diff --git a/nextflow.config b/nextflow.config index 3246392..a7fea87 100644 --- a/nextflow.config +++ b/nextflow.config @@ -13,9 +13,10 @@ params { // Input options input = null outdir = "results" - sample = null // "HG002,SEQC2" - analysis = null // "germline,somatic" - sdf = null // The SDF format file needed by rtgtools + sample = null + analysis = null + sdf = null + dictionary = null liftover = false // Benchmarking method @@ -24,8 +25,8 @@ params { // Preprocess spesific parameters // normalization includes braking down multiallelic samples -m any // deduplication removes one of the variants in the same position - preprocess = "" //normalization,deduplication,prepy,filter_contigs - sv_standardization = "" // homogenize,svync + preprocess = "" + sv_standardization = "" // Filtering parameters // minsize effects both truvari and variantbenchmarkingmark in different ways! svbechmark filters both base and comp calls