name: Ensure MPI engine start up
# Install a working MPI implementation beforehand so mpi4py can link to it
run: |
sudo apt install libmpich-dev
python -m pip install -e ".[mpi]"
MODIN_ENGINE=unidist UNIDIST_BACKEND=mpi mpiexec -n 1 python -c "import modin.pandas as pd; print(pd.DataFrame([1,2,3]))"
if: matrix.os == 'ubuntu'
test-internals:
needs: [lint-flake8, python-filter]
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
name: test-internals
steps:
- uses: actions/checkout@v4
- uses: ./.github/actions/mamba-env
with:
environment-file: environment-dev.yml
python-version: ${{ needs.python-filter.outputs.python-version }}
- name: Internals tests
run: python -m pytest modin/tests/core/test_dispatcher.py
- run: python -m pytest modin/tests/config
- run: python -m pytest modin/tests/test_envvar_catcher.py
- run: python -m pytest modin/tests/core/storage_formats/base/test_internals.py
- run: python -m pytest modin/tests/core/storage_formats/pandas/test_internals.py
- run: python -m pytest modin/tests/test_envvar_npartitions.py
- run: python -m pytest modin/tests/test_utils.py
- run: python -m pytest asv_bench/test/test_utils.py
- run: python -m pytest modin/tests/interchange/dataframe_protocol/base
- run: python -m pytest modin/tests/test_dataframe_api_standard.py
- run: python -m pytest modin/tests/test_logging.py
- uses: ./.github/actions/upload-coverage
test-defaults:
needs: [lint-flake8, python-filter]
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
strategy:
matrix:
execution: [BaseOnPython]
env:
MODIN_TEST_DATASET_SIZE: "small"
name: Test ${{ matrix.execution }} execution, Python ${{ needs.python-filter.outputs.python-version }}"
steps:
- uses: actions/checkout@v4
- uses: ./.github/actions/mamba-env
with:
environment-file: environment-dev.yml
python-version: ${{ needs.python-filter.outputs.python-version }}
- name: Install HDF5
run: sudo apt update && sudo apt install -y libhdf5-dev
- name: xgboost tests
run: |
# TODO(https://github.com/modin-project/modin/issues/5194): Uncap xgboost
# when we use collective instead of rabit.
mamba install "xgboost>=1.7.1,<2.0.0" scikit-learn -c conda-forge
python -m pytest modin/tests/experimental/xgboost/test_default.py --execution=${{ matrix.execution }}
- run: python -m pytest -n 2 modin/tests/core/storage_formats/base/test_internals.py --execution=${{ matrix.execution }}
- uses: ./.github/actions/run-core-tests
with:
runner: python -m pytest --execution=${{ matrix.execution }}
- uses: ./.github/actions/upload-coverage
test-asv-benchmarks:
if: github.event_name == 'pull_request'
needs: [lint-flake8]
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
env:
MODIN_ENGINE: ray
MODIN_MEMORY: 1000000000
MODIN_TEST_DATASET_SIZE: small
name: test-asv-benchmarks
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 1
- uses: conda-incubator/setup-miniconda@v3
with:
auto-activate-base: true
activate-environment: ""
miniforge-variant: Mambaforge
miniforge-version: latest
use-mamba: true
- name: Running benchmarks
run: |
git remote add upstream https://github.com/modin-project/modin.git
git fetch upstream
if git diff upstream/main --name-only | grep -q "^asv_bench/"; then
cd asv_bench
mamba env create -f ../environment-dev.yml
conda activate modin
pip install ..
