./hpg-pore.sh events Fails

[rtmag]

Hello developers,

I am quite keen on using your tools, specifically the events program. I am using the following command:

./hpg-pore.sh events --in /home/rtm/nanopore/data/reads/pass/4YN3PYI_20161101_FNFAB42331_MN19395_read13_strand.fast5 --out /home/rtm/nanopore/event_out/

however I have the following error:

at org.opencb.hpg_pore.NativePoreSupport.loadLibrary(NativePoreSupport.java:46) at org.opencb.hpg_pore.EventsCmd.runLocalEventsCmd(EventsCmd.java:59) at org.opencb.hpg_pore.EventsCmd.run(EventsCmd.java:44) at org.opencb.hpg_pore.Main.main(Main.java:38)

There were warnings during the build, but no errors. There is a raised warning regarding the event function:

org_opencb_hpg_pore_NativePoreSupport.c: In function ‘Java_org_opencb_hpg_1pore_NativePoreSupport_getEvents’: org_opencb_hpg_pore_NativePoreSupport.c:49:14: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] char *src = (*env)->GetStringUTFChars(env, source, 0);

Any idea on what is going wrong?

Thank you!
RTM

[tstrobaugh]

Similar issue, can't find a solution:

./hpg-pore.sh stats --in minion.fast5 --out out-stats

Exception in thread "main" java.lang.NullPointerException
at org.opencb.hpg_pore.NativePoreSupport.loadLibrary(NativePoreSupport.java:46)
at org.opencb.hpg_pore.StatsCmd.runLocalStatsCmd(StatsCmd.java:60)
at org.opencb.hpg_pore.StatsCmd.run(StatsCmd.java:44)
at org.opencb.hpg_pore.Main.main(Main.java:26)