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    13 repositories

    • gps-project-website-react

      Public
      Rebuild of the GPS Project Website in React.js
      JavaScript
      •
      MIT License
      •0•1•0•2•Updated Oct 17, 2024Oct 17, 2024

    • GBS-Typer-sanger-nf

      Public
      GBS Typer Pipeline in Nextflow
      nextflow-pipeline
      Python
      •
      GNU General Public License v3.0
      •1•0•1•0•Updated Oct 15, 2024Oct 15, 2024

    • gps-database-processor

      Public
      All-in-one tool to validate GPS (Global Pneumococcal Sequencing Project) database source files, generate inferred data, and export GPS Database Overview and Monocle compatible files
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 14, 2024Oct 14, 2024

    • seroba

      Public
      A Fork of the Original SeroBA
      Python
      •
      Other
      •16•2•0•0•Updated Oct 4, 2024Oct 4, 2024

    • gps-pipeline

      Public
      Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequencing Project)
      genomicsnextflowfastqinsilicostreptococcus-pneumoniaepipeline
      Nextflow
      •
      GNU General Public License v3.0
      •4•12•1•0•Updated Sep 13, 2024Sep 13, 2024

    • gps-database-overview

      Public
      Visualisation of publicly available GPS (Global Pneumococcal Sequencing Project) data that can be accessed via Monocle.
      JavaScript
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Sep 6, 2024Sep 6, 2024

    • cps_extractor

      Public
      NextFlow pipeline which extracts capsular locus sequences (CPS) and checks for disruptive mutations
      Python
      •1•1•1•0•Updated Aug 6, 2024Aug 6, 2024

    • deep_seq_analysis

      Public
      Python
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

    • GBS_QC_nf

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 10, 2024May 10, 2024

    • AtoZ_PneumoGenomics

      Public
      Materials for the "Pneumococcal Genomics A to Z" workshop at ISPPD 2024
      0•1•0•0•Updated Mar 13, 2024Mar 13, 2024

    • spn-pbp-amr

      Public
      PBP resistance assignment for Streptococcus pneumoniae
      Perl
      •
      MIT License
      •1•0•0•0•Updated Oct 2, 2023Oct 2, 2023

    • gps-visualiser

      Public
      Summarisation of the findings in GPS (Global Pneumococcal Sequencing Project) country-specific analysis papers in a visual format.
      JavaScript
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 4, 2023Mar 4, 2023

    • GPSC_pipeline_nf

      Public
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 24, 2022Nov 24, 2022