asv machine --yes
# check Modin on Ray
asv run --quick --dry-run --python=same --strict --show-stderr --launch-method=spawn \
-b ^benchmarks -b ^io -b ^scalability | tee benchmarks.log
# check pure pandas
MODIN_ASV_USE_IMPL=pandas asv run --quick --dry-run --python=same --strict --show-stderr --launch-method=spawn \
-b ^benchmarks -b ^io | tee benchmarks.log
else
echo "Benchmarks did not run, no changes detected"
fi
if: always()
- name: Publish benchmarks artifact
uses: actions/upload-artifact@v4
with:
name: Benchmarks log
path: asv_bench/benchmarks.log
if: failure()
execution-filter:
# see if execution backend-specific changes were made
runs-on: ubuntu-latest
outputs:
ray: ${{ steps.filter.outputs.ray }}
dask: ${{ steps.filter.outputs.dask }}
unidist: ${{ steps.filter.outputs.unidist }}
engines: ${{ steps.engines.outputs.engines }}
experimental: ${{ steps.experimental.outputs.experimental }}
steps:
- uses: actions/checkout@v4
- uses: dorny/paths-filter@v3
id: filter
with:
filters: |
shared: &shared
- 'modin/core/execution/dispatching/**'
ray:
- *shared
- 'modin/core/execution/ray/**'
dask:
- *shared
- 'modin/core/execution/dask/**'
unidist:
- *shared
- 'modin/core/execution/unidist/**'
experimental:
- 'modin/experimental/**'
- uses: actions/setup-python@v5
- id: engines
run: |
python -c "import sys, json; print('engines=' + json.dumps(['python'] + (sys.argv[1] == 'true' and ['ray'] or []) + (sys.argv[2] == 'true' and ['dask'] or []) ))" \
"${{ steps.filter.outputs.ray }}" "${{ steps.filter.outputs.dask }}" >> $GITHUB_OUTPUT
test-all-unidist:
needs: [lint-flake8, execution-filter, python-filter]
if: github.event_name == 'push' || needs.execution-filter.outputs.unidist == 'true'
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
strategy:
matrix:
python-version: [ "${{ needs.python-filter.outputs.python-version }}" ]
unidist-backend: ["mpi"]
env:
MODIN_ENGINE: "Unidist"
UNIDIST_BACKEND: ${{matrix.unidist-backend}}
# Only test reading from SQL server and postgres on ubuntu for now.
# Eventually, we should test on Windows, too, but we will have to set up
# the servers differently.
MODIN_TEST_READ_FROM_SQL_SERVER: true
MODIN_TEST_READ_FROM_POSTGRES: true
name: test-ubuntu (engine unidist ${{matrix.unidist-backend}}, python ${{matrix.python-version}})
services:
moto:
image: motoserver/moto:5.0.13
ports:
- 5000:5000
env:
AWS_ACCESS_KEY_ID: foobar_key
AWS_SECRET_ACCESS_KEY: foobar_secret
steps:
- uses: actions/checkout@v4
- uses: ./.github/actions/mamba-env
with:
environment-file: requirements/env_unidist_linux.yml
activate-environment: modin_on_unidist
python-version: ${{matrix.python-version}}
- name: Install HDF5
run: sudo apt update && sudo apt install -y libhdf5-dev
- name: Set up postgres
# Locally, specifying port 2345:5432 works, but 2345:2345 and 5432:5432 do not. This solution is from
# https://stackoverflow.com/questions/36415654/cant-connect-docker-postgresql-9-3
run: |
sudo docker pull postgres
sudo docker run --name some-postgres -e POSTGRES_USER=sa -e POSTGRES_PASSWORD=Strong.Pwd-123 -e POSTGRES_DB=postgres -d -p 2345:5432 postgres
- run: mpiexec -n 1 python -m pytest modin/tests/pandas/internals/test_benchmark_mode.py
- run: mpiexec -n 1 python -m pytest modin/tests/pandas/internals/test_repartition.py
- run: mpiexec -n 1 python -m pytest modin/tests/test_partition_api.py
- uses: ./.github/actions/run-core-tests
with:
runner: mpiexec -n 1 python -m pytest
parallel: ""
