From 80a4e7979e1978bb89c4585525378dfc683aef7e Mon Sep 17 00:00:00 2001
From: MartinPippel <martin.pippel@nbis.se>
Date: Fri, 1 Nov 2024 10:50:56 +0100
Subject: [PATCH] fix read variable in for loop

---
 modules/nf-core/meryl/count/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/nf-core/meryl/count/main.nf b/modules/nf-core/meryl/count/main.nf
index c1540cc874b..a5b84e87cb1 100644
--- a/modules/nf-core/meryl/count/main.nf
+++ b/modules/nf-core/meryl/count/main.nf
@@ -28,7 +28,7 @@ process MERYL_COUNT {
             threads=$task.cpus \\
             memory=${task.memory.toGiga()} \\
             $args \\
-            $reads \\
+            \$READ \\
             output read.\${READ%.f*}.meryl
     done