NoSuchFileException: https://raw.githubusercontent.com/biocore/sortmerna/v4.3.4/data/rRNA_databases/rfam-5.8s-database-id98.fasta

[sopenaml]

Description of the bug

Can't find sortmerna/v4.3.4/ databases. i've seen in a repo for the rnaseq pipeline that this was cause because the database had changed location in the repo. Could anyone please help?

Thanks

Command used and terminal output

nextflow pull nf-core/riboseq -r 1.0.1

nextflow run nf-core/riboseq \
-profile crick \
--input riboseqdesign.csv \
--outdir nfcoreRiboseq \
--fasta Mus_musculus.GRCm38.dna_sm.toplevel.fa \
--gtf Mus_musculus.GRCm38.95.gtf \
--extra_ribotricer_prepareorfs_args "--min_orf_length 15 --start_codons ATG,CTG,GTG,TTG,ATT,ACG,ATA,ATC,CTT,GCT" \
-r 1.0.1 \
-resume

ERROR ~ No such file or directory: https://raw.githubusercontent.com/biocore/sortmerna/v4.3.4/data/rRNA_databases/rfam-5.8s-database-id98.fasta

 -- Check script '/nemo/stp/babs/working/sopenam/.nextflow/assets/nf-core/riboseq/./workflows/riboseq/../../subworkflows/nf-core/preprocess_rnaseq/main.nf' at line: 192 or see '.nextflow.log' file for more details
Pulling Singularity image https://depot.galaxyproject.org/singularity/multiqc:1.21--pyhdfd78af_0 [cache /flask/apps/misc/stp/babs/nf-core/singularity/depot.galaxyproject.org-singularity-multiqc-1.21--pyhdfd78af_0.img]

Relevant files

No response

System information

No response