- run: mpiexec -n 1 python -m pytest modin/tests/numpy
- run: chmod +x ./.github/workflows/sql_server/set_up_sql_server.sh
- run: ./.github/workflows/sql_server/set_up_sql_server.sh
# need an extra argument "genv" to set environment variables for mpiexec. We need
# these variables to test writing to the mock s3 filesystem.
- uses: nick-fields/retry@v3
# to avoid issues with non-stable `to_csv` tests for unidist on MPI backend.
# for details see: https://github.com/modin-project/modin/pull/6776
with:
timeout_minutes: 15
max_attempts: 3
command: |
conda run --no-capture-output -n modin_on_unidist mpiexec -n 1 -genv AWS_ACCESS_KEY_ID foobar_key \
-genv AWS_SECRET_ACCESS_KEY foobar_secret python -m pytest modin/tests/pandas/test_io.py --verbose
- run: |
mpiexec -n 1 -genv AWS_ACCESS_KEY_ID foobar_key -genv AWS_SECRET_ACCESS_KEY foobar_secret \
python -m pytest modin/tests/experimental/test_io_exp.py
- run: mpiexec -n 1 python -m pytest modin/tests/interchange/dataframe_protocol/test_general.py
- run: mpiexec -n 1 python -m pytest modin/tests/interchange/dataframe_protocol/pandas/test_protocol.py
- run: |
python -m pip install lazy_import
mpiexec -n 1 python -m pytest modin/tests/pandas/integrations/
- uses: ./.github/actions/upload-coverage
test-all:
needs: [lint-flake8, execution-filter, python-filter]
strategy:
matrix:
os:
- ubuntu
- windows
python-version: [ "${{ needs.python-filter.outputs.python-version }}" ]
engine: ${{ fromJSON( github.event_name == 'push' && '["python", "ray", "dask"]' || needs.execution-filter.outputs.engines ) }}
test_task:
- group_1
- group_2
- group_3
- group_4
exclude: # python engine only have one task group that contains all the tests
- engine: "python"
test_task: "group_2"
- engine: "python"
test_task: "group_3"
- engine: "python"
test_task: "group_4"
runs-on: ${{ matrix.os }}-latest
defaults:
run:
shell: bash -l {0}
env:
MODIN_ENGINE: ${{matrix.engine}}
# Only test reading from SQL server and postgres on ubuntu for now.
# Eventually, we should test on Windows, too, but we will have to set up
# the servers differently.
MODIN_TEST_READ_FROM_SQL_SERVER: ${{ matrix.os == 'ubuntu' }}
MODIN_TEST_READ_FROM_POSTGRES: ${{ matrix.os == 'ubuntu' }}
name: test-${{ matrix.os }} (engine ${{matrix.engine}}, python ${{matrix.python-version}}, ${{matrix.test_task}})
services:
# Using workaround https://github.com/actions/runner/issues/822#issuecomment-1524826092
moto:
# we only need moto service on Ubuntu and for group_4 task or python engine
image: ${{ (matrix.os == 'ubuntu' && (matrix.engine == 'python' || matrix.test_task == 'group_4')) && 'motoserver/moto:5.0.13' || '' }}
ports:
- 5000:5000
env:
AWS_ACCESS_KEY_ID: foobar_key
AWS_SECRET_ACCESS_KEY: foobar_secret
steps:
- name: Limit ray memory
run: echo "MODIN_MEMORY=1000000000" >> $GITHUB_ENV
if: matrix.os == 'ubuntu' && matrix.engine == 'ray'
- name: Tell Modin to use existing ray cluster
run: echo "MODIN_RAY_CLUSTER=True" >> $GITHUB_ENV
if: matrix.os == 'windows' && matrix.engine == 'ray'
- uses: actions/checkout@v4
- uses: ./.github/actions/mamba-env
with:
environment-file: environment-dev.yml
python-version: ${{matrix.python-version}}
- name: Start local ray cluster
# Try a few times to start ray to work around
# https://github.com/modin-project/modin/issues/4562
uses: nick-fields/retry@v3
with:
timeout_minutes: 5
max_attempts: 5
command: ray start --head --port=6379 --object-store-memory=1000000000
if: matrix.os == 'windows' && matrix.engine == 'ray'
- name: Install HDF5
run: sudo apt update && sudo apt install -y libhdf5-dev
if: matrix.os == 'ubuntu'
- name: Set up postgres
# Locally, specifying port 2345:5432 works, but 2345:2345 and 5432:5432 do not. This solution is from
# https://stackoverflow.com/questions/36415654/cant-connect-docker-postgresql-9-3
run: |
sudo docker pull postgres
sudo docker run --name some-postgres -e POSTGRES_USER=sa -e POSTGRES_PASSWORD=Strong.Pwd-123 -e POSTGRES_DB=postgres -d -p 2345:5432 postgres
if: matrix.os == 'ubuntu'
- run: python -m pytest modin/tests/pandas/internals/test_benchmark_mode.py
if: matrix.engine == 'python' || matrix.test_task == 'group_1'
- run: python -m pytest modin/tests/pandas/internals/test_repartition.py
if: matrix.engine == 'python' || matrix.test_task == 'group_1'
- run: python -m pytest modin/tests/test_partition_api.py
if: matrix.engine != 'python' && matrix.test_task == 'group_1'
