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I am not sure if wittyer works as expected. The tool has many issues for unconvetional vcfs: might require too many preprocessing to operate. Thinking about abandoning it..
Description of the bug
wittyer seems to work without an error but does not report TP/FP/FN report correctly. Some tags might be missing in the VCF input files
Command used and terminal output
No response
Relevant files
No response
System information
No response
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