From 89961d6d62f7c1c4ba64181efa1169a52eb0e670 Mon Sep 17 00:00:00 2001
From: Matthias Zepper <MatthiasZepper@users.noreply.github.com>
Date: Fri, 4 Oct 2024 16:17:42 +0200
Subject: [PATCH] Tidy Jinja template markup.

---
 CHANGELOG.md                                               | 1 +
 .../.github/workflows/download_pipeline.yml                | 7 +++----
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 12a0c9911..717e82a48 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -43,6 +43,7 @@
 - Remove if/else block to include `igenomes.config` ([#3168](https://github.com/nf-core/tools/pull/3168))
 - Fixed release announcement hashtags for Mastodon ([#3099](https://github.com/nf-core/tools/pull/3176))
 - Remove try/catch blocks from `nextflow.config` ([#3167](https://github.com/nf-core/tools/pull/3167))
+- Extend `download_pipeline.yml` to count pre-downloaded container images. ([#3182](https://github.com/nf-core/tools/pull/3182))
 
 ### Linting
 
diff --git a/nf_core/pipeline-template/.github/workflows/download_pipeline.yml b/nf_core/pipeline-template/.github/workflows/download_pipeline.yml
index 29a9e8b5d..8d70f3896 100644
--- a/nf_core/pipeline-template/.github/workflows/download_pipeline.yml
+++ b/nf_core/pipeline-template/.github/workflows/download_pipeline.yml
@@ -74,7 +74,7 @@ jobs:
           --download-configuration 'yes'
 
       - name: Inspect download
-        run: tree ./${{ env.REPOTITLE_LOWERCASE }}{% endraw %}{% if test_config %}{% raw %}
+        run: tree ./${{ env.REPOTITLE_LOWERCASE }}{% if test_config %}
 
       - name: Count the downloaded number of container images
         id: count_initial
@@ -96,7 +96,7 @@ jobs:
         env:
           NXF_SINGULARITY_CACHEDIR: ./singularity_container_images
           NXF_SINGULARITY_HOME_MOUNT: true
-        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -profile test,singularity --outdir ./results{% endraw %}{% endif %}
+        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -profile test,singularity --outdir ./results
 
       - name: Count the downloaded number of container images
         id: count_afterwards
@@ -107,7 +107,6 @@ jobs:
 
       - name: Compare container image counts
         run: |
-          {% raw %}
           if [ "${{ env.IMAGE_COUNT_INITIAL }}" -ne "${{ env.IMAGE_COUNT_AFTER }}" ]; then
             initial_count=${{ env.IMAGE_COUNT_INITIAL }}
             final_count=${{ env.IMAGE_COUNT_AFTER }}
@@ -118,4 +117,4 @@ jobs:
           else
             echo "The pipeline can be downloaded successfully!"
           fi
-          {% endraw %}
+          {% endif %}{% endraw %}