From 890f44cca27169b91db63844501cae4acb133f86 Mon Sep 17 00:00:00 2001
From: Daniel-VM <danielvmillares@gmail.com>
Date: Thu, 24 Oct 2024 13:59:20 +0200
Subject: [PATCH] fix bakta running only for one sample

---
 subworkflows/local/bakta_dbdownload_run.nf | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)

diff --git a/subworkflows/local/bakta_dbdownload_run.nf b/subworkflows/local/bakta_dbdownload_run.nf
index 675adcbe..6822ba67 100644
--- a/subworkflows/local/bakta_dbdownload_run.nf
+++ b/subworkflows/local/bakta_dbdownload_run.nf
@@ -43,9 +43,14 @@ workflow BAKTA_DBDOWNLOAD_RUN {
     //
     // MODULE: BAKTA, gene annotation
     //
+    // Setup input channel for Bakta process
+    ch_fasta
+        .combine(ch_baktadb)
+        .set{ ch_to_bakta }
+    ch_to_bakta.view()
     BAKTA_BAKTA (
-        ch_fasta,
-        ch_baktadb,
+        ch_to_bakta.map{ meta, fasta, bakta_db -> [meta, fasta] },
+        ch_to_bakta.map{ meta, fasta, bakta_db -> bakta_db },
         [],
         []
     )