From a506b1d50cdec4e41890ced0c61b957f99cb9f1c Mon Sep 17 00:00:00 2001
From: mirpedrol <mirp.julia@gmail.com>
Date: Tue, 8 Oct 2024 10:55:54 +0200
Subject: [PATCH 1/2] review suggestions by @mashehu

---
 .github/workflows/create-test-wf.yml   | 4 ----
 README.md                              | 2 +-
 nf_core/components/list.py             | 2 +-
 nf_core/components/nfcore_component.py | 4 ++--
 nf_core/modules/modules_differ.py      | 4 ++--
 5 files changed, 6 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/create-test-wf.yml b/.github/workflows/create-test-wf.yml
index 09c5b01c37..782a08ac9f 100644
--- a/.github/workflows/create-test-wf.yml
+++ b/.github/workflows/create-test-wf.yml
@@ -71,10 +71,6 @@ jobs:
           mkdir create-test-wf && cd create-test-wf
           export NXF_WORK=$(pwd)
           nf-core --log-file log.txt pipelines create -n testpipeline -d "This pipeline is for testing" -a "Testing McTestface"
-          # echo current directory
-          pwd
-          # echo content of current directory
-          ls -la
           nextflow run nf-core-testpipeline -profile self_hosted_runner,test --outdir ./results
 
       - name: Upload log file artifact
diff --git a/README.md b/README.md
index 58fb708a0d..3597f1ea1e 100644
--- a/README.md
+++ b/README.md
@@ -21,7 +21,7 @@ For documentation of the internal Python functions, please refer to the [Tools P
 
 ## Installation
 
-For full installation instructions, please see the [nf-core documentation](https://nf-co.re/docs/usage/tools).
+For full installation instructions, please see the [nf-core documentation](https://nf-co.re/docs/nf-core-tools/installation).
 Below is a quick-start for those who know what they're doing:
 
 ### Bioconda
diff --git a/nf_core/components/list.py b/nf_core/components/list.py
index 05a8f71120..4c20e60864 100644
--- a/nf_core/components/list.py
+++ b/nf_core/components/list.py
@@ -25,7 +25,7 @@ def __init__(
         self.remote = remote
         super().__init__(component_type, pipeline_dir, remote_url, branch, no_pull)
 
-    def _configure_repo_and_paths(self, nf_dir_req=True) -> None:
+    def _configure_repo_and_paths(self, nf_dir_req: bool = True) -> None:
         """
         Override the default with nf_dir_req set to False to allow
         info to be run from anywhere and still return remote info
diff --git a/nf_core/components/nfcore_component.py b/nf_core/components/nfcore_component.py
index 9cce94acb5..37e43a536e 100644
--- a/nf_core/components/nfcore_component.py
+++ b/nf_core/components/nfcore_component.py
@@ -5,7 +5,7 @@
 import logging
 import re
 from pathlib import Path
-from typing import Any, List, Optional, Tuple, Union
+from typing import Any, Dict, List, Optional, Tuple, Union
 
 log = logging.getLogger(__name__)
 
@@ -50,7 +50,7 @@ def __init__(
         self.passed: List[Tuple[str, str, Path]] = []
         self.warned: List[Tuple[str, str, Path]] = []
         self.failed: List[Tuple[str, str, Path]] = []
-        self.inputs: List[list[dict[str, dict[str, str]]]] = []
+        self.inputs: List[List[Dict[str, Dict[str, str]]]] = []
         self.outputs: List[str] = []
         self.has_meta: bool = False
         self.git_sha: Optional[str] = None
diff --git a/nf_core/modules/modules_differ.py b/nf_core/modules/modules_differ.py
index b6d7f0d0fa..f9ba9d30c7 100644
--- a/nf_core/modules/modules_differ.py
+++ b/nf_core/modules/modules_differ.py
@@ -391,8 +391,8 @@ def get_new_and_old_lines(patch):
     def try_apply_single_patch(file_lines, patch, reverse=False):
         """
         Tries to apply a patch to a modified file. Since the line numbers in
-        the patch does not agree if the file is modified, the old and new
-        lines inpatch are reconstructed and then we look for the old lines
+        the patch do not agree if the file is modified, the old and new
+        lines in the patch are reconstructed and then we look for the old lines
         in the modified file. If all hunk in the patch are found in the new file
         it is updated with the new lines from the patch file.
 

From 0cfca702cc93b65274098c238228dd24649fce6a Mon Sep 17 00:00:00 2001
From: mirpedrol <mirp.julia@gmail.com>
Date: Tue, 8 Oct 2024 10:56:22 +0200
Subject: [PATCH 2/2] update release date

---
 CHANGELOG.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 1904cd99c0..7b42046fcc 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,6 +1,6 @@
 # nf-core/tools: Changelog
 
-## [v3.0.0 - Titanium Tapir](https://github.com/nf-core/tools/releases/tag/3.0.0) - [2024-10-07]
+## [v3.0.0 - Titanium Tapir](https://github.com/nf-core/tools/releases/tag/3.0.0) - [2024-10-08]
 
 **Highlights**