From 2a3904407adf39e3ee458f350d016879d0906619 Mon Sep 17 00:00:00 2001 From: luc Date: Mon, 20 May 2024 10:28:25 -0400 Subject: [PATCH] Update cellranger_multi.py --- scripts/cellranger_multi.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/scripts/cellranger_multi.py b/scripts/cellranger_multi.py index dae2b40..dd79db2 100644 --- a/scripts/cellranger_multi.py +++ b/scripts/cellranger_multi.py @@ -418,12 +418,12 @@ def gather_sample_set_info(sample_name): for key, value in sample.items(): if value[0].startswith(ilab_request) and key.endswith(sample_number): value[2] = value[2].split(",") - if "10X_Genomics_FeatureBarcoding" in value[2][0]: + if "SC_Chromium-FB-5" in value[2][0]: if "Feature Barcoding" in fb_type: sample_set["fb"] = "_IGO_".join([value[1], key]) if "Cell Hashing" in fb_type: sample_set["ch"] = "_IGO_".join([value[1], key]) - if "10X_Genomics_VDJ" in value[2][0]: + if "SC_Chromium-BCR" in value[2][0] or "SC_Chromium-TCR" in value[2][0]: sample_set["vdj"] = "_IGO_".join([value[1], key]) # TODO add vdj type to the whole pipeline return sample_set