From 1b9d8e96903d95c99b326979fe45b367377b3262 Mon Sep 17 00:00:00 2001
From: mirpedrol <mirp.julia@gmail.com>
Date: Thu, 10 Oct 2024 15:01:34 +0200
Subject: [PATCH] use env variable to check nf-core outdated

---
 .../.github/workflows/template_version_comment.yml            | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/nf_core/pipeline-template/.github/workflows/template_version_comment.yml b/nf_core/pipeline-template/.github/workflows/template_version_comment.yml
index f1f7ae5e8..87a218446 100644
--- a/nf_core/pipeline-template/.github/workflows/template_version_comment.yml
+++ b/nf_core/pipeline-template/.github/workflows/template_version_comment.yml
@@ -26,12 +26,12 @@ jobs:
 
       - name: Check nf-core outdated
         id: nf_core_outdated
-        run: pip list --outdated
+        run: echo "OUTPUT=$(pip list --outdated | grep nf-core)" >> ${GITHUB_ENV}
 
       - name: Post nf-core template version comment
         uses: mshick/add-pr-comment@b8f338c590a895d50bcbfa6c5859251edc8952fc # v2
         if: |
-          contains(steps.nf_core_outdated.outputs.stdout, 'nf-core')
+          contains(env.OUTPUT, 'nf-core')
         with:
           repo-token: ${{ secrets.NF_CORE_BOT_AUTH_TOKEN }}
           allow-repeats: false