- name: xgboost tests
run: |
# TODO(https://github.com/modin-project/modin/issues/5194): Uncap xgboost
# when we use collective instead of rabit.
mamba install "xgboost>=1.7.1,<2.0.0" scikit-learn -c conda-forge
python -m pytest -n 2 \
modin/tests/experimental/xgboost/test_default.py \
modin/tests/experimental/xgboost/test_xgboost.py \
modin/tests/experimental/xgboost/test_dmatrix.py
if: matrix.os != 'windows' && matrix.test_task == 'group_1'
- run: python -m pytest -n 2 modin/tests/experimental/test_pipeline.py
if: matrix.engine == 'python' || matrix.test_task == 'group_1'
- uses: ./.github/actions/run-core-tests/group_1
if: matrix.engine == 'python' || matrix.test_task == 'group_1'
- uses: ./.github/actions/run-core-tests/group_2
if: matrix.engine == 'python' || matrix.test_task == 'group_2'
- uses: ./.github/actions/run-core-tests/group_3
if: matrix.engine == 'python' || matrix.test_task == 'group_3'
- uses: ./.github/actions/run-core-tests/group_4
if: matrix.engine == 'python' || matrix.test_task == 'group_4'
- run: python -m pytest -n 2 modin/tests/numpy
if: matrix.engine == 'python' || matrix.test_task == 'group_4'
- run: chmod +x ./.github/workflows/sql_server/set_up_sql_server.sh
if: matrix.os == 'ubuntu' && (matrix.engine == 'python' || matrix.test_task == 'group_4')
- run: ./.github/workflows/sql_server/set_up_sql_server.sh
if: matrix.os == 'ubuntu' && (matrix.engine == 'python' || matrix.test_task == 'group_4')
# Do not add parallelism (`-n` argument) here - it will cause mock S3 service to fail.
- run: python -m pytest modin/tests/pandas/test_io.py --verbose
timeout-minutes: 60
if: matrix.engine == 'python' || matrix.test_task == 'group_4'
- run: python -m pytest modin/tests/experimental/test_io_exp.py
if: matrix.engine == 'python' || matrix.test_task == 'group_4'
- run: python -m pytest modin/tests/interchange/dataframe_protocol/test_general.py
if: matrix.engine == 'python' || matrix.test_task == 'group_4'
- run: python -m pytest modin/tests/interchange/dataframe_protocol/pandas/test_protocol.py
if: matrix.engine == 'python' || matrix.test_task == 'group_4'
- run: python -m pytest modin/tests/polars/test_dataframe.py
- run: |
python -m pip install lazy_import
python -m pytest modin/tests/pandas/integrations/
if: matrix.engine == 'python' || matrix.test_task == 'group_4'
- uses: ./.github/actions/upload-coverage
- name: Stop local ray cluster
run: ray stop
if: matrix.os == 'windows' && matrix.engine == 'ray'
- name: Rename the dirs with conda packages so it won't be deleted, it's too slow on Windows.
run: |
mkdir -p "${CONDA_PKGS_DIR}_do_not_cache" && \
find "${CONDA_PKGS_DIR}" -mindepth 1 -maxdepth 1 -type d -exec mv {} "${CONDA_PKGS_DIR}_do_not_cache" \;
if: matrix.os == 'windows'
test-sanity:
needs: [lint-flake8, execution-filter, python-filter]
if: github.event_name == 'pull_request'
strategy:
matrix:
os:
- ubuntu
- windows
python-version: [ "${{ needs.python-filter.outputs.python-version }}" ]
execution:
- name: ray
shell-ex: "python -m pytest"
if: needs.execution-filter.ray != 'true'
- name: dask
shell-ex: "python -m pytest"
if: needs.execution-filter.dask != 'true'
- name: unidist
shell-ex: "mpiexec -n 1 -genv AWS_ACCESS_KEY_ID foobar_key -genv AWS_SECRET_ACCESS_KEY foobar_secret python -m pytest"
if: needs.execution-filter.unidist != 'true'
runs-on: ${{ matrix.os }}-latest
defaults:
run:
shell: bash -l {0}
env:
MODIN_ENGINE: ${{ matrix.execution.name }}
UNIDIST_BACKEND: "mpi"
PARALLEL: ${{ matrix.execution.name != 'unidist' && matrix.os != 'windows' && '-n 2' || '' }}
name: test-${{ matrix.os }}-sanity (engine ${{ matrix.execution.name }}, python ${{matrix.python-version}})
services:
moto:
image: ${{ matrix.os != 'windows' && 'motoserver/moto:5.0.13' || '' }}
ports:
- 5000:5000
env:
AWS_ACCESS_KEY_ID: foobar_key
AWS_SECRET_ACCESS_KEY: foobar_secret
steps:
