[PRE REVIEW]: PeriDEM - High-fidelity modeling of granular media consisting of deformable complex-shaped particles

[editorialbot]

Submitting author: @prashjha (Prashant K Jha)
Repository: https://github.com/prashjha/PeriDEM
Branch with paper.md (empty if default branch): joss
Version: v0.2.1
Editor: @matthewfeickert
Reviewers: Pending
Managing EiC: Kyle Niemeyer

Status

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[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.90  T=0.59 s (634.3 files/s, 305826.6 lines/s)
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Language                     files          blank        comment           code
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C/C++ Header                   158          11551          22547          36252
Python                          38           5991           6508          15856
C++                             57           3590           2435          13231
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YAML                            23            155            184           3862
CSS                              5            506            169           2269
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JavaScript                       6             72            124            280
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make                             2             15              6             33
reStructuredText                 1              0              0              2
Bazel                            1              0              0              1
-------------------------------------------------------------------------------
SUM:                           374          24244          33177         122913
-------------------------------------------------------------------------------

Commit count by author:

   178	Prashant K. Jha
    11	prashjha

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 2040

✅ The paper includes a Statement of need section

[editorialbot]

License info:

✅ License found: Boost Software License 1.0 (Valid open source OSI approved license)

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1007/s10704-020-00480-0 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Introduction to peridynamics
- No DOI given, and none found for title: Finite element approximation of nonlocal dynamic f...
- No DOI given, and none found for title: METIS: A software package for partitioning unstruc...
- No DOI given, and none found for title: Peridynamic states and constitutive modeling
- No DOI given, and none found for title: nanoflann: a C++ header-only fork of FLANN, a libr...

❌ MISSING DOIs

- 10.1680/geot.1979.29.1.47 may be a valid DOI for title: A discrete numerical model for granular assemblies
- 10.1016/j.jmps.2021.104376 may be a valid DOI for title: Peridynamics-based discrete element method (PeriDE...
- 10.2172/1895 may be a valid DOI for title: Reformulation of elasticity theory for discontinui...
- 10.1137/17m1112236 may be a valid DOI for title: Numerical analysis of nonlocal fracture models in ...
- 10.1016/j.cma.2019.03.024 may be a valid DOI for title: Numerical convergence of finite difference approxi...
- 10.1002/nme.5791 may be a valid DOI for title: Numerical convergence of nonlinear nonlocal contin...
- 10.1007/s42102-019-00010-0 may be a valid DOI for title: Complex fracture nucleation and evolution with non...
- 10.1007/s10659-013-9463-0 may be a valid DOI for title: Dynamic brittle fracture as a small horizon limit ...
- 10.1016/j.powtec.2018.09.047 may be a valid DOI for title: A rheometry based calibration of a first-order DEM...
- 10.1109/tpds.2021.3104255 may be a valid DOI for title: Taskflow: A lightweight parallel and heterogeneous...

❌ INVALID DOIs

- None

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[kyleniemeyer]

Hi @prashjha, can you address this missing DOI messages above?

@matthewfeickert could you edit this submission?

Just for full disclosure, @prashjha is a JOSS editor.

[editorialbot]

Five most similar historical JOSS papers:

NLMech: Implementation of finite difference/meshfree discretization of nonlocal fracture models
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Reviewers: @vijaysm, @chennachaos
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Stokesian Dynamics in Python
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$hp\mathrm{3D}$: A Scalable MPI/OpenMP $hp$-Adaptive Finite Element Software Library for Complex Multiphysics Applications
Submitting author: @stefanhenneking
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Akantu: an HPC finite-element library for contact and dynamic fracture simulations
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cRacklet: a spectral boundary integral method library for interfacial rupture simulation
Submitting author: @tiburoch
Handling editor: @diehlpk (Active)
Reviewers: @srmnitc, @kylebeggs
Similarity score: 0.6528

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

[kyleniemeyer]

@editorialbot invite @matthewfeickert as editor

[editorialbot]

Invitation to edit this submission sent!

[prashjha]

@editorialbot generate pdf

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[prashjha]

@editorialbot check references

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1680/geot.1979.29.1.47 is OK
- 10.1007/s10704-020-00480-0 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Introduction to peridynamics
- No DOI given, and none found for title: METIS: A software package for partitioning unstruc...
- No DOI given, and none found for title: nanoflann: a C++ header-only fork of FLANN, a libr...

❌ MISSING DOIs

- None

❌ INVALID DOIs

- https://doi.org/10.1016/j.jmps.2021.104376 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1016/S0022-5096(99)00029-0 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1137/17M1112236 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1016/j.cma.2019.03.024 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1002/nme.5791 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1007/s42102-019-00010-0 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.3934/dcdsb.2020178 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1007/s10659-013-9463-0 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1007/s10659-007-9125-1 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1016/j.powtec.2018.09.047 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1109/TPDS.2021.3104255 is INVALID because of 'https://doi.org/' prefix

[editorialbot]

Five most similar historical JOSS papers:

NLMech: Implementation of finite difference/meshfree discretization of nonlocal fracture models
Submitting author: @diehlpk
Handling editor: @Kevin-Mattheus-Moerman (Active)
Reviewers: @vijaysm, @chennachaos
Similarity score: 0.6791

