diff --git a/workflows/scrnaseq.nf b/workflows/scrnaseq.nf index 8e83d8ff..ae2249c7 100644 --- a/workflows/scrnaseq.nf +++ b/workflows/scrnaseq.nf @@ -43,7 +43,7 @@ workflow SCRNASEQ { params.star_index = getGenomeAttribute('star') params.salmon_index = getGenomeAttribute('simpleaf') params.txp2gene = getGenomeAttribute('simpleaf_tx2pgene') - + // Make cellranger or cellranger-arc index conditional if (params.aligner in ["cellranger", "cellrangermulti"]){ params.cellranger_index = getGenomeAttribute('cellranger')