Repositories list

• PAGER

  Public
  PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies and epistasis investigation. PAGER dynamically encodes genetic variants or multi-locus genotypes (MLG) by normalizing mean phenotypic differences between genotype/MLG classes.

  encodinggwasgenetics+ 9epistasisadditive-modelsheterosisgenetic-interactionsdominance-analysisgenotype-to-phenotypenon-additive-effects+ 2

  Python

  •1•1•0•0•Updated Oct 16, 2024Oct 16, 2024

• tpot2

  Public
  A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

  data-sciencemachine-learningautomation+ 17random-forestscikit-learnaimlmodel-selectionhyperparameter-optimizationfeature-engineeringautoml+ 10

  Jupyter Notebook

  •

  GNU Lesser General Public License v3.0

  •26•193•48•2•Updated Oct 10, 2024Oct 10, 2024

• escargot

  Public
  Python

  •

  MIT License

  •0•2•0•0•Updated Oct 8, 2024Oct 8, 2024

• Aliro

  Public
  Aliro: AI-Driven Data Science

  aimlalzheimers-diseaseautoml+ 6alzheimeralzheimersniaadspag066833u01ag066833

  JavaScript

  •

  GNU General Public License v3.0

  •63•224•58•32•Updated Oct 7, 2024Oct 7, 2024

• SynTwin

  Public
  SynTwin: A graph-based approach for predicting clinical outcomes using digital twins derived from synthetic patients

  Jupyter Notebook

  •0•1•0•0•Updated Oct 2, 2024Oct 2, 2024

• pmlb

  Public
  PMLB: A large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms.

  Python

  •

  MIT License

  •133•804•16•4•Updated Sep 10, 2024Sep 10, 2024

• AlzKB

  Public
  aimlalzheimers-diseaseautoml+ 6alzheimeralzheimersniaadspag066833u01ag066833

  Python

  •2•8•0•0•Updated Sep 3, 2024Sep 3, 2024

• latent_phenotype_project

  Public
  Python

  •

  MIT License

  •0•1•0•0•Updated Aug 9, 2024Aug 9, 2024

• PSB25_ADSP_GIG

  Public
  0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

• tpot

  Public
  A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

  automationaimlmodel-selection+ 17hyperparameter-optimizationgradient-boostingautomated-machine-learningparameter-tuningalzheimeralzheimersnia+ 10

  Python

  •

  GNU Lesser General Public License v3.0

  •1.6k•9.7k•282•13•Updated Jul 25, 2024Jul 25, 2024

• AlzKB-updates

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Jul 23, 2024Jul 23, 2024

• KRAGEN

  Public
  Software to implement GoT with a weviate vectorized database

  Python

  •

  MIT License

  •39•617•17•0•Updated Jun 12, 2024Jun 12, 2024

• STAR_outliers

  Public
  Python

  •

  MIT License

  •1•1•1•0•Updated May 18, 2024May 18, 2024

• tpot2_imputetest

  Public
  Testing complex imputation methods on a Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

  Jupyter Notebook

  •

  GNU Lesser General Public License v3.0

  •26•1•0•0•Updated May 1, 2024May 1, 2024

• tpot2-feedstock

  Public
  A conda-smithy repository for tpot2.

  BSD 3-Clause "New" or "Revised" License

  •4•0•0•0•Updated Apr 24, 2024Apr 24, 2024

• GPT4_and_Review

  Public
  Using GPT-4 to write a scientific review article: a pilot evaluation study

  Python

  •0•2•0•0•Updated Apr 10, 2024Apr 10, 2024

• autoqtl

  Public
  Automated Quantitative Trait Locus Analysis (AutoQTL)

  Python

  •

  GNU General Public License v3.0

  •3•8•0•0•Updated Mar 5, 2024Mar 5, 2024

• epistasis_detection

  Public
  Implementation of an efficient algorithm to compute linear regression models for epistasis that permit varied genetic encodings (penetrance functions) of the interactions of loci and provide statistical evidence for epistasis.

  Jupyter Notebook

  •1•2•0•0•Updated Feb 29, 2024Feb 29, 2024

• EBIC.jl

  Public
  EBIC - a biclustering algorithm in Julia

  Julia

  •

  MIT License

  •0•7•0•0•Updated Jan 24, 2024Jan 24, 2024

• aliroed-pi-gen

  Public
  Tool used to create the AliroEd Raspberry Pi OS images

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •1.6k•0•0•0•Updated Jan 11, 2024Jan 11, 2024

• pmlbr

  Public
  pmlb is an R interface to the Penn Machine Learning Benchmarks data repository

  R

  •

  Other

  •2•8•0•0•Updated Sep 28, 2023Sep 28, 2023

• PSB2024_spine

  Public
  Python

  •0•0•0•0•Updated Sep 25, 2023Sep 25, 2023

• tpot2_gptp_experiments

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 31, 2023Jul 31, 2023

• scikit-mdr

  Public
  A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.

  Python

  •

  MIT License

  •26•126•11•0•Updated Jun 14, 2023Jun 14, 2023

• tpot2-test

  Public
  A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

  Jupyter Notebook

  •

  GNU Lesser General Public License v3.0

  •26•0•0•0•Updated May 31, 2023May 31, 2023

• STAR_outliers_figure_and_table_generation

  Public
  Python

  •0•0•0•0•Updated Apr 14, 2023Apr 14, 2023

• exploration-trie-tpot

  Public
  Comparison of evolutionary algorithms within TPOT using a trie to determine their exploratory nature

  HTML

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Mar 8, 2023Mar 8, 2023

• scikit-rebate

  Public
  A scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning.

  pythondata-sciencefeature-selection

  Python

  •

  MIT License

  •72•408•15•3•Updated Feb 10, 2023Feb 10, 2023

• aliro-imager

  Public
  C

  •

  Other

  •256•0•0•0•Updated Jan 13, 2023Jan 13, 2023

• DTox

  Public
  A knowledge-guided deep learning model for prediction and interpretation of drug toxicity

  HTML

  •

  GNU General Public License v3.0

  •0•4•0•0•Updated Oct 13, 2022Oct 13, 2022