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    46 repositories

    • q2-boots

      Public
      q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾
      bootstrapbioinformaticsmicrobiomerarefactionqiime2
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•3•7•0•Updated Nov 7, 2024Nov 7, 2024

    • gut-to-soil-ridgeline-plots

      Public
      Svelte
      •0•0•1•0•Updated Nov 5, 2024Nov 5, 2024

    • q2-boots-book

      Public
      q2-boots documentation
      TeX
      •1•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • gut-to-soil-manuscript-figures

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•1•Updated Nov 4, 2024Nov 4, 2024

    • developing-with-qiime2

      Public
      Your guide for writing, testing, and distributing QIIME 2 plugins, interfaces, and documentation.
      TeX
      •5•1•29•0•Updated Oct 31, 2024Oct 31, 2024

    • gut-to-soil-dvc

      Public
      DVC registry for gut-to-soil paper
      0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • using-qiime2

      Public
      Source for *Using QIIME 2*
      TeX
      •1•0•8•0•Updated Oct 24, 2024Oct 24, 2024

    • cookiecutter-qiime2-plugin

      Public
      Template to help you create your new QIIME 2 plugin. 🚀
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•5•1•Updated Oct 24, 2024Oct 24, 2024

    • q2-sapienns

      Public
      hacktoberfestqiime2-plugin
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • q2-dwq2

      Public
      Educational plugin for use with *Developing with QIIME 2* (DWQ2).
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • q2-qsip2

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • genome-sampler

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•5•18•3•Updated Sep 24, 2024Sep 24, 2024

    • q2-cat-book

      Public
      TeX
      •3•0•2•0•Updated Sep 20, 2024Sep 20, 2024

    • caporaso-lab.github.io

      Public
      Lab website
      SCSS
      •
      BSD 3-Clause "New" or "Revised" License
      •21•1•0•1•Updated Sep 20, 2024Sep 20, 2024

    • .github

      Public
      0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

    • q2view-visualizations

      Public
      Hosting of visualizations for the QIIME 2 View gallery.
      0•0•0•0•Updated Jul 11, 2024Jul 11, 2024

    • sourcetracker2

      Public
      SourceTracker2
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •46•65•47•4•Updated Jul 10, 2024Jul 10, 2024

    • qiime2.org-home

      Public
      Prototype for updated qiime2.org homepage.
      0•0•0•0•Updated May 6, 2024May 6, 2024

    • q2-books

      Public
      A prototype collection of JupyterBooks documenting QIIME 2
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•2•0•Updated Apr 8, 2024Apr 8, 2024

    • humanure-paper1

      Public
      0•0•0•0•Updated Nov 20, 2023Nov 20, 2023

    • exmp-paper1

      Public
      Data supporting the NAU EXMP-1 and EXMP-2 (EXercise Microbiome Projects)
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Aug 24, 2022Aug 24, 2022

    • pretrained-feature-classifiers

      Public
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •4•3•6•0•Updated Jun 9, 2021Jun 9, 2021

    • covid-ci

      Public
      Continuous deployment of covid analyses using Concourse CI
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•0•Updated Apr 15, 2021Apr 15, 2021

    • gsheets-resource

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Mar 4, 2021Mar 4, 2021

    • simple-remote-directory-resource

      Public
      Concourse resource for handling remote directories
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Mar 4, 2021Mar 4, 2021

    • docker-galaxy-stable

      Public
      🐳📊📚 Docker Images tracking the stable Galaxy releases.
      Shell
      •
      MIT License
      •133•0•0•0•Updated Feb 17, 2021Feb 17, 2021

    • teaching-website-source

      Public
      Sphinx source for my teaching website
      Python
      •0•0•0•0•Updated Jan 13, 2021Jan 13, 2021

    • az-covid-1

      Public
      Scripts supporting an initial investigation of SARS-CoV-2 genomes from Arizona
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 7, 2020Jul 7, 2020

    • q2-phylogenomics

      Public
      Phylogenomics toolkit and pipelines
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•2•0•Updated Apr 15, 2020Apr 15, 2020

    • tax-credit-data

      Public
      raw data from tax-credit project
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •6•14•0•0•Updated Sep 19, 2019Sep 19, 2019