From 6b5e1cd2b3b70fbd7e6d68de76b66c98419f2de2 Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Mon, 14 Oct 2024 09:15:34 -0500 Subject: [PATCH] Revert "test: Remove multiqc export with test profile" This reverts commit 39cd9b6921c27ef9a0f0131704ef8d2b586cc526. --- assets/multiqc_config.yml | 3 +-- conf/modules.config | 3 +-- conf/test.config | 5 ----- tests/nextflow.config | 5 ----- 4 files changed, 2 insertions(+), 14 deletions(-) diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index f27a64ca..525f129a 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -30,7 +30,6 @@ sp: fn: "*.tdplot_mqc.jpg" ignore_images: false -# BUG https://github.com/MultiQC/MultiQC/pull/2888 -export_plots: false +export_plots: true disable_version_detection: true diff --git a/conf/modules.config b/conf/modules.config index b2d5f406..e254bb62 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -28,8 +28,7 @@ process { } withName: 'MULTIQC' { - // BUG https://github.com/MultiQC/MultiQC/pull/2888 - ext.args = { params.multiqc_title ? "--title \"$params.multiqc_title\" --export" : '--export' } + ext.args = { params.multiqc_title ? "--title \"$params.multiqc_title\"" : '' } publishDir = [ path: { "${params.outdir}/multiqc" }, mode: params.publish_dir_mode, diff --git a/conf/test.config b/conf/test.config index e271b937..cc5193aa 100644 --- a/conf/test.config +++ b/conf/test.config @@ -44,9 +44,4 @@ process { // HACK Tests fail after latest modules update ext.args = { "--disable-small" } } - - // BUG https://github.com/MultiQC/MultiQC/pull/2888 - withName: 'MULTIQC' { - ext.args = { params.multiqc_title ? "--title \"$params.multiqc_title\"" : '' } - } } diff --git a/tests/nextflow.config b/tests/nextflow.config index fc18e8a8..3aba030e 100644 --- a/tests/nextflow.config +++ b/tests/nextflow.config @@ -48,9 +48,4 @@ process { // HACK Tests fail after latest modules update ext.args = { "--disable-small" } } - - // BUG https://github.com/MultiQC/MultiQC/pull/2888 - withName: 'MULTIQC' { - ext.args = { params.multiqc_title ? "--title \"$params.multiqc_title\"" : '' } - } }