From b1ded5c7195aafe5082da7610bf5091ff5ffc354 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 23 Sep 2024 05:42:47 +0000 Subject: [PATCH] Bump the minor-and-patch group with 17 updates Bumps the minor-and-patch group with 17 updates: | Package | From | To | | --- | --- | --- | | [boto3](https://github.com/boto/boto3) | `1.35.12` | `1.35.24` | | [botocore](https://github.com/boto/botocore) | `1.35.12` | `1.35.24` | | [fastapi[all]](https://github.com/fastapi/fastapi) | `0.112.2` | `0.115.0` | | [google-auth](https://github.com/googleapis/google-auth-library-python) | `2.34.0` | `2.35.0` | | [google-cloud-bigquery](https://github.com/googleapis/python-bigquery) | `3.11.4` | `3.25.0` | | [google-cloud-pubsub](https://github.com/googleapis/python-pubsub) | `2.18.3` | `2.23.1` | | [google-cloud-secret-manager](https://github.com/googleapis/google-cloud-python) | `2.0.0` | `2.20.2` | | [pylint](https://github.com/pylint-dev/pylint) | `3.2.7` | `3.3.0` | | [pytest](https://github.com/pytest-dev/pytest) | `8.3.2` | `8.3.3` | | [python-dateutil](https://github.com/dateutil/dateutil) | `2.8.2` | `2.9.0.post0` | | [pytz](https://github.com/stub42/pytz) | `2024.1` | `2024.2` | | [slack-sdk](https://github.com/slackapi/python-slack-sdk) | `3.20.2` | `3.33.1` | | [urllib3](https://github.com/urllib3/urllib3) | `2.2.2` | `2.2.3` | | [strawberry-graphql[fastapi]](https://github.com/strawberry-graphql/strawberry) | `0.235.1` | `0.242.0` | | [airtable-python-wrapper](https://github.com/gtalarico/airtable-python-wrapper) | `0.15.1` | `0.15.3` | | [sample-metadata](https://github.com/populationgenomics/sample-metadata) | `5.2.1` | `5.7.2` | | [uvicorn](https://github.com/encode/uvicorn) | `0.29.0` | `0.30.6` | Updates `boto3` from 1.35.12 to 1.35.24 - [Release notes](https://github.com/boto/boto3/releases) - [Commits](https://github.com/boto/boto3/compare/1.35.12...1.35.24) Updates `botocore` from 1.35.12 to 1.35.24 - [Changelog](https://github.com/boto/botocore/blob/develop/CHANGELOG.rst) - [Commits](https://github.com/boto/botocore/compare/1.35.12...1.35.24) Updates `fastapi[all]` from 0.112.2 to 0.115.0 - [Release notes](https://github.com/fastapi/fastapi/releases) - [Commits](https://github.com/fastapi/fastapi/compare/0.112.2...0.115.0) Updates `google-auth` from 2.34.0 to 2.35.0 - [Release notes](https://github.com/googleapis/google-auth-library-python/releases) - [Changelog](https://github.com/googleapis/google-auth-library-python/blob/main/CHANGELOG.md) - [Commits](https://github.com/googleapis/google-auth-library-python/compare/v2.34.0...v2.35.0) Updates `google-cloud-bigquery` from 3.11.4 to 3.25.0 - [Release notes](https://github.com/googleapis/python-bigquery/releases) - [Changelog](https://github.com/googleapis/python-bigquery/blob/main/CHANGELOG.md) - [Commits](https://github.com/googleapis/python-bigquery/compare/v3.11.4...v3.25.0) Updates `google-cloud-pubsub` from 2.18.3 to 2.23.1 - [Release notes](https://github.com/googleapis/python-pubsub/releases) - [Changelog](https://github.com/googleapis/python-pubsub/blob/main/CHANGELOG.md) - [Commits](https://github.com/googleapis/python-pubsub/compare/v2.18.3...v2.23.1) Updates `google-cloud-secret-manager` from 2.0.0 to 2.20.2 - [Release notes](https://github.com/googleapis/google-cloud-python/releases) - [Changelog](https://github.com/googleapis/google-cloud-python/blob/main/packages/google-cloud-documentai/CHANGELOG.md) - [Commits](https://github.com/googleapis/google-cloud-python/compare/translate-2.0.0...google-cloud-secret-manager-v2.20.2) Updates `pylint` from 3.2.7 to 3.3.0 - [Release notes](https://github.com/pylint-dev/pylint/releases) - [Commits](https://github.com/pylint-dev/pylint/compare/v3.2.7...v3.3.0) Updates `pytest` from 8.3.2 to 8.3.3 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/8.3.2...8.3.3) Updates `python-dateutil` from 2.8.2 to 2.9.0.post0 - [Release