v2.6.0

What's Changed

• TASK-2297 - Upgrade MongoDB version to 5.0.14 by @pfurio in #2222
• TASK-2242 - Improve mutational signature analysis by @jtarraga in #2216
• TASK-1201 - Use dataRelease from Cellbase in OpenCGA by @j-coll in #2226
• TASK-2390 - Improvements in multi-repository development by @juanfeSanahuja in #2225
• TASK-2274 - HRDetect analysis for mutational signatures by @jtarraga in #2217
• TASK-2303 - Remove hybrid selection (HS) metrics from alignment QC analysis by @jtarraga in #2227
• TASK-1290 - Improve file upload parameters by @juanfeSanahuja in #2221
• TASK-2438 - Add variant query param "geneRoleInCancer" by @j-coll in #2228
• TASK-2294 - Include homalt count from aggregated vcf files by @j-coll in #2215

Full Changelog: v2.4.12...v2.6.0

v2.4.12

What's Changed

• TASK-2437 - Operation jobs jam on duplicated operations by @j-coll in #2206
• TASK-2484 - Error fetching jobs to reuse with multiple studies with the same id by @j-coll in #2213
• TASK-2421 - Operation 'variant-stats-index' ignores the AggregationMappingFile by @j-coll in #2202
• TASK-2387 - Fix interpretation save by @jtarraga in #2198
• TASK-2364 - RegionTooBusyException - StoreTooBusy - Above parallelPutToStoreThreadLimit(10) by @j-coll in #2203
• TASK-2014 - Panel intersection between panel and single position regions (chr:pos) not working by @j-coll in #2218
• TASK-2342 - Error at variant-index "SQLException: ERROR 201 (22000): Illegal data" by @j-coll in #2195
• TASK-1323 - NPE at operations variant-configure by @juanfeSanahuja in #2212
• TASK-2204 - Variant query issue when using includeInterpretation by @jtarraga in #2188
• TASK-2418 - Interpretation create forces to contain all panels by @pfurio in #2205
• TASK-2496 - Error running variant-index : ClassCastException: java.net.URI cannot be cast to java.lang.String by @j-coll in #2214
• TASK-2316 - Fix sample file when executing Exomiser with families by @jtarraga in #2191
• TASK-2357 - Cohort Browser error when trying to filter by more than one cohort type by @pfurio in #2199
• TASK-2347 - Distinct should not return null values by @pfurio in #2192
• TASK-2300 - Unable to filter by gene using HGNC ID by @j-coll in #2204
• TASK-2511 - Error in upload file by @juanfeSanahuja in #2219

Full Changelog: v2.4.11...v2.4.12

v2.4.10.1

What's Changed

• TASK-2437 - Operation jobs jam on duplicated operations by @j-coll in #2206

Full Changelog: v2.4.10...v2.4.10.1

v2.4.11

What's Changed

• TASK-2167 - Fix multi-sample (family) Exomiser analysis by @jtarraga in #2176
• TASK-2263 - Unable to variant-prune after variant-study-delete by @j-coll in #2185
• TASK-2285 - Error running variant-prune - "cohort ALL not found in variant" by @j-coll in #2186
• TASK-2337 - Interpretation locking inconsistency issue: a locked secondary interpretation can not be promoted to primary, but a locked primary can be demoted to secondary by @pfurio in #2193
• TASK-2276 - TPED exports more samples than expected when using PhoenixVariantTableInputFormat by @j-coll in #2196
• TASK-2381 - Multiple HBase connections opened at MapReduce by @j-coll in #2197
• TASK-1087 - Job variant-family indexing - OutOfMemoryError, although job status listed as DONE by @j-coll in #2181
• TASK-2290 - Fix disorder filter split by @pfurio in #2189
• TASK-2227 - VariantExportParams includeGenotype and includeSampleId should be boolean instead of String by @j-coll in #2180
• TASK-2420 - Sample-variant-stats error 'Unable to index with indexId='ALL' if query is not empty' by @j-coll in #2201

Full Changelog: v2.4.10...v2.4.11

v2.5.0

Full Changelog: v2.4.10...v2.5.0

v2.2.10

What's Changed

• TASK-2277: Empty results in RGA variant query by @pfurio in #2182

Full Changelog: v2.2.9...v2.2.10

v2.4.10

What's Changed

• TASK-2230 - Allow variant family export directly from secondary sample index by @j-coll in #2172
• TASK-2215 - Fix family quality control (relatedness) when saving in OpenCGA catalog by @jtarraga in #2177
• TASK-2215 - Fix family quality control (relatedness) when saving in OpenCGA catalog by @jtarraga in #2179
• TASK-2261 - Limit not working with SampleIndexOnlyVariantQueryExecutor by @j-coll in #2178
• TASK-2237 - Incorrect runtime value when the job fails with error by @j-coll in #2175
• TASK-1245 - Error installing catalog in dirty database by @pfurio in #2174

Full Changelog: v2.4.9...v2.4.10

v2.4.9

What's Changed

• TASK-2201 - ArrayIndexOutOfBoundsException rebuilding secondary sample index with duplicated variants by @j-coll in #2169
• TASK-2224 - Variant Query Timeout with impossible cohort stats filter values by @j-coll in #2168
• TASK-2212 - Mutational Signatures query endpoint is not returning counts by @jtarraga in #2171

Full Changelog: v2.4.8...v2.4.9

v2.2.9

What's Changed

• TASK-2111 - 'and' queries not working in RGA by @pfurio in #2158
• TASK-2111 by @pfurio in #2167
• TASK-2111 by @pfurio in #2170

Full Changelog: v2.2.8...v2.2.9

v2.4.8

What's Changed

• TASK-2188 - Migration task failed for migrate_to_clinical_acmg_TASK-1194 by @pfurio in #2164
• TASK-2206 - Fix alignment quality control (QC) analysis by @jtarraga in #2166
• TASK-2195 - Filter by DeNovo Strict variants by @j-coll in #2165

Full Changelog: v2.4.7...v2.4.8