Repositories list

• cohd_api

  Public
  Jupyter Notebook

  •

  Other

  •4•2•2•0•Updated Oct 24, 2024Oct 24, 2024

• ehr_prevalence

  Public
  EHR Prevalence and Co-occurrence Analysis

  Python

  •3•3•0•0•Updated Jul 22, 2024Jul 22, 2024

• PICOX

  Public
  Jupyter Notebook

  •

  MIT License

  •1•1•0•0•Updated Jul 9, 2024Jul 9, 2024

• cohd-rare

  Public
  JavaScript

  •

  Other

  •1•1•0•0•Updated Jul 5, 2024Jul 5, 2024

• PubMed-RCT-Outcome-Extraction

  Public
  MIT License

  •1•3•0•0•Updated Jan 17, 2024Jan 17, 2024

• eMERGE-GIRA-CDE

  Public
  Python

  •0•0•0•0•Updated Oct 19, 2023Oct 19, 2023

• covid_subgrouping

  Public
  COVID-19 Subgrouping

  Jupyter Notebook

  •1•0•0•0•Updated Aug 22, 2023Aug 22, 2023

• GIST

  Public
  GIST 3.0: An Automatic Clinical Trial Generalizability Assessment Framework

  JavaScript

  •1•1•1•1•Updated Jun 22, 2023Jun 22, 2023

• eMERGE-Invitae-Redox

  Public
  Python

  •0•1•0•0•Updated Apr 6, 2023Apr 6, 2023

• eIV-recruitement-support-redcap

  Public
  Python

  •1•0•0•0•Updated Mar 22, 2023Mar 22, 2023

• EvidenceMap_Model

  Public
  a gold standard dataset of randomized controlled trial (RCT) abstracts annotated with the EvidenceMap representation

  Python

  •1•1•0•0•Updated Feb 2, 2023Feb 2, 2023

• COVID19-TrialFinder

  Public
  HTML

  •3•2•1•2•Updated Feb 2, 2023Feb 2, 2023

• doc2hpo

  Public
  Java

  •0•0•1•14•Updated Dec 16, 2022Dec 16, 2022

• mcephe

  Public
  Python

  •1•1•0•7•Updated Dec 8, 2022Dec 8, 2022

• MCR-learning-toolkits

  Public
  Python

  •0•0•0•15•Updated Dec 8, 2022Dec 8, 2022

• ontology-based-clinical-study-categorization

  Public
  Data, source code, and demo for manuscript Ontology-based Classification of Clinical Studies by Their Conditions

  Java

  •1•1•0•0•Updated Jun 30, 2022Jun 30, 2022

• oard-react

  Public
  R

  •3•0•0•0•Updated Apr 25, 2022Apr 25, 2022

• Covid19-Breakthrough

  Public
  R

  •0•0•0•0•Updated Mar 22, 2022Mar 22, 2022

• MedicalCodingSequence

  Public
  This package helps to convert clinical data into Medical Coding Sequences.

  Python

  •0•0•0•0•Updated Jan 6, 2022Jan 6, 2022

• Criteria_Phenotypes_ReferenceforJRRAim1

  Public
  This repository just contains codes for phenotypes used in an exploration project that examines the effects of different criteria combinations. The codes are in concept_id format used by the OMOP CDM standard.

  0•0•0•0•Updated Dec 14, 2021Dec 14, 2021

• COVID19-TrialMatcher

  Public
  An Interactive Interface for the Search of Clinical Trials Matching the Target Trial

  Python

  •1•0•0•0•Updated Oct 30, 2021Oct 30, 2021

• CV_criteria

  Public
  2•0•0•0•Updated Aug 4, 2021Aug 4, 2021

• Intervention_Normalizer

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Jun 25, 2021Jun 25, 2021

• Generalizability_of_RCT_Follow_Up_Time

  Public
  0•0•0•0•Updated Jun 16, 2021Jun 16, 2021

• MD-Attention

  Public
  MD-informed Self-Attention: a neuro-symbolic model for machine reading comprehension of clinical research literature.

  Python

  •2•0•0•0•Updated Apr 9, 2021Apr 9, 2021

• UMLS-EDA

  Public
  A light-weighted UMLS-based data augmentation for biomedical NLP tasks including Named Entity Recognition and sentence classification.

  natural-language-processingnamedbiomedical-named-entity-recognition+ 2umlsdata-augmentation

  Python

  •

  MIT License

  •1•10•0•0•Updated Apr 6, 2021Apr 6, 2021

• cohd-covid

  Public
  Python

  •1•0•0•0•Updated Mar 30, 2021Mar 30, 2021

• delirium

  Public
  Delirium classification model

  Jupyter Notebook

  •1•1•0•0•Updated Mar 25, 2021Mar 25, 2021

• COVID19-Structured_Trials

  Public
  An OMOP Common Data Model-Compliant Annotated Corpus for COVID-19 Clinical Trials

  0•0•0•0•Updated Feb 19, 2021Feb 19, 2021

• cohd_api_fork

  Public archive
  Columbia Open Health Data API

  Jupyter Notebook

  •

  Other

  •3•2•0•0•Updated Nov 17, 2020Nov 17, 2020