diff --git a/bam_collapsing b/bam_collapsing
index ffbeab4..dce4100 160000
--- a/bam_collapsing
+++ b/bam_collapsing
@@ -1 +1 @@
-Subproject commit ffbeab44b9cff49864dcf63652e771ab8dd07523
+Subproject commit dce4100f71dfbac3653e24624c551292785cada2
diff --git a/command_line_tools b/command_line_tools
index 9e888b4..abda9e0 160000
--- a/command_line_tools
+++ b/command_line_tools
@@ -1 +1 @@
-Subproject commit 9e888b44f4d203dc797c0a914099ce906cbfe261
+Subproject commit abda9e0533f02cfe6febafdaf5cd5304f5713040
diff --git a/subworkflows b/subworkflows
index 1fd4bf7..d86819b 160000
--- a/subworkflows
+++ b/subworkflows
@@ -1 +1 @@
-Subproject commit 1fd4bf7f0619088c70a05a8eaaea3594bc66cd92
+Subproject commit d86819b01314d289d6985042c20d346a0ab482e4
diff --git a/uncollapsed_bam_generation b/uncollapsed_bam_generation
index e441c3f..02d25c1 160000
--- a/uncollapsed_bam_generation
+++ b/uncollapsed_bam_generation
@@ -1 +1 @@
-Subproject commit e441c3fc6b6720702193ab4d9d5e9aeeabdc6819
+Subproject commit 02d25c172f812a9ef8c4550c2bc34105acdc3af0