crg.config

profiles {
    crg {
        params {
            config_profile_contact     = 'Jose Espinosa-Carrasco (@joseespinosa)'
            config_profile_description = 'nf-core/proteinfold CRG profile provided by nf-core/configs'
        }
        executor.name = 'crg'
        process {
            queue = 'short-centos79,long-centos79'
            withName: ARIA2 {
                time = '12h'
            }
            withName: 'RUN_ALPHAFOLD2|RUN_ALPHAFOLD2_PRED|RUN_ALPHAFOLD2_MSA' {
                cpus           = 1
                memory         = "30 GB"
                queue          = params.use_gpu ? 'gpu' : 'long-centos79'
                clusterOptions = { (task.queue == 'gpu' ? '-l gpu=1,virtual_free=30G' : '') }
            }
            withName: COLABFOLD_BATCH {
                cpus           = 1
                memory         = "30 GB"
                queue          = params.use_gpu ? 'gpu' : 'long-centos79'
                clusterOptions = { (task.queue == 'gpu' ? '-l gpu=1,virtual_free=30G' : '') }
            }
            withName: MMSEQS_COLABFOLDSEARCH {
                queue  = 'mem_512'
                memory = "100 GB"
                cpus   = 8
                time   = '12h'
            }
            withName: RUN_ESMFOLD {
                cpus           = 1
                memory         = "30 GB"
                queue          = params.use_gpu ? 'gpu' : 'long-centos79'
                clusterOptions = { (task.queue == 'gpu' ? '-l gpu=1,virtual_free=30G' : '') }
            }
        }
    }
}