Repositories list

• ashleys-qc-pipeline

  Public
  Strand-Seq Quality Control Pipeline based on ashleys-qc

  quality-controlsnakemakegenomics+ 5preprocessingstrand-seqbioinformaticspipelinesequencing

  Jupyter Notebook

  •

  MIT License

  •1•4•0•2•Updated Oct 28, 2024Oct 28, 2024

• mosaicatcher-pipeline

  Public
  Integrated workflow for SV calling from single-cell Strand-seq data

  snakemakegenomicsstrand-seq+ 3mosaicatcherbioinformaticspipeline

  Jupyter Notebook

  •

  MIT License

  •9•21•2•1•Updated Sep 2, 2024Sep 2, 2024

• mosaicatcher-testdata

  Public
  0•0•0•0•Updated Aug 2, 2024Aug 2, 2024

• mosaicatcher-docs

  Public
  0•0•0•0•Updated Jul 30, 2024Jul 30, 2024

• mosaicatcher-referencedata

  Public
  0•0•0•0•Updated Jul 30, 2024Jul 30, 2024

• snakemake-profiles

  Public
  Snakemake profiles

  Shell

  •1•0•0•0•Updated Jul 30, 2024Jul 30, 2024

• genecore-mosaicatcher

  Public
  0•0•0•0•Updated Oct 24, 2022Oct 24, 2022

• ashleys-qc

  Public
  Automated Selection of High quality Libraries for the Extensive analYsis of Strandseq data (ASHLEYS)

  Python

  •

  MIT License

  •2•1•2•1•Updated Oct 20, 2022Oct 20, 2022

• mosaicatcher

  Public
  Processing of raw Strand-seq data as part of the SV calling pipeline

  C++

  •

  MIT License

  •5•4•4•0•Updated Jul 6, 2022Jul 6, 2022

• strandsequtils

  Public
  A random collection of scripts around strand-seq data

  R

  •

  Other

  •1•2•0•1•Updated Nov 30, 2021Nov 30, 2021

• TranslocatoR

  Public
  Find translocations in Mosaicatcher-analyzed Strand-seq data.

  R

  •2•4•0•0•Updated Sep 12, 2019Sep 12, 2019

• notation

  Public
  TeX

  •0•0•0•0•Updated Dec 5, 2018Dec 5, 2018

• simulations

  Public
  R

  •0•0•1•0•Updated Nov 29, 2018Nov 29, 2018

• MaRyam

  Public
  R

  •

  Other

  •1•0•5•0•Updated May 9, 2018May 9, 2018