pyslowfast.build

#A singularity script to run the repo
#https://github.com/natbutter/artemis-pytorch.git
#Developed in the docker cotainer
#If you use this script you must acknowledge SIH 
#"The authors acknowledge the technical assistance provided by the Sydney Informatics Hub, a Core Research Facility of the University of Sydney."

#Build with:
#sudo singularity build --writable pyslowfast.img pyslowfast.build

#Run with
#Mount the current directory in the container at /project, change directories and execute your script
#singularity exec --nv -B $PBS_O_WORKDIR:/project $PBS_O_WORKDIR/pyslowfast.img cd /project && python testGPU.py 


###################

Bootstrap: docker
From: nbutter/pyfastslow 

#Directories are mounted on Artemis and NCI, so we add them here to bind in at runtime.
#Change these as required by your HPC cluster
%setup
#mkdir ${SINGULARITY_ROOTFS}/workspace

%files
%labels
    Maintainer nathaniel.butterworth 
    at the Sydney Informatics Hub
    Version v1.0
    Build with:
    sudo singularity build --writable pyslowfast.img pyslowfast.build 
    singularity exec --nv pyslowfast.img python

%post

%environment
export PATH=/root/miniconda3/bin:$PATH

%runscript
exec /bin/bash