notes](https://github.com/dateutil/dateutil/releases) - [Changelog](https://github.com/dateutil/dateutil/blob/master/NEWS) - [Commits](https://github.com/dateutil/dateutil/compare/2.8.2...2.9.0.post0) Updates `pytz` from 2024.1 to 2024.2 - [Release notes](https://github.com/stub42/pytz/releases) - [Commits](https://github.com/stub42/pytz/compare/release_2024.1...release_2024.2) Updates `slack-sdk` from 3.20.2 to 3.33.1 - [Release notes](https://github.com/slackapi/python-slack-sdk/releases) - [Commits](https://github.com/slackapi/python-slack-sdk/compare/v3.20.2...v3.33.1) Updates `urllib3` from 2.2.2 to 2.2.3 - [Release notes](https://github.com/urllib3/urllib3/releases) - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst) - [Commits](https://github.com/urllib3/urllib3/compare/2.2.2...2.2.3) Updates `strawberry-graphql[fastapi]` from 0.235.1 to 0.242.0 - [Release notes](https://github.com/strawberry-graphql/strawberry/releases) - [Changelog](https://github.com/strawberry-graphql/strawberry/blob/main/CHANGELOG.md) - [Commits](https://github.com/strawberry-graphql/strawberry/compare/0.235.1...0.242.0) Updates `airtable-python-wrapper` from 0.15.1 to 0.15.3 - [Changelog](https://github.com/gtalarico/pyairtable/blob/0.15.3/HISTORY.md) - [Commits](https://github.com/gtalarico/airtable-python-wrapper/compare/0.15.1...0.15.3) Updates `sample-metadata` from 5.2.1 to 5.7.2 - [Commits](https://github.com/populationgenomics/sample-metadata/commits) Updates `uvicorn` from 0.29.0 to 0.30.6 - [Release notes](https://github.com/encode/uvicorn/releases) - [Changelog](https://github.com/encode/uvicorn/blob/master/CHANGELOG.md) - [Commits](https://github.com/encode/uvicorn/compare/0.29.0...0.30.6) --- updated-dependencies: - dependency-name: boto3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: minor-and-patch - dependency-name: botocore dependency-type: direct:production update-type: version-update:semver-patch dependency-group: minor-and-patch - dependency-name: fastapi[all] dependency-type: direct:production update-type: version-update:semver-minor dependency-group: minor-and-patch - dependency-name: google-auth dependency-type: direct:production update-type: version-update:semver-minor dependency-group: minor-and-patch - dependency-name: google-cloud-bigquery dependency-type: direct:production update-type: version-update:semver-minor dependency-group: minor-and-patch - dependency-name: google-cloud-pubsub dependency-type: direct:production update-type: version-update:semver-minor dependency-group: minor-and-patch - dependency-name: google-cloud-secret-manager dependency-type: direct:production update-type: version-update:semver-minor dependency-group: minor-and-patch - dependency-name: pylint dependency-type: direct:development update-type: version-update:semver-minor dependency-group: minor-and-patch - dependency-name: pytest dependency-type: direct:development update-type: version-update:semver-patch dependency-group: minor-and-patch - dependency-name: python-dateutil dependency-type: direct:production update-type: version-update:semver-minor dependency-group: minor-and-patch - dependency-name: pytz dependency-type: direct:development update-type: version-update:semver-minor dependency-group: minor-and-patch - dependency-name: slack-sdk dependency-type: direct:production update-type: version-update:semver-minor dependency-group: minor-and-patch - dependency-name: urllib3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: minor-and-patch - dependency-name: strawberry-graphql[fastapi] dependency-type: direct:production update-type: version-update:semver-minor dependency-group: minor-and-patch - dependency-name: airtable-python-wrapper dependency-type: direct:production update-type: version-update:semver-patch dependency-group: minor-and-patch - dependency-name: sample-metadata dependency-type: direct:production update-type: version-update:semver-minor dependency-group: minor-and-patch - dependency-name: uvicorn dependency-type: direct:production update-type: version-update:semver-minor dependency-group: minor-and-patch ... Signed-off-by: dependabot[bot] --- requirements-dev.txt | 35 +++++++++++++-------------- requirements.in | 14 +++++------ requirements.txt | 27 ++++++++++----------- update_sample_status/requirements.txt | 6 ++--- 4 files changed, 40 insertions(+), 42 deletions(-) diff --git a/requirements-dev.txt b/requirements-dev.txt index f5caef9b9..545c478f0 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -19,7 +19,7 @@ anyio==4.4.0 # httpx # starlette # watchfiles -astroid==3.2.4 +astroid==3.3.3 # via pylint async-lru==2.0.4 # via -r requirements.in @@ -43,12 +43,12 @@ black==24.8.0 # via -r requirements-dev.in blinker==1.8.2 # via flask -boto3==1.35.12 +boto3==1.35.24 # via # -r requirements.in # cloudpathlib # cpg-utils -botocore==1.35.12 +botocore==1.35.24 # via # -r requirements.in # boto3 @@ -110,7 +110,7 @@ docker==7.1.0 # via testcontainers email-validator==2.2.0 # via fastapi -fastapi[all]==0.112.2 +fastapi[all]==0.115.0 # via # -r requirements.in # strawberry-graphql @@ -143,20 +143,22 @@ google-api-core[grpc]==2.19.2 # google-cloud-pubsub # google-cloud-secret-manager # google-cloud-storage -google-auth==2.34.0 +google-auth==2.35.0 # via # -r requirements.in # cpg-utils # google-api-core # google-cloud-appengine-logging + # google-cloud-bigquery # google-cloud-core + # google-cloud-pubsub # google-cloud-secret-manager # google-cloud-storage google-cloud-appengine-logging==1.4.5 # via google-cloud-logging google-cloud-audit-log==0.3.0 # via google-cloud-logging -google-cloud-bigquery==3.11.4 +google-cloud-bigquery==3.25.0 # via # -r requirements-dev.in # -r requirements.in @@ -167,7 +169,7 @@ google-cloud-core==2.4.1 # google-cloud-storage google-cloud-logging==2.7.0 # via -r requirements.in -google-cloud-pubsub==2.18.3 +google-cloud-pubsub==2.23.1 # via # -r requirements-dev.in # -r requirements.in @@ -201,7 +203,6 @@ grpc-google-iam-v1==0.12.7 grpcio==1.66.1 # via # google-api-core - # google-cloud-bigquery # google-cloud-pubsub # googleapis-common-protos # grpc-google-iam-v1 @@ -299,7 +300,6 @@ proto-plus==1.24.0 # via # google-api-core # google-cloud-appengine-logging - # google-cloud-bigquery # google-cloud-logging # google-cloud-pubsub # google-cloud-secret-manager @@ -308,7 +308,6 @@ protobuf==4.25.4 # google-api-core # google-cloud-appengine-logging # google-cloud-audit-log - # google-cloud-bigquery # google-cloud-pubsub # google-cloud-secret-manager # google-cloud-storage @@ -343,20 +342,20 @@ pygments==2.18.0 # via # rich # strawberry-graphql -pylint==3.2.7 +pylint==3.3.0 # via -r requirements-dev.in pymysql[rsa]==1.1.1 # via # -r requirements-dev.in # aiomysql # testcontainers -pytest==8.3.2 +pytest==8.3.3 # via # -r requirements-dev.in # pytest-cov pytest-cov==5.0.0 # via -r requirements-dev.in -python-dateutil==2.8.2 +python-dateutil==2.9.0.post0 # via # -r requirements.in # botocore @@ -370,7 +369,7 @@ python-multipart==0.0.9 # via # fastapi # strawberry-graphql -pytz==2024.1 +pytz==2024.2 # via -r requirements-dev.in pyyaml==6.0.2 # via @@ -403,7 +402,7 @@ six==1.16.0 # google-cloud-storage # isodate # python-dateutil -slack-sdk==3.20.2 +slack-sdk==3.33.1 # via -r requirements.in sniffio==1.3.1 # via @@ -417,7 +416,7 @@ starlette==0.38.4 # via # fastapi # strawberry-graphql -strawberry-graphql[debug-server,fastapi]==0.235.1 +strawberry-graphql[debug-server,fastapi]==0.242.0 # via # -r requirements-dev.in # -r requirements.in @@ -449,13 +448,13 @@ typing-extensions==4.12.2 # typer ujson==5.10.0 # via fastapi -urllib3==2.2.2 +urllib3==2.2.3 # via # botocore # docker # requests # testcontainers -uvicorn[standard]==0.29.0 +uvicorn[standard]==0.30.6 # via # -r requirements.in # fastapi diff --git a/requirements.in