From 3a0ff6d0f0676337866f96f017f1cb3f4e3d1a1a Mon Sep 17 00:00:00 2001 From: mashehu Date: Fri, 11 Oct 2024 09:43:37 +0200 Subject: [PATCH 1/4] remove last mentions of old cli commands --- nf_core/pipelines/create/__init__.py | 2 +- nf_core/pipelines/lint/template_strings.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/nf_core/pipelines/create/__init__.py b/nf_core/pipelines/create/__init__.py index 8b0edf34cf..26e4d23283 100644 --- a/nf_core/pipelines/create/__init__.py +++ b/nf_core/pipelines/create/__init__.py @@ -41,7 +41,7 @@ class PipelineCreateApp(App[utils.CreateConfig]): """A Textual app to manage stopwatches.""" CSS_PATH = "create.tcss" - TITLE = "nf-core create" + TITLE = "nf-core pipelines create" SUB_TITLE = "Create a new pipeline with the nf-core pipeline template" BINDINGS = [ ("d", "toggle_dark", "Toggle dark mode"), diff --git a/nf_core/pipelines/lint/template_strings.py b/nf_core/pipelines/lint/template_strings.py index 37a1f64daf..11c5e82516 100644 --- a/nf_core/pipelines/lint/template_strings.py +++ b/nf_core/pipelines/lint/template_strings.py @@ -5,7 +5,7 @@ def template_strings(self): """Check for template placeholders. - The ``nf-core create`` pipeline template uses + The ``nf-core pipelines create`` pipeline template uses `Jinja `_ behind the scenes. This lint test fails if any Jinja template variables such as From 1071a30aafe0c5f9d8e9b36c213e5e907eb06634 Mon Sep 17 00:00:00 2001 From: mashehu Date: Fri, 11 Oct 2024 09:48:04 +0200 Subject: [PATCH 2/4] fix changelog --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 30c5302ba1..39e34adeaa 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,6 +1,6 @@ # nf-core/tools: Changelog -## 3.0.2dev +## v3.0.2dev ### Template From 945c921cd28768d6d2ba13839b9093ddc29ab230 Mon Sep 17 00:00:00 2001 From: mashehu Date: Fri, 11 Oct 2024 09:55:52 +0200 Subject: [PATCH 3/4] add missing section into changelog --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 792baf0856..747cc3941c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -15,6 +15,8 @@ ### Subworkflows +### General + ## [v3.0.1 - Titanium Tapir Patch](https://github.com/nf-core/tools/releases/tag/3.0.1) - [2024-10-09] ### Template From d9776bf1c3130024b40bbaea821d08cd5157ce31 Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Fri, 11 Oct 2024 07:57:12 +0000 Subject: [PATCH 4/4] [automated] Update CHANGELOG.md --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 747cc3941c..06b20c5aa9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -17,6 +17,8 @@ ### General +- Use updated pipeline commands in docstrings ([#3215](https://github.com/nf-core/tools/pull/3215)) + ## [v3.0.1 - Titanium Tapir Patch](https://github.com/nf-core/tools/releases/tag/3.0.1) - [2024-10-09] ### Template