From 1c8d74b92816919629d7affa860bd26bf4097377 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Thu, 10 Oct 2024 17:00:46 +0200 Subject: [PATCH] test -> test_name --- nf_core/pipeline-template/.github/workflows/ci.yml | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/nf_core/pipeline-template/.github/workflows/ci.yml b/nf_core/pipeline-template/.github/workflows/ci.yml index be2232be7..d521c91bd 100644 --- a/nf_core/pipeline-template/.github/workflows/ci.yml +++ b/nf_core/pipeline-template/.github/workflows/ci.yml @@ -20,7 +20,7 @@ concurrency: jobs: test: - name: "Run pipeline with test data ({% raw %}${{ matrix.NXF_VER }}{% endraw %} | {% raw %}${{ matrix.test }}{% endraw %} | {% raw %}${{ matrix.profile }}{% endraw %})" + name: "Run pipeline with test data ({% raw %}${{ matrix.NXF_VER }}{% endraw %} | {% raw %}${{ matrix.test_name }}{% endraw %} | {% raw %}${{ matrix.profile }}{% endraw %})" # Only run on push if this is the nf-core dev branch (merged PRs) if: "{% raw %}${{{% endraw %} github.event_name != 'push' || (github.event_name == 'push' && github.repository == '{{ name }}') {% raw %}}}{% endraw %}" runs-on: ubuntu-latest @@ -33,7 +33,7 @@ jobs: - "conda" - "docker" - "singularity" - test: + test_name: # TODO nf-core: You can customise CI pipeline run tests as required - "test" isMaster: @@ -83,6 +83,6 @@ jobs: - name: Clean up Disk space uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1 - - name: "Run pipeline with test data {% raw %}${{ matrix.NXF_VER }}{% endraw %} | {% raw %}${{ matrix.test }}{% endraw %} | {% raw %}${{ matrix.profile }}{% endraw %}" + - name: "Run pipeline with test data {% raw %}${{ matrix.NXF_VER }}{% endraw %} | {% raw %}${{ matrix.test_name }}{% endraw %} | {% raw %}${{ matrix.profile }}{% endraw %}" run: | - nextflow run ${GITHUB_WORKSPACE} -profile {% raw %}${{ matrix.test }}{% endraw %},{% raw %}${{ matrix.profile }}{% endraw %} --outdir ./results + nextflow run ${GITHUB_WORKSPACE} -profile {% raw %}${{ matrix.test_name }}{% endraw %},{% raw %}${{ matrix.profile }}{% endraw %} --outdir ./results