- uses: actions/checkout@v4
- uses: ./.github/actions/mamba-env
with:
environment-file: ${{ matrix.os == 'ubuntu' && matrix.execution.name == 'unidist' && 'requirements/env_unidist_linux.yml' || matrix.os == 'windows' && matrix.execution.name == 'unidist' && 'requirements/env_unidist_win.yml' || 'environment-dev.yml' }}
activate-environment: ${{ matrix.execution.name == 'unidist' && 'modin_on_unidist' || 'modin' }}
python-version: ${{matrix.python-version}}
- name: Install HDF5
run: sudo apt update && sudo apt install -y libhdf5-dev
if: matrix.os != 'windows'
- name: Limit ray memory
run: echo "MODIN_MEMORY=1000000000" >> $GITHUB_ENV
if: matrix.os != 'windows' && matrix.execution.name == 'ray'
- name: Tell Modin to use existing ray cluster
run: echo "MODIN_RAY_CLUSTER=True" >> $GITHUB_ENV
if: matrix.os == 'windows' && matrix.execution.name == 'ray'
- name: Start local ray cluster
# Try a few times to start ray to work around
# https://github.com/modin-project/modin/issues/4562
uses: nick-fields/retry@v3
with:
timeout_minutes: 5
max_attempts: 5
command: ray start --head --port=6379 --object-store-memory=1000000000
if: matrix.os == 'windows' && matrix.execution.name == 'ray'
- run: MODIN_BENCHMARK_MODE=True ${{ matrix.execution.shell-ex }} modin/tests/pandas/internals/test_benchmark_mode.py
- run: ${{ matrix.execution.shell-ex }} $PARALLEL modin/tests/pandas/internals/test_repartition.py
- run: ${{ matrix.execution.shell-ex }} $PARALLEL modin/tests/test_partition_api.py
- run: ${{ matrix.execution.shell-ex }} modin/tests/pandas/extensions
- name: xgboost tests
run: |
# TODO(https://github.com/modin-project/modin/issues/5194): Uncap xgboost
# when we use collective instead of rabit.
mamba install "xgboost>=1.7.1,<2.0.0" scikit-learn -c conda-forge
${{ matrix.execution.shell-ex }} $PARALLEL \
modin/tests/experimental/xgboost/test_default.py \
modin/tests/experimental/xgboost/test_xgboost.py \
modin/tests/experimental/xgboost/test_dmatrix.py
if: matrix.os != 'windows' && needs.execution-filter.experimental == 'true'
- run: ${{ matrix.execution.shell-ex }} $PARALLEL modin/tests/experimental/test_pipeline.py
if: matrix.os != 'windows' && matrix.execution.name != 'unidist' && needs.execution-filter.experimental == 'true'
- name: "test DF: binary, default, iter"
run: |
${{ matrix.execution.shell-ex }} $PARALLEL \
modin/tests/pandas/dataframe/test_binary.py \
modin/tests/pandas/dataframe/test_default.py \
modin/tests/pandas/dataframe/test_iter.py
if: matrix.os != 'windows'
- name: "test DF: reduce, udf, window, pickle"
run: |
${{ matrix.execution.shell-ex }} $PARALLEL \
modin/tests/pandas/dataframe/test_reduce.py \
modin/tests/pandas/dataframe/test_udf.py \
modin/tests/pandas/dataframe/test_window.py \
modin/tests/pandas/dataframe/test_pickle.py
if: matrix.os != 'windows'
- run: ${{ matrix.execution.shell-ex }} modin/tests/pandas/test_series.py
if: matrix.execution.name == 'ray'
- run: ${{ matrix.execution.shell-ex }} -m "not exclude_in_sanity" modin/tests/pandas/test_series.py
if: matrix.execution.name != 'ray'
- run: ${{ matrix.execution.shell-ex }} modin/tests/pandas/dataframe/test_map_metadata.py
if: matrix.execution.name == 'ray'
- run: ${{ matrix.execution.shell-ex }} -m "not exclude_in_sanity" modin/tests/pandas/dataframe/test_map_metadata.py
if: matrix.execution.name != 'ray'
- name: "test rolling, expanding, reshape, general, concat"
run: |
${{ matrix.execution.shell-ex }} $PARALLEL \
modin/tests/pandas/test_rolling.py \
modin/tests/pandas/test_expanding.py \
modin/tests/pandas/test_reshape.py \
modin/tests/pandas/test_general.py \
modin/tests/pandas/test_concat.py
if: matrix.os != 'windows'
- run: ${{ matrix.execution.shell-ex }} $PARALLEL modin/tests/numpy
- run: ${{ matrix.execution.shell-ex }} -m "not exclude_in_sanity" modin/tests/pandas/test_io.py --verbose
if: matrix.execution.name != 'unidist'
