From c72576c48386c9c30a7529f5c3229af87cb2a1b6 Mon Sep 17 00:00:00 2001 From: khersameesh24 Date: Wed, 30 Oct 2024 23:25:35 +0100 Subject: [PATCH] minor typo fix for meta id --- .../import-segmentation/tests/main.nf.test | 10 +++++----- .../import-segmentation/tests/main.nf.test.snap | 6 +++--- modules/nf-core/xeniumranger/rename/tests/main.nf.test | 4 ++-- .../xeniumranger/rename/tests/main.nf.test.snap | 10 +++++----- .../nf-core/xeniumranger/resegment/tests/main.nf.test | 4 ++-- .../xeniumranger/resegment/tests/main.nf.test.snap | 6 +++--- 6 files changed, 20 insertions(+), 20 deletions(-) diff --git a/modules/nf-core/xeniumranger/import-segmentation/tests/main.nf.test b/modules/nf-core/xeniumranger/import-segmentation/tests/main.nf.test index 705a66c1cad..54d3ba00209 100644 --- a/modules/nf-core/xeniumranger/import-segmentation/tests/main.nf.test +++ b/modules/nf-core/xeniumranger/import-segmentation/tests/main.nf.test @@ -27,7 +27,7 @@ nextflow_process { process { """ input[0] = Channel.of([ - [id: "test_xeniumranger_relabel"], + [id: "test_xeniumranger_import-segmentation"], ]).combine(UNZIP.out.unzipped_archive.map { it[1] }) input[1] = 0 input[2] = [] @@ -94,7 +94,7 @@ nextflow_process { process { """ input[0] = Channel.of([ - [id: "test_xeniumranger_relabel"], + [id: "test_xeniumranger_import-segmentation"], ]).combine(UNZIP.out.unzipped_archive.map { it[1] }) input[1] = 0 input[2] = [] @@ -160,7 +160,7 @@ nextflow_process { process { """ input[0] = Channel.of([ - [id: "test_xeniumranger_relabel"], + [id: "test_xeniumranger_import-segmentation"], ]).combine(UNZIP.out.unzipped_archive.map { it[1] }) input[1] = 0 input[2] = UNZIP.out.unzipped_archive.map { it[1] } + "/segmentations/imagealignment.csv" @@ -226,7 +226,7 @@ nextflow_process { process { """ input[0] = Channel.of([ - [id: "test_xeniumranger_relabel"], + [id: "test_xeniumranger_import-segmentation"], ]).combine(UNZIP.out.unzipped_archive.map { it[1] }) input[1] = 0 input[2] = [] @@ -293,7 +293,7 @@ nextflow_process { process { """ input[0] = Channel.of([ - [id: "test_xeniumranger_relabel"], + [id: "test_xeniumranger_import-segmentation"], ]).combine(UNZIP.out.unzipped_archive.map { it[1] }) input[1] = 0 input[2] = [] diff --git a/modules/nf-core/xeniumranger/import-segmentation/tests/main.nf.test.snap b/modules/nf-core/xeniumranger/import-segmentation/tests/main.nf.test.snap index ee026b3aa7c..1c312ae0f3b 100644 --- a/modules/nf-core/xeniumranger/import-segmentation/tests/main.nf.test.snap +++ b/modules/nf-core/xeniumranger/import-segmentation/tests/main.nf.test.snap @@ -74,7 +74,7 @@ "0": [ [ { - "id": "test_xeniumranger_relabel" + "id": "test_xeniumranger_import-segmentation" }, "fake_file.txt:md5,d41d8cd98f00b204e9800998ecf8427e" ] @@ -85,7 +85,7 @@ "outs": [ [ { - "id": "test_xeniumranger_relabel" + "id": "test_xeniumranger_import-segmentation" }, "fake_file.txt:md5,d41d8cd98f00b204e9800998ecf8427e" ] @@ -99,7 +99,7 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-10-30T12:55:58.357065" + "timestamp": "2024-10-30T22:49:39.204133" }, "xeniumranger import-segmentation nuclei tif": { "content": [ diff --git a/modules/nf-core/xeniumranger/rename/tests/main.nf.test b/modules/nf-core/xeniumranger/rename/tests/main.nf.test index deeda23aa47..3819a310d19 100644 --- a/modules/nf-core/xeniumranger/rename/tests/main.nf.test +++ b/modules/nf-core/xeniumranger/rename/tests/main.nf.test @@ -27,7 +27,7 @@ nextflow_process { process { """ input[0] = Channel.of([ - [id: "test_xeniumranger_relabel"], + [id: "test_xeniumranger_rename"], ]).combine(UNZIP.out.unzipped_archive.map { it[1] }) input[1] = "test_region" input[2] = "test_cassette" @@ -60,7 +60,7 @@ nextflow_process { process { """ input[0] = Channel.of([ - [id: "test_xeniumranger_relabel"], + [id: "test_xeniumranger_rename"], ]).combine(UNZIP.out.unzipped_archive.map { it[1] }) input[1] = "test_region" input[2] = "test_cassette" diff --git a/modules/nf-core/xeniumranger/rename/tests/main.nf.test.snap b/modules/nf-core/xeniumranger/rename/tests/main.nf.test.snap index db064c04bb0..ea57ab7e0fd 100644 --- a/modules/nf-core/xeniumranger/rename/tests/main.nf.test.snap +++ b/modules/nf-core/xeniumranger/rename/tests/main.nf.test.snap @@ -5,7 +5,7 @@ "0": [ [ { - "id": "test_xeniumranger_relabel" + "id": "test_xeniumranger_rename" }, "fake_file.txt:md5,d41d8cd98f00b204e9800998ecf8427e" ] @@ -16,7 +16,7 @@ "outs": [ [ { - "id": "test_xeniumranger_relabel" + "id": "test_xeniumranger_rename" }, "fake_file.txt:md5,d41d8cd98f00b204e9800998ecf8427e" ] @@ -30,7 +30,7 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-10-30T12:00:02.547585" + "timestamp": "2024-10-30T23:10:43.918492" }, "xeniumranger rename": { "content": [ @@ -47,7 +47,7 @@ "cells.parquet:md5,e1450c7eca3d7ce0d4911c95042b1303", "cells.zarr.zip:md5,556e47d5b14150239b10b2f801defa2b", "gene_panel.json:md5,8890dd5fd90706e751554ac3fdfdedde", - "metrics_summary.csv:md5,ce5c0c32c2a6994dd29e1595b439125b", + "metrics_summary.csv:md5,54ad3944eb3ba6a4d7bda01bc2a6bb1c", "morphology.ome.tif:md5,6b65fff28a38a001b8f25061737fbf9b", "morphology_focus_0000.ome.tif:md5,90e796ad634d14e62cf2ebcadf2eaf98", "nucleus_boundaries.csv.gz:md5,e417b6e293298870956d42c7106cbd0c", @@ -60,6 +60,6 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-10-30T11:59:45.587263" + "timestamp": "2024-10-30T23:10:34.499597" } } \ No newline at end of file diff --git a/modules/nf-core/xeniumranger/resegment/tests/main.nf.test b/modules/nf-core/xeniumranger/resegment/tests/main.nf.test index fb2640e99b0..861c2414565 100644 --- a/modules/nf-core/xeniumranger/resegment/tests/main.nf.test +++ b/modules/nf-core/xeniumranger/resegment/tests/main.nf.test @@ -27,7 +27,7 @@ nextflow_process { process { """ input[0] = Channel.of([ - [id: "test_xeniumranger_relabel"], + [id: "test_xeniumranger_resegment"], ]).combine(UNZIP.out.unzipped_archive.map { it[1] }) input[1] = [] input[2] = [] @@ -58,7 +58,7 @@ nextflow_process { process { """ input[0] = Channel.of([ - [id: "test_xeniumranger_relabel"], + [id: "test_xeniumranger_resegment"], ]).combine(UNZIP.out.unzipped_archive.map { it[1] }) input[1] = [] input[2] = [] diff --git a/modules/nf-core/xeniumranger/resegment/tests/main.nf.test.snap b/modules/nf-core/xeniumranger/resegment/tests/main.nf.test.snap index 2777f943f2f..16f94c14ebf 100644 --- a/modules/nf-core/xeniumranger/resegment/tests/main.nf.test.snap +++ b/modules/nf-core/xeniumranger/resegment/tests/main.nf.test.snap @@ -5,7 +5,7 @@ "0": [ [ { - "id": "test_xeniumranger_relabel" + "id": "test_xeniumranger_resegment" }, "fake_file.txt:md5,d41d8cd98f00b204e9800998ecf8427e" ] @@ -16,7 +16,7 @@ "outs": [ [ { - "id": "test_xeniumranger_relabel" + "id": "test_xeniumranger_resegment" }, "fake_file.txt:md5,d41d8cd98f00b204e9800998ecf8427e" ] @@ -30,6 +30,6 @@ "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-10-30T12:23:55.768779" + "timestamp": "2024-10-30T23:22:35.438329" } } \ No newline at end of file