diff --git a/bam_collapsing b/bam_collapsing
index 268d002..7e4c88b 160000
--- a/bam_collapsing
+++ b/bam_collapsing
@@ -1 +1 @@
-Subproject commit 268d002fc56e54a01dae739f5dea3a5aa2138d3c
+Subproject commit 7e4c88b1fc1c121f3dcee466512211e825707488
diff --git a/command_line_tools b/command_line_tools
index dd67752..af2076c 160000
--- a/command_line_tools
+++ b/command_line_tools
@@ -1 +1 @@
-Subproject commit dd67752a6a7e4d766a664ad2e0b6042d36a67bed
+Subproject commit af2076cdc112561c9ba52ea0a2e551abfae6753b
diff --git a/subworkflows b/subworkflows
index 5f14259..b26a383 160000
--- a/subworkflows
+++ b/subworkflows
@@ -1 +1 @@
-Subproject commit 5f142592d05e8194ec326c27dff8733c1e89cb76
+Subproject commit b26a3837961c38cf5b4711de317d0a76fc6c8532
diff --git a/uncollapsed_bam_generation b/uncollapsed_bam_generation
index b60e4a0..d06fe8e 160000
--- a/uncollapsed_bam_generation
+++ b/uncollapsed_bam_generation
@@ -1 +1 @@
-Subproject commit b60e4a065610eda06d10a816f929cbb9c76bb19b
+Subproject commit d06fe8e23ad9809561c6732b54495b9ae92419f3