- uses: nick-fields/retry@v3
# to avoid issues with non-stable `to_csv` tests for unidist on MPI backend.
# for details see: https://github.com/modin-project/modin/pull/6776
with:
timeout_minutes: 15
max_attempts: 3
command: conda run --no-capture-output -n modin_on_unidist ${{ matrix.execution.shell-ex }} -m "not exclude_in_sanity" modin/tests/pandas/test_io.py --verbose
if: matrix.execution.name == 'unidist'
- run: ${{ matrix.execution.shell-ex }} modin/tests/experimental/test_io_exp.py
- run: ${{ matrix.execution.shell-ex }} $PARALLEL modin/tests/interchange/dataframe_protocol/test_general.py
- run: ${{ matrix.execution.shell-ex }} $PARALLEL modin/tests/interchange/dataframe_protocol/pandas/test_protocol.py
- name: Stop local ray cluster
run: ray stop
if: matrix.os == 'windows' && matrix.execution.name == 'ray'
- name: Rename the dirs with conda packages so it won't be deleted, it's too slow on Windows.
run: |
mkdir -p "${CONDA_PKGS_DIR}_do_not_cache" && \
find "${CONDA_PKGS_DIR}" -mindepth 1 -maxdepth 1 -type d -exec mv {} "${CONDA_PKGS_DIR}_do_not_cache" \;
if: matrix.os == 'windows'
- uses: ./.github/actions/upload-coverage
test-experimental:
needs: [lint-flake8, python-filter]
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
env:
MODIN_ENGINE: "python"
MODIN_EXPERIMENTAL: "True"
name: test experimental
services:
moto:
image: motoserver/moto:5.0.13
ports:
- 5000:5000
env:
AWS_ACCESS_KEY_ID: foobar_key
AWS_SECRET_ACCESS_KEY: foobar_secret
steps:
- uses: actions/checkout@v4
- uses: ./.github/actions/mamba-env
with:
environment-file: environment-dev.yml
python-version: ${{ needs.python-filter.outputs.python-version }}
- name: Install HDF5
run: sudo apt update && sudo apt install -y libhdf5-dev
- run: python -m pytest -n 2 modin/tests/pandas/dataframe/test_map_metadata.py
- run: python -m pytest -n 2 modin/tests/pandas/test_series.py
# Do not add parallelism (`-n` argument) here - it will cause mock S3 service to fail.
- run: python -m pytest modin/tests/pandas/test_io.py --verbose
- uses: ./.github/actions/upload-coverage
test-spreadsheet:
needs: [lint-flake8, python-filter]
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
strategy:
matrix:
python-version: [ "${{ needs.python-filter.outputs.python-version }}" ]
engine: ["ray", "dask"]
env:
MODIN_EXPERIMENTAL: "True"
MODIN_ENGINE: ${{matrix.engine}}
name: test-spreadsheet (engine ${{matrix.engine}}, python ${{matrix.python-version}})
steps:
- uses: actions/checkout@v4
- uses: ./.github/actions/mamba-env
with:
environment-file: environment-dev.yml
python-version: ${{matrix.python-version}}
- run: python -m pytest modin/tests/experimental/spreadsheet/test_general.py
merge-coverage-artifacts:
needs: [test-internals, test-api-and-no-engine, test-defaults, test-all-unidist, test-all, test-experimental, test-sanity]
if: always() # we need to run it regardless of some job being skipped, like in PR
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
steps:
- name: Merge Artifacts
uses: actions/upload-artifact/merge@v4
with:
name: coverage-data
pattern: coverage-data-*
delete-merged: true
upload-coverage:
needs: [merge-coverage-artifacts, python-filter]
if: always() # we need to run it regardless of some job being skipped, like in PR
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
- uses: ./.github/actions/python-only
with:
python-version: ${{ needs.python-filter.outputs.python-version }}
- name: Download coverage data
uses: actions/download-artifact@v4
with:
name: coverage-data
- run: pip install coverage
- name: Combine coverage
run: python -m coverage combine
- name: Generate coverage report in xml format
run: python -m coverage xml
- uses: codecov/codecov-action@v4
with:
fail_ci_if_error: ${{ github.event_name == 'push' }} # do not care about uploads in PR
token: ${{ secrets.CODECOV_TOKEN }} # this token is available at https://app.codecov.io/account/github/modin-project/