b/requirements.in index 741aac985..03299e3a6 100644 --- a/requirements.in +++ b/requirements.in @@ -9,14 +9,14 @@ async_lru cloudpathlib requests google-auth>=2.19.0 -google-cloud-bigquery==3.11.4 +google-cloud-bigquery==3.25.0 google-cloud-logging==2.7.0 -google-cloud-pubsub==2.18.3 +google-cloud-pubsub==2.23.1 google-cloud-storage==1.43.0 -uvicorn==0.29.0 -fastapi[all]==0.112.2 -strawberry-graphql[fastapi]==0.235.1 +uvicorn==0.30.6 +fastapi[all]==0.115.0 +strawberry-graphql[fastapi]==0.242.0 databases[mysql]==0.9.0 cryptography>=41.0.0 -python-dateutil==2.8.2 -slack-sdk==3.20.2 +python-dateutil==2.9.0.post0 +slack-sdk==3.33.1 diff --git a/requirements.txt b/requirements.txt index 4c8c2cdbd..edb0f6012 100644 --- a/requirements.txt +++ b/requirements.txt @@ -35,12 +35,12 @@ azure-storage-file-datalake==12.16.0 # via cloudpathlib backoff==2.2.1 # via -r requirements.in -boto3==1.35.12 +boto3==1.35.24 # via # -r requirements.in # cloudpathlib # cpg-utils -botocore==1.35.12 +botocore==1.35.24 # via # -r requirements.in # boto3 @@ -79,7 +79,7 @@ dnspython==2.6.1 # via email-validator email-validator==2.2.0 # via fastapi -fastapi[all]==0.112.2 +fastapi[all]==0.115.0 # via # -r requirements.in # strawberry-graphql @@ -100,20 +100,22 @@ google-api-core[grpc]==2.19.2 # google-cloud-pubsub # google-cloud-secret-manager # google-cloud-storage -google-auth==2.34.0 +google-auth==2.35.0 # via # -r requirements.in # cpg-utils # google-api-core # google-cloud-appengine-logging + # google-cloud-bigquery # google-cloud-core + # google-cloud-pubsub # google-cloud-secret-manager # google-cloud-storage google-cloud-appengine-logging==1.4.5 # via google-cloud-logging google-cloud-audit-log==0.3.0 # via google-cloud-logging -google-cloud-bigquery==3.11.4 +google-cloud-bigquery==3.25.0 # via -r requirements.in google-cloud-core==2.4.1 # via @@ -122,7 +124,7 @@ google-cloud-core==2.4.1 # google-cloud-storage google-cloud-logging==2.7.0 # via -r requirements.in -google-cloud-pubsub==2.18.3 +google-cloud-pubsub==2.23.1 # via -r requirements.in google-cloud-secret-manager==2.20.2 # via cpg-utils @@ -154,7 +156,6 @@ grpc-google-iam-v1==0.12.7 grpcio==1.66.1 # via # google-api-core - # google-cloud-bigquery # google-cloud-pubsub # googleapis-common-protos # grpc-google-iam-v1 @@ -210,7 +211,6 @@ proto-plus==1.24.0 # via # google-api-core # google-cloud-appengine-logging - # google-cloud-bigquery # google-cloud-logging # google-cloud-pubsub # google-cloud-secret-manager @@ -219,7 +219,6 @@ protobuf==4.25.4 # google-api-core # google-cloud-appengine-logging # google-cloud-audit-log - # google-cloud-bigquery # google-cloud-pubsub # google-cloud-secret-manager # google-cloud-storage @@ -250,7 +249,7 @@ pygments==2.18.0 # via rich pymysql==1.1.1 # via aiomysql -python-dateutil==2.8.2 +python-dateutil==2.9.0.post0 # via # -r requirements.in # botocore @@ -290,7 +289,7 @@ six==1.16.0 # google-cloud-storage # isodate # python-dateutil -slack-sdk==3.20.2 +slack-sdk==3.33.1 # via -r requirements.in sniffio==1.3.1 # via @@ -300,7 +299,7 @@ sqlalchemy==2.0.34 # via databases starlette==0.38.4 # via fastapi -strawberry-graphql[fastapi]==0.235.1 +strawberry-graphql[fastapi]==0.242.0 # via -r requirements.in tabulate==0.9.0 # via cpg-utils @@ -321,11 +320,11 @@ typing-extensions==4.12.2 # typer ujson==5.10.0 # via fastapi -urllib3==2.2.2 +urllib3==2.2.3 # via # botocore # requests -uvicorn[standard]==0.29.0 +uvicorn[standard]==0.30.6 # via # -r requirements.in # fastapi diff --git a/update_sample_status/requirements.txt b/update_sample_status/requirements.txt index 3e5d93202..790e63766 100644 --- a/update_sample_status/requirements.txt +++ b/update_sample_status/requirements.txt @@ -1,3 +1,3 @@ -airtable-python-wrapper==0.15.1 -google-cloud-secret-manager==2.0.0 -sample-metadata==5.2.1 +airtable-python-wrapper==0.15.3 +google-cloud-secret-manager==2.20.2 +sample-metadata==5.7.2