Stokesian Dynamics in Python
Submitting author: @Pecnut
Handling editor: @philipcardiff (Active)
Reviewers: @rajeshrinet, @szwiep
Similarity score: 0.6498

cRacklet: a spectral boundary integral method library for interfacial rupture simulation
Submitting author: @tiburoch
Handling editor: @diehlpk (Active)
Reviewers: @srmnitc, @kylebeggs
Similarity score: 0.6492

Tamaas: a library for elastic-plastic contact of periodic rough surfaces
Submitting author: @prs513rosewood
Handling editor: @Kevin-Mattheus-Moerman (Active)
Reviewers: @likask, @agshvarts, @srmnitc, @chennachaos
Similarity score: 0.6471

Akantu: an HPC finite-element library for contact and dynamic fracture simulations
Submitting author: @nrichart
Handling editor: @diehlpk (Active)
Reviewers: @vijaysm, @chennachaos
Similarity score: 0.6406

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

[prashjha]

@editorialbot check references

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1680/geot.1979.29.1.47 is OK
- 10.1016/j.jmps.2021.104376 is OK
- 10.1016/S0022-5096(99)00029-0 is OK
- 10.1137/17M1112236 is OK
- 10.1016/j.cma.2019.03.024 is OK
- 10.1002/nme.5791 is OK
- 10.1007/s10704-020-00480-0 is OK
- 10.1007/s42102-019-00010-0 is OK
- 10.3934/dcdsb.2020178 is OK
- 10.1007/s10659-013-9463-0 is OK
- 10.1007/s10659-007-9125-1 is OK
- 10.1016/j.powtec.2018.09.047 is OK
- 10.1109/TPDS.2021.3104255 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Introduction to peridynamics
- No DOI given, and none found for title: METIS: A software package for partitioning unstruc...
- No DOI given, and none found for title: nanoflann: a C++ header-only fork of FLANN, a libr...

❌ MISSING DOIs

- None

❌ INVALID DOIs

- None

[prashjha]

@editorialbot generate pdf

[prashjha]

Hi @kyleniemeyer, missing dois are fixed. Thank you!

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[editorialbot]

Five most similar historical JOSS papers:

NLMech: Implementation of finite difference/meshfree discretization of nonlocal fracture models
Submitting author: @diehlpk
Handling editor: @Kevin-Mattheus-Moerman (Active)
Reviewers: @vijaysm, @chennachaos
Similarity score: 0.6784

Stokesian Dynamics in Python
Submitting author: @Pecnut
Handling editor: @philipcardiff (Active)
Reviewers: @rajeshrinet, @szwiep
Similarity score: 0.6487

cRacklet: a spectral boundary integral method library for interfacial rupture simulation
Submitting author: @tiburoch
Handling editor: @diehlpk (Active)
Reviewers: @srmnitc, @kylebeggs
Similarity score: 0.6469

Tamaas: a library for elastic-plastic contact of periodic rough surfaces
Submitting author: @prs513rosewood
Handling editor: @Kevin-Mattheus-Moerman (Active)
Reviewers: @likask, @agshvarts, @srmnitc, @chennachaos
Similarity score: 0.6464

Akantu: an HPC finite-element library for contact and dynamic fracture simulations
Submitting author: @nrichart
Handling editor: @diehlpk (Active)
Reviewers: @vijaysm, @chennachaos
Similarity score: 0.6393

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

[matthewfeickert]

@editorialbot assign @matthewfeickert as editor

[editorialbot]

Assigned! @matthewfeickert is now the editor

[matthewfeickert]

(I'm currently traveling for a work conference so I will be delayed a few days on finding reviewers.)

[prashjha]

Hi @matthewfeickert, no worries. I look forward to working with you on this. If you need any suggestions for potential reviewers, please let me know.

[prashjha]

@editorialbot generate pdf

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[editorialbot]

Five most similar historical JOSS papers:

NLMech: Implementation of finite difference/meshfree discretization of nonlocal fracture models
Submitting author: @diehlpk
Handling editor: @Kevin-Mattheus-Moerman (Active)
Reviewers: @vijaysm, @chennachaos
Similarity score: 0.6850

cRacklet: a spectral boundary integral method library for interfacial rupture simulation
Submitting author: @tiburoch
Handling editor: @diehlpk (Active)
Reviewers: @srmnitc, @kylebeggs
Similarity score: 0.6560

Tamaas: a library for elastic-plastic contact of periodic rough surfaces
Submitting author: @prs513rosewood
Handling editor: @Kevin-Mattheus-Moerman (Active)
Reviewers: @likask, @agshvarts, @srmnitc, @chennachaos
Similarity score: 0.6547

$hp\mathrm{3D}$: A Scalable MPI/OpenMP $hp$-Adaptive Finite Element Software Library for Complex Multiphysics Applications
Submitting author: @stefanhenneking
Handling editor: @jedbrown (Active)
Reviewers: @peterrum, @likask
Similarity score: 0.6520

Stokesian Dynamics in Python
Submitting author: @Pecnut
Handling editor: @philipcardiff (Active)
Reviewers: @rajeshrinet, @szwiep
Similarity score: 0.6519

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.