DESCRIPTION

Package: stana
Type: Package
Title: Metagenotyping analysis in R
Version: 0.99.0
License: GPL-3
Description: The package aims to analyze intra-species diversity from metagenomics. The package supports the loading functions for single nucleotide variants and copy number variant profiles, filtering, and statistical analysis.
Authors@R: person("Noriaki", "Sato", email = "nori@hgc.jp", role = c("cre", "aut"))
Depends: ggplot2, ggraph, igraph, vegan, phangorn
Imports: GetoptLong, BiocFileCache, RCurl, methods, data.table, RColorBrewer, ggtree, circlize, ComplexHeatmap, ggkegg, ape, dplyr, exactRankTests, ggblend, ggh4x, scales, tidygraph, ggplotify, ggtreeExtra, ggnewscale, scico, MKmisc, NMF, pillar, cowplot, patchwork, reshape2, Boruta, tidyr, stringr, clusterProfiler, grDevices, stats, utils, BiocStyle, ggstar
Suggests: simplifyEnrichment, knitr, rmarkdown, NNLM, shiny, matrixStats
RoxygenNote: 7.3.2
biocViews: Microbiome
VignetteBuilder: knitr