From e97e1c0a8460a93eae3e0a35637a81626114df8b Mon Sep 17 00:00:00 2001 From: falmeida Date: Tue, 30 Apr 2024 12:54:36 +0000 Subject: [PATCH] change reference and resources used --- tests/main_pipeline_cellrangermulti.test | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/tests/main_pipeline_cellrangermulti.test b/tests/main_pipeline_cellrangermulti.test index ebddd9ff..f84939b1 100644 --- a/tests/main_pipeline_cellrangermulti.test +++ b/tests/main_pipeline_cellrangermulti.test @@ -14,14 +14,14 @@ nextflow_pipeline { cellranger_multi_barcodes = "${baseDir}/assets/cellranger_barcodes_samplesheet.csv" gex_frna_probe_set = "${baseDir}/assets/frna_probeset_subset.csv" fb_reference = "${baseDir}/assets/fb_reference.csv" - fasta = 'https://ftp.ensembl.org/pub/release-110/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.chromosome.2.fa.gz' + fasta = 'https://ftp.ensembl.org/pub/release-110/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.chromosome.14.fa.gz' gtf = 'https://ftp.ensembl.org/pub/release-110/gtf/homo_sapiens/Homo_sapiens.GRCh38.110.gtf.gz' aligner = 'cellrangermulti' protocol = 'auto' // Limit resources so that this can run on GitHub Actions -- for some reason it had not been taken from shared config - max_cpus = 2 - max_memory = '6.GB' + max_cpus = 4 + max_memory = '14.GB' max_time = '6.h' } }