From ac3d57772d36b2bcaebb0410d41a3d14e8659eb2 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=BAlia=20Mir=20Pedrol?= <mirp.julia@gmail.com>
Date: Thu, 10 Oct 2024 15:26:50 +0000
Subject: [PATCH] minimise raw and endraw blocks

---
 .../.github/workflows/ci.yml                  | 20 +++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/nf_core/pipeline-template/.github/workflows/ci.yml b/nf_core/pipeline-template/.github/workflows/ci.yml
index e935f12d1..59be65ed6 100644
--- a/nf_core/pipeline-template/.github/workflows/ci.yml
+++ b/nf_core/pipeline-template/.github/workflows/ci.yml
@@ -1,5 +1,5 @@
 name: nf-core CI
-# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
+# {% raw %}This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
 on:
   push:
     branches:
@@ -11,18 +11,18 @@ on:
 
 env:
   NXF_ANSI_LOG: false
-  NXF_SINGULARITY_CACHEDIR: {% raw %}${{ github.workspace }}{% endraw %}/.singularity
-  NXF_SINGULARITY_LIBRARYDIR: {% raw %}${{ github.workspace }}{% endraw %}/.singularity
+  NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity
+  NXF_SINGULARITY_LIBRARYDIR: ${{ github.workspace }}/.singularity
 
 concurrency:
-  group: "{% raw %}${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}{% endraw %}"
+  group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}"
   cancel-in-progress: true
 
 jobs:
   test:
-    name: "Run pipeline with test data ({% raw %}${{ matrix.NXF_VER }}{% endraw %} | {% raw %}${{ matrix.test_name }}{% endraw %} | {% raw %}${{ matrix.profile }}{% endraw %})"
+    name: "Run pipeline with test data (${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }})"
     # Only run on push if this is the nf-core dev branch (merged PRs)
-    if: "{% raw %}${{{% endraw %} github.event_name != 'push' || (github.event_name == 'push' && github.repository == '{{ name }}') {% raw %}}}{% endraw %}"
+    if: "${{{% endraw %} github.event_name != 'push' || (github.event_name == 'push' && github.repository == '{{ name }}') {% raw %}}}"
     runs-on: ubuntu-latest
     strategy:
       matrix:
@@ -36,7 +36,7 @@ jobs:
         test_name:
           - "test"
         isMaster:
-          - {% raw %}${{ github.base_ref == 'master' }}{% endraw %}
+          - ${{ github.base_ref == 'master' }}
         # Exclude conda and singularity on dev
         exclude:
           - isMaster: false
@@ -50,7 +50,7 @@ jobs:
       - name: Set up Nextflow
         uses: nf-core/setup-nextflow@v2
         with:
-          version: "{% raw %}${{ matrix.NXF_VER }}{% endraw %}"
+          version: "${{ matrix.NXF_VER }}"
 
       - name: Set up Apptainer
         if: matrix.profile == 'singularity'
@@ -83,6 +83,6 @@ jobs:
       - name: Clean up Disk space
         uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
 
-      - name: "Run pipeline with test data {% raw %}${{ matrix.NXF_VER }}{% endraw %} | {% raw %}${{ matrix.test_name }}{% endraw %} | {% raw %}${{ matrix.profile }}{% endraw %}"
+      - name: "Run pipeline with test data ${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }}"
         run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile {% raw %}${{ matrix.test_name }}{% endraw %},{% raw %}${{ matrix.profile }}{% endraw %} --outdir ./results
+          nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test_name }},${{ matrix.profile }} --outdir ./